EWM24000.1, cds6659 (CDS) Nannochloropsis gaditana

Overview
NameEWM24000.1
Unique Namecds6659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:230305..231219 +

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Properties
Property NameValue
Protein idEWM24000.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g24.1998.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:230305..231219 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|553190346|ref|XP_005855172.1| (hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >gi|422293888|gb|EKU21188.1| hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >gi|585105287|gb|EWM24000.1| hypothetical protein Naga_100040g24 [Nannochloropsis gaditana])

HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query:    1 MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ 304
            MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ
Sbjct:    1 MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ 304          
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|298711275|emb|CBJ26520.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.383 bits (272), Expect = 4.822e-24
Identity = 67/170 (39.41%), Postives = 94/170 (55.29%), Query Frame = 0
Query:  124 DFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVI 293
            DF + +  +P++S FL D+  SY   G+ P L V SV AKL  + V  G +SKNT   FG M   EA  H+  G++GPEG L+ ELEG  P+R++A+VEL+ EE F  +          GN   +   QG           + HY T +S+  G + +LEW ++NINDVI
Sbjct:  169 DFFDFDVASPEMSMFLNDVLESYRAQGLVPRLSVASVEAKLCKVGVRLGGISKNTN--FGMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEFVVEDGK-------GNVVHKLESQG----------PKVHYITLQSN-IGKDAELEWQITNINDVI 318          
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|873241740|emb|CEL92248.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 86.6557 bits (213), Expect = 1.018e-15
Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 0
Query:   14 LFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELS--ASLAEDMSHGAQQAYRRIVSYFLAV--PGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELE--GNVPRRLVAEVELSVEESF 229
            +FPRW+ + V   ++     D   L WGF+ ++ V+  ++     L E+Q     +   +  D  T E    L+     AE++  G + AY  +   ++    P    +A     F      TP L  FL ++  +Y +  +KP L VE V  ++  +RVE+G   ++   + G M + EAL H + GV+GPEG L ++++    VPRR+V +VEL+  E F
Sbjct:   17 IFPRWREHMVSRADLAHMKMD--ALRWGFVEQDRVRQLLSQLNSKLLERQKAQRAEGREVSDDELTDEQNQALTDMGITAEELKEGMKTAYECVAQLYVDATSPDPAVRAAARQRF--GEILTPSLKHFLMEVLDTYAKHQLKPYLVVEEVHPRVLDVRVEKGS-GESELGILGRMDQREALYHFFSGVLGPEGALSRDIQHPSGVPRRIVVDVELAAREKF 233          
The following BLAST results are available for this feature:
BLAST of EWM24000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553190346|ref|XP_005855172.1|0.000e+0100.00hypothetical protein NGA_2110200 [Nannochloropsis ... [more]
gi|298711275|emb|CBJ26520.1|4.822e-2439.41expressed unknown protein [Ectocarpus siliculosus][more]
gi|873241740|emb|CEL92248.1|1.018e-1529.28unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6675rna6675Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications