rna6670, rna6670 (mRNA) Nannochloropsis gaditana

Overview
Namerna6670
Unique Namerna6670
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1478
Alignment locationCM002469.1:219389..221110 -

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Properties
Property NameValue
Productmortality factor 4-like protein 1
Orig transcript idgnl|cribi|Naga_100040g19.2010.mrna
Orig protein idgnl|cribi|Naga_100040g19.2010
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:219389..221110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100040g19gene6448Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6670rna6670-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24012.1cds6654Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6670 ID=rna6670|Name=rna6670|organism=Nannochloropsis gaditana|type=mRNA|length=1478bp
CAACTACCTTTTGTTCAAAATCCCTTCAATGGACAGGACGCGAGTGATGG
AAAAAGTGATACCGGGTCTCCCTCTTTCATTCCACTGGCGTGTCAATTGT
GTTTGGAGGGGGAAAATCAGTCGGTATAATGAAGTACATGGTTTGCGGGT
GGGGAGTTGGTGGCTGTGGTGGCATGTTGGACGCTGGCGTGCGTATGCCA
TGGAGCGTATCCTCCCTGCTGTTGATGGATTCATTGCGAGGCCATTCGTT
CCATTATCTTGCGGTAACGCGCCCTGCCAACACGTGCACTTACATTTTCT
AACATGTACATCTTTGCTTGTTCTCTCCACAGCTTTTACTTCTCGTTCCT
CTTTGCAAGTCTAGCATGTTCAGGACTCTCACCCACTCAGCACTCCTTGT
GCTCGTGCTCATGGCACTGGCCTCCGTGAGGGCCTTCCTGCCTTCTCCAT
GCCGCATGCCGCCCACCATGAAAGTTGGTAAATCATCCTCGACGGGTCGT
GGGAAGAGCATCGGCATCATCAACTCGATGCGTGAAAATATCGAGGGGGA
ACCCAACCCTACTCAGATCATGGTCTCGAACTTGCCTTTTGACACCTCTA
CCGAGGAGCTGGAGGCCTTTGCCTCCCAGGCGGGGCAGGTCGTGAACGTG
AAGATCATTCTGGACCGAGAGACCGGGCGCAGCAAAGGCTACGGCTTCGT
CCTTTTCACCGAGCCGCTCTCCGCCACCTACGCGCTGGAACGCTTGGATG
GGATGGAGCTGGGAGGCCGGCCCTTGAAGATCCGCCCTGCAATCCGAAAG
ACTTACCCCAATACCCGGGGAGGCGGGGGGTACGGTGGGGACAACAACTA
CTAAGCGGGAGGAGTGAGGTGGGGAGGAGAGAGTGCCGCTTGCAGAAGGA
GGGCGGATGTGTGCAGAGGAGTCGGCTGATGGCGCCTGGAGCGTTTAAAG
GGCAGGCGAAAACTGTATTCAGTTTGGGGTGAAAGAGACGATTCTTGTTT
TGTTGTTTATGGGTGGCGGAGGAATGGGCTGTGAGAATGCCAGGGGTCCG
TCGGCAGCATGGAGGCATCGGGGGATGCGGCGAGGACTTACTTCTAGAAT
ATTCCGGACCTTAGGAAGAGGCTCGGTGAGGTGACTGGGAGAGGAGGGAA
AAGGGGGGGAGTCCGGCATTTAGACTCTGATTTAACGGTCGAACCTTTCC
ACGAGGCCCATGGGGGAGAAAAGAACAGATGTACATTATGGTCTCTCTGC
CCGTGATGGTCACGTCCAGCCGCATGTCGTCGGAAACAAAAAAGAAGGAG
AAGAGAGGCCGGGGGTGGTCGAGCCGGAGGAGGAAGGGACGGAGGGCAGT
AGACGAAGGGCCCCTAGGCGCTCGAGGGAGGCGGTGATAGGCGTGGAGGA
GGGCGGAGGGGTGGGATGGAGCGAATAAGCCGTGGCAGGGGAGAGAAGGA
AAAGAATACACGGATATTATCCCTGACA
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protein sequence of rna6670

>rna6670-protein ID=rna6670-protein|Name=rna6670|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MHRVGRRRVSTSATSVRCTEIKEKTGMIAVDNAAAPVEPAALDVTGSTKT
FKEQEVVLAKDSGQLYEAKIQKVQEGKKGSAPQYFIHYQGWKSKWDRWVG
AEDLLPKDEHSLKLQAQLRQAAKRRPGPAAEKEDGREGGFKRGKGEGGED
VSRPADPDLEPAPEKNSDPQVKLAMPFTLKKQLVDDWELVTRPPHHLVPL
PRSPSAAAVLSSFLEHKKEQGTASTVQLARLEEMLHGLREYFDKALPLIL
LYRHEREQYASLFPAASPSSASRPTSTEPALGSSSGAAPRPSDVYGAEHL
LRLFVRLPRLLALAPLAPAEMTQVQAKLGELLKFLQKQHGEIFLTSYIKK
EEEKEEGKGEGKGSQAVAESVMKKGRRTNAA
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mRNA from alignment at CM002469.1:219389..221110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6670 ID=rna6670|Name=rna6670|organism=Nannochloropsis gaditana|type=mRNA|length=1722bp|location=Sequence derived from alignment at CM002469.1:219389..221110- (Nannochloropsis gaditana)
AGACCATCAAACAGACAACCAACGTTGCACCACCCTCTATTTTCATTGAA
ACAGCGCACAAATTGGCCTCCGGGCGGTGCGTCCTAATGCACAGGGTGGG
TCGTCGCCGCGTTTCTACCTCAGCCACGAGTGTCAGATGCACAGAAATAA
AAGAGAAAACCGGGATGATCGCGGTTGATAACGCGGCGGCCCCTGTCGAA
CCCGCCGCGCTTGACGTGACGGGTTCGACAAAAACTTTCAAGGAGCAAGA
GGTGGTGCTAGCGAAGGACAGTGGACAACTCTACGAAGCCAAAATCCAGA
AAGTGCAGGAAGGGAAGAAAGGAAGTGCGCCCCAGTACTTCATCCACTAC
CAGGGGTGGAAGTCGAAGTGGGACAGGTGGGTGGGGGCCGAGGATCTGCT
CCCGAAGGACGAGCACTCCCTCAAGCTCCAAGCCCAGTTGAGGCAGGCGG
CCAAGAGGAGACCCGGGCCCGCGGCTGAGAAGGAGGACGGTAGAGAGGGT
GGCTTCAAGCGTGGGAAGGGGGAGGGAGGCGAGGACGTATCGAGGCCAGC
GGACCCAGACTTGGAGCCTGCGCCGGAGAAAAACAGCGACCCGCAAGTGA
AGCTTGCTATGCCTTTCACGTTGAAGAAGCAGCTAGTGGATGACTGGGAG
CTGGTGACGCGGTGTGTGGAGAATGGAGGGAGGAAGGGAGGATGGCGCGG
AGGGGGGGGCAGGATGTGGACCGATTTTCAGGCTCTCTCGAGGTGCTGGC
GGTCGATAACCTCAATCCTCTGCACCTCGCGTCCCCCTCTCTTCCCCCTT
TGACGCCCTCTTCCCCTTCCTCCCAGGCCCCCCCACCACCTCGTCCCCCT
CCCCCGCTCGCCGTCGGCCGCCGCCGTCCTATCCTCCTTCCTTGAGCACA
AGAAGGAGCAAGGCACAGCCTCCACGGTGCAGCTCGCTCGGCTCGAGGAG
ATGCTGCACGGGCTCCGGGAGTACTTCGACAAGGCCCTTCCGCTCATCCT
CCTCTACCGACACGAACGCGAGCAGTACGCGTCCCTCTTCCCGGCCGCCT
CCCCGTCCTCCGCCTCTCGGCCCACCTCCACCGAGCCCGCACTTGGCAGC
AGCAGTGGCGCTGCGCCCAGACCGTCGGATGTCTACGGTGCCGAGCACCT
CTTACGGCTCTTCGTGCGCCTCCCGCGCCTGCTCGCCCTCGCCCCCCTGG
CCCCCGCGGAGATGACTCAGGTGCAGGCCAAACTCGGGGAGCTGCTCAAA
TTCCTGCAGAAGCAGCACGGGGAGATATTCCTGACCTCGTACATTAAGAA
AGAAGAGGAAAAGGAGGAGGGGAAGGGGGAGGGAAAGGGGAGCCAAGCCG
TGGCGGAGTCGGTGATGAAGAAGGGAAGGAGGACGAATGCAGCATAGGCA
CGGATGGGGCGCGTTCGGCGACGCTGGGAGCACCTCCTTTCTCTTCTCTC
CTCCTCCTGGCCCCCTCCTCCAACTCTCAACGGGGCGGGTGGGAGATGGA
AGGGGGACGAACAGGGATCGAAACCACTTGAAAGTAAACTCGGGCGGTGC
CGTGTGAAGAAGCGGAAATCAAAGTCAAAGCCGTACAAGGCAAGATCCCA
GAGCGATCAAGGAGCTGCTCCTTTGCTTGTGTCAGGGATAATATCCGTGT
ATTCTTTTCCTTCTCTCCCCTGCCACGGCTTATTCGCTCCATCCCACCCC
TCCGCCCTCCTCCACGCCTATC
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Coding sequence (CDS) from alignment at CM002469.1:219389..221110-

>rna6670 ID=rna6670|Name=rna6670|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002469.1:219389..221110- (Nannochloropsis gaditana)
GCCCCCCCACCACCTCGTCCCCCTCCCCCGCTCGCCGTCGGCCGCCGCCG
TCCTATCCTCCTTCCTTGAGCACAAGAAGGAGCAAGGCACAGCCTCCACG
GTGCAGCTCGCTCGGCTCGAGGAGATGCTGCACGGGCTCCGGGAGTACTT
CGACAAGGCCCTTCCGCTCATCCTCCTCTACCGACACGAACGCGAGCAGT
ACGCGTCCCTCTTCCCGGCCGCCTCCCCGTCCTCCGCCTCTCGGCCCACC
TCCACCGAGCCCGCACTTGGCAGCAGCAGTGGCGCTGCGCCCAGACCGTC
GGATGTCTACGGTGCCGAGCACCTCTTACGGCTCTTCGTGCGCCTCCCGC
GCCTGCTCGCCCTCGCCCCCCTGGCCCCCGCGGAGATGACTCAGGTGCAG
GCCAAACTCGGGGAGCTGCTCAAATTCCTGCAGAAGCAGCACGGGGAGAT
ATTCCTGACCTCGTACATTAAGAAAGAAGAGGAAAAGGAGGAGGGGAAGG
GGGAGGGAAAGGGGAGCCAAGCCGTGGCGGAGTCGGTGATGAAGAAGGGA
AGGAGGACGAATGCAGCATAGATGCACAGGGTGGGTCGTCGCCGCGTTTC
TACCTCAGCCACGAGTGTCAGATGCACAGAAATAAAAGAGAAAACCGGGA
TGATCGCGGTTGATAACGCGGCGGCCCCTGTCGAACCCGCCGCGCTTGAC
GTGACGGGTTCGACAAAAACTTTCAAGGAGCAAGAGGTGGTGCTAGCGAA
GGACAGTGGACAACTCTACGAAGCCAAAATCCAGAAAGTGCAGGAAGGGA
AGAAAGGAAGTGCGCCCCAGTACTTCATCCACTACCAGGGGTGGAAGTCG
AAGTGGGACAGGTGGGTGGGGGCCGAGGATCTGCTCCCGAAGGACGAGCA
CTCCCTCAAGCTCCAAGCCCAGTTGAGGCAGGCGGCCAAGAGGAGACCCG
GGCCCGCGGCTGAGAAGGAGGACGGTAGAGAGGGTGGCTTCAAGCGTGGG
AAGGGGGAGGGAGGCGAGGACGTATCGAGGCCAGCGGACCCAGACTTGGA
GCCTGCGCCGGAGAAAAACAGCGACCCGCAAGTGAAGCTTGCTATGCCTT
TCACGTTGAAGAAGCAGCTAGTGGATGACTGGGAGCTGGTGACGCGGCCC
CCCCACCACCTCGTCCCCCTCCCCCGCTCGCCGTCGGCCGCCGCCGTCCT
ATCCTCCTTCCTTGAGCACAAGAAGGAGCAAGGCACAGCCTCCACGGTGC
AGCTCGCTCGGCTCGAGGAGATGCTGCACGGGCTCCGGGAGTACTTCGAC
AAGGCCCTTCCGCTCATCCTCCTCTACCGACACGAACGCGAGCAGTACGC
GTCCCTCTTCCCGGCCGCCTCCCCGTCCTCCGCCTCTCGGCCCACCTCCA
CCGAGCCCGCACTTGGCAGCAGCAGTGGCGCTGCGCCCAGACCGTCGGAT
GTCTACGGTGCCGAGCACCTCTTACGGCTCTTCGTGCGCCTCCCGCGCCT
GCTCGCCCTCGCCCCCCTGGCCCCCGCGGAGATGACTCAGGTGCAGGCCA
AACTCGGGGAGCTGCTCAAATTCCTGCAGAAGCAGCACGGGGAGATATTC
CTGACCTCGTACATTAAGAAAGAAGAGGAAAAGGAGGAGGGGAAGGGGGA
GGGAAAGGGGAGCCAAGCCGTGGCGGAGTCGGTGATGAAGAAGGGAAGGA
GGACGAATGCAGCATAGATGCACAGGGTGGGTCGTCGCCGCGTTTCTACC
TCAGCCACGAGTGTCAGATGCACAGAAATAAAAGAGAAAACCGGGATGAT
CGCGGTTGATAACGCGGCGGCCCCTGTCGAACCCGCCGCGCTTGACGTGA
CGGGTTCGACAAAAACTTTCAAGGAGCAAGAGGTGGTGCTAGCGAAGGAC
AGTGGACAACTCTACGAAGCCAAAATCCAGAAAGTGCAGGAAGGGAAGAA
AGGAAGTGCGCCCCAGTACTTCATCCACTACCAGGGGTGGAAGTCGAAGT
GGGACAGGTGGGTGGGGGCCGAGGATCTGCTCCCGAAGGACGAGCACTCC
CTCAAGCTCCAAGCCCAGTTGAGGCAGGCGGCCAAGAGGAGACCCGGGCC
CGCGGCTGAGAAGGAGGACGGTAGAGAGGGTGGCTTCAAGCGTGGGAAGG
GGGAGGGAGGCGAGGACGTATCGAGGCCAGCGGACCCAGACTTGGAGCCT
GCGCCGGAGAAAAACAGCGACCCGCAAGTGAAGCTTGCTATGCCTTTCAC
GTTGAAGAAGCAGCTAGTGGATGACTGGGAGCTGGTGACGCG
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Synonyms
Publications