EWM24000.1, cds6659 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|553190346|ref|XP_005855172.1| (hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >gi|422293888|gb|EKU21188.1| hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >gi|585105287|gb|EWM24000.1| hypothetical protein Naga_100040g24 [Nannochloropsis gaditana]) HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query: 1 MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ 304
MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ
Sbjct: 1 MSFAQRTTRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLSRALIQ 304
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|298711275|emb|CBJ26520.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 109.383 bits (272), Expect = 4.822e-24 Identity = 67/170 (39.41%), Postives = 94/170 (55.29%), Query Frame = 0
Query: 124 DFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVI 293
DF + + +P++S FL D+ SY G+ P L V SV AKL + V G +SKNT FG M EA H+ G++GPEG L+ ELEG P+R++A+VEL+ EE F + GN + QG + HY T +S+ G + +LEW ++NINDVI
Sbjct: 169 DFFDFDVASPEMSMFLNDVLESYRAQGLVPRLSVASVEAKLCKVGVRLGGISKNTN--FGMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEFVVEDGK-------GNVVHKLESQG----------PKVHYITLQSN-IGKDAELEWQITNINDVI 318
BLAST of EWM24000.1 vs. NCBI_GenBank
Match: gi|873241740|emb|CEL92248.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 86.6557 bits (213), Expect = 1.018e-15 Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 0
Query: 14 LFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELS--ASLAEDMSHGAQQAYRRIVSYFLAV--PGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELE--GNVPRRLVAEVELSVEESF 229
+FPRW+ + V ++ D L WGF+ ++ V+ ++ L E+Q + + D T E L+ AE++ G + AY + ++ P +A F TP L FL ++ +Y + +KP L VE V ++ +RVE+G ++ + G M + EAL H + GV+GPEG L ++++ VPRR+V +VEL+ E F
Sbjct: 17 IFPRWREHMVSRADLAHMKMD--ALRWGFVEQDRVRQLLSQLNSKLLERQKAQRAEGREVSDDELTDEQNQALTDMGITAEELKEGMKTAYECVAQLYVDATSPDPAVRAAARQRF--GEILTPSLKHFLMEVLDTYAKHQLKPYLVVEEVHPRVLDVRVEKGS-GESELGILGRMDQREALYHFFSGVLGPEGALSRDIQHPSGVPRRIVVDVELAAREKF 233 The following BLAST results are available for this feature:
BLAST of EWM24000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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