rna6666, rna6666 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6666
Unique Name	rna6666
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1596
Alignment location	CM002469.1:209977..211625 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF4151
Orig transcript id	gnl\|cribi\|Naga_100040g14.2012.mrna
Orig protein id	gnl\|cribi\|Naga_100040g14.2012
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:209977..211625 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g14	gene6444	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6666	rna6666-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24014.1	cds6650	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:209977..211625-
coding sequence from alignment at CM002469.1:209977..211625-

mRNA sequence

>rna6666 ID=rna6666|Name=rna6666|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
CGACAAAGCGTGCATCGTTCAGCCGGCGCTCACCTTCTTGCGTTTTTCTT
CTTACATTGCCTCCGCGTTCCAGTTCAGGGCAAGAGGAACACGCTAAAAG
GGACGTGCTTCTCCACCACCGCAGCCTGCCACACCTTTCCCACCAAAAAA
GGACGCCATGCTCATCCTGGACGGGTTAGGCGTCACTCCTTTCATCCTTG
CCCTCCTCTACCTGGCCACGACGGCCCTCATATCCTCCCGCCTCCGAAAC
CTTCACACTCGGCACCCCGAAATGAACACCACTAAGCTCTTTGTGCTCTC
CGTTCTCTTGAGCTGTGGTATGCGTTGCCTTAGCTTCATTGCTTTGGGTG
CATTTTCGGTACAATCTATCGCCATTGATAACGACGCCAGCGGTCGCGCC
TCTTCACCCTCTTCCTCCTGGTCCTCCACGCAAGACCCTGACACCCAATT
CTACGAGAAGGCCCTCCTTATCCTCTTCAACCTCCCCGACTTCGTCTTCG
TCTCCGCCTACGTCCTCCTTGCTCTTGTCTGGGCCGAGGCCTTCATCCAG
TCTCGCTCTCACTGGCTGTCCATCAAGCAGTTCCGCCGAATGTGGCTGCT
CTCGTACCTGGTGTTCAACGCCTGCTTGTACCTCGGCCAGCTCGTTCTCT
ACACCCTCCTCTTTCTGCCCCACGGGAACCAAGACTTCCTCTCCAAAATC
ATTTTCCTCACCCTCTGCGTCATCAATTTCTCACTCCCCATCATATTGCT
ACTCCTCTTCTTCTACCTCTCCATCATGTTCGCCGGTTTCCCTTACAAGA
GCCGCCGCGCCCCGGCAAAGTTGAATAAGATCAGCAAGGTGATGGCTTGG
TGGACGATCGGGCGCATCATTTGGGGCATCGTGGTGCTCACCTCCATCCT
GCAGGGCTGGCTCTCGGACGCCCACAAGGACCGCCAGGTGTACTCCGTTG
TGCTGGTGGGACTTTTCCTGATCACCGAGCTCATTCCCTTCTTCGTGGCC
ATGGACGTGTCGCTCTTGGCATCCCTGTCCACGGCGTCGGCGGTGGGGGA
GGAAGGGAGGGAGGGAGGGGGGGAGGGAGGGGAGGGGGGGACCTACGGGG
CCTTGCTGGTGCCGGCGACCTTGTCGGAGGTGGAGGGAAGAGGGGAGGAG
GCGGCGGAGGAGGACACGAAGGAGGCCTGGAAGAGGGAGAACGGGATAGG
TGAAGGAGTGGGAGGGCCGAGGAGCGTGAAGGAGGGGGAGGAGGACGAGG
AAATGGGGAGAAGAGGGCCTGCGCAGGCCACAGGAAGGGGGGGAGGGGGG
AAGGGGGGGGACGGGGCCGTGCTGGAGAGTAAGGGAGGAGAGTGAAAACA
GACGGGCTGTTCGAAATGCGCAAGATGGGAGCCTGGTGCCCGTGACTGAA
TCTCAGGGGGGCACAAAGTAGGGGGCATGGGGATGGAGGGAGCCGTGCTG
GGCGCCAGTGTACAGAAAGAGGTATAGCGAGCGCTCGGGCGCGTCATGTA
ACAAAATATTTCAAAAGTAAATCCAGATGGAAATATCGTCACGAAATCCC
AGGCATCGGTTGGTGGTGGTCGAGGACGTCGGGCTTGGCCTCTGGA

protein sequence of rna6666

>rna6666-protein ID=rna6666-protein|Name=rna6666|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MGDSVRDLMRKAAKDKQRKADAIAAAVAKSKGKEELLALLRKKVGENAPT
AKKTLAAAAAASPSAEEQHSALFGSNLPDATTSSSASTQKTWKVALSALP
GAMAPPPPRSRQPPPPPPSPALPPPDPPATTKALPGIEHVDSDDEEEEEA
VQAITPSLPVPPAALPAGFFDEGVDVAENAAVRGGNVEENDGDGEAGSLP
SSPKPETSSASTSALPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQ
KFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLIATSGEAT
ERRMKKRGKDGEGEGEGEGMKKGEAVSNSGALPGVPSKAEAPTWRAVPED
EDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAP
DPLDWRAKSFA

mRNA from alignment at CM002469.1:209977..211625-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6666 ID=rna6666|Name=rna6666|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at CM002469.1:209977..211625- (Nannochloropsis gaditana)
AAGGTAGTTTTTCATCGTCTCTGAGTACAAGCAGGGAGGGCACATTCGTA
ATGCGGGCTGAAATACGCGTGATCATATCTAAGCAGCTCTCCCCGTTGGT
TCCACAGGAAAGTGTTCAAATTCAGACAAAATGGGGGACAGCGTCAGGGA
TCTAATGCGAAAGGCAGCCAAAGACAAGCAGCGCAAAGCTGATGCAATAG
CAGCGGCCGTGGCAAAGAGCAAAGGGAAAGAAGAAGTGAGTGGGAGGGCT
GGAAATCTCATTTGCTGCATCGAGGCGCAGTACTCAATGTGTTGTTAGTG
TTTACAACACTCATCGATGCTTCGTGTACATACTTCAACCCTTCTTGACC
CTTTATGGCAGCTTTTGGCACTATTGCGTAAGAAAGTCGGGGAAAACGCA
CCGACAGCCAAGAAGACTCTGGCCGCAGCTGCAGCCGCCTCGCCATCAGC
CGAAGAGCAGCATTCTGCTCTGTTTGGATCAAATCTACCCGATGCTACAA
CATCGTCATCAGCATCTACGCAAAAAACATGGAAAGTCGCCCTCTCGGCT
TTACCGGGCGCGATGGCCCCTCCGCCCCCTCGGAGCAGGCAACCTCCTCC
ACCCCCTCCCTCTCCAGCACTTCCACCTCCTGATCCTCCTGCCACGACCA
AGGCGCTGCCAGGCATTGAGCACGTGGACTCGGACGATGAAGAGGAGGAA
GAAGCAGTGCAGGCCATCACTCCTTCCCTCCCTGTCCCGCCCGCGGCTCT
ACCCGCCGGGTTCTTCGATGAGGGCGTGGACGTTGCGGAGAATGCCGCAG
TGAGAGGGGGCAACGTAGAGGAAAACGATGGCGATGGGGAGGCCGGCTCG
CTTCCTTCCTCCCCGAAACCCGAGACGTCCAGTGCCAGCACCAGTGCCCT
GCCCACTGGCTTCTTTGACGACCCCGAGGCGGACGCGCTCGCCCACAACA
TTGACCTCAACGCTCAAAAAGAGGCGGAGGCAAGAAAGGAATGGGAGGAC
TTTCAGAAGTTCGCTGCAGACGTGGCGGTGGCCGAGGCAGGCCAGGAGGC
GGTGGAGGAAGAGGAGTGGGAGGAGGAGGAGCGACGGAAGGAACTCGAAC
ATTTGTACTACACTGCCAGGCTCGCAGGGCTCATAGCCACGTCGGGGGAG
GCGACGGAGCGACGGATGAAGAAACGGGGGAAGGACGGAGAGGGGGAAGG
AGAAGGAGAGGGGATGAAGAAGGGTGAGGCAGTGAGTAATTCGGGGGCAT
TGCCGGGCGTGCCCTCCAAGGCGGAGGCCCCTACATGGCGCGCCGTCCCT
GAGGACGAGGATGGGGATGGAAAGGAGAGGGTTGGGGACGAGGGTCGCGA
AAAAGAAACGGTGGCCGCTCTAGAGATCTCGGCCATGCTTCGGGAGAAAA
AGCGGCGGAAGAAAGAGGCGATGCAGGAGGTCGTGCAGGACGGATACGTC
GCTCCCGACCCCCTGGACTGGAGGGCGAAATCATTTGCATAATGAGGGAG
GGCGGTAAAGGAATAAACGCTCGATGTTCTTGAGAATATGTGTTCTTTTT
AAATTCCTGATGGTGCTGGCTCTGCGGGATTGAAACGTGTCCACTCCGCA
GTGTGATAGGAGAGGTCGCAGAGAGTCGTGGCCGCGGGATGGCAACCCA

Coding sequence (CDS) from alignment at CM002469.1:209977..211625-

>rna6666 ID=rna6666|Name=rna6666|organism=Nannochloropsis gaditana|type=CDS|length=2472bp|location=Sequence derived from alignment at CM002469.1:209977..211625- (Nannochloropsis gaditana)
CTTTTGGCACTATTGCGTAAGAAAGTCGGGGAAAACGCACCGACAGCCAA
GAAGACTCTGGCCGCAGCTGCAGCCGCCTCGCCATCAGCCGAAGAGCAGC
ATTCTGCTCTGTTTGGATCAAATCTACCCGATGCTACAACATCGTCATCA
GCATCTACGCAAAAAACATGGAAAGTCGCCCTCTCGGCTTTACCGGGCGC
GATGGCCCCTCCGCCCCCTCGGAGCAGGCAACCTCCTCCACCCCCTCCCT
CTCCAGCACTTCCACCTCCTGATCCTCCTGCCACGACCAAGGCGCTGCCA
GGCATTGAGCACGTGGACTCGGACGATGAAGAGGAGGAAGAAGCAGTGCA
GGCCATCACTCCTTCCCTCCCTGTCCCGCCCGCGGCTCTACCCGCCGGGT
TCTTCGATGAGGGCGTGGACGTTGCGGAGAATGCCGCAGTGAGAGGGGGC
AACGTAGAGGAAAACGATGGCGATGGGGAGGCCGGCTCGCTTCCTTCCTC
CCCGAAACCCGAGACGTCCAGTGCCAGCACCAGTGCCCTGCCCACTGGCT
TCTTTGACGACCCCGAGGCGGACGCGCTCGCCCACAACATTGACCTCAAC
GCTCAAAAAGAGGCGGAGGCAAGAAAGGAATGGGAGGACTTTCAGAAGTT
CGCTGCAGACGTGGCGGTGGCCGAGGCAGGCCAGGAGGCGGTGGAGGAAG
AGGAGTGGGAGGAGGAGGAGCGACGGAAGGAACTCGAACATTTGTACTAC
ACTGCCAGGCTCGCAGGGCTCATAGCCACGTCGGGGGAGGCGACGGAGCG
ACGGATGAAGAAACGGGGGAAGGACGGAGAGGGGGAAGGAGAAGGAGAGG
GGATGAAGAAGGGTGAGGCAGTGAGTAATTCGGGGGCATTGCCGGGCGTG
CCCTCCAAGGCGGAGGCCCCTACATGGCGCGCCGTCCCTGAGGACGAGGA
TGGGGATGGAAAGGAGAGGGTTGGGGACGAGGGTCGCGAAAAAGAAACGG
TGGCCGCTCTAGAGATCTCGGCCATGCTTCGGGAGAAAAAGCGGCGGAAG
AAAGAGGCGATGCAGGAGGTCGTGCAGGACGGATACGTCGCTCCCGACCC
CCTGGACTGGAGGGCGAAATCATTTGCATAAATGGGGGACAGCGTCAGGG
ATCTAATGCGAAAGGCAGCCAAAGACAAGCAGCGCAAAGCTGATGCAATA
GCAGCGGCCGTGGCAAAGAGCAAAGGGAAAGAAGAACTTTTGGCACTATT
GCGTAAGAAAGTCGGGGAAAACGCACCGACAGCCAAGAAGACTCTGGCCG
CAGCTGCAGCCGCCTCGCCATCAGCCGAAGAGCAGCATTCTGCTCTGTTT
GGATCAAATCTACCCGATGCTACAACATCGTCATCAGCATCTACGCAAAA
AACATGGAAAGTCGCCCTCTCGGCTTTACCGGGCGCGATGGCCCCTCCGC
CCCCTCGGAGCAGGCAACCTCCTCCACCCCCTCCCTCTCCAGCACTTCCA
CCTCCTGATCCTCCTGCCACGACCAAGGCGCTGCCAGGCATTGAGCACGT
GGACTCGGACGATGAAGAGGAGGAAGAAGCAGTGCAGGCCATCACTCCTT
CCCTCCCTGTCCCGCCCGCGGCTCTACCCGCCGGGTTCTTCGATGAGGGC
GTGGACGTTGCGGAGAATGCCGCAGTGAGAGGGGGCAACGTAGAGGAAAA
CGATGGCGATGGGGAGGCCGGCTCGCTTCCTTCCTCCCCGAAACCCGAGA
CGTCCAGTGCCAGCACCAGTGCCCTGCCCACTGGCTTCTTTGACGACCCC
GAGGCGGACGCGCTCGCCCACAACATTGACCTCAACGCTCAAAAAGAGGC
GGAGGCAAGAAAGGAATGGGAGGACTTTCAGAAGTTCGCTGCAGACGTGG
CGGTGGCCGAGGCAGGCCAGGAGGCGGTGGAGGAAGAGGAGTGGGAGGAG
GAGGAGCGACGGAAGGAACTCGAACATTTGTACTACACTGCCAGGCTCGC
AGGGCTCATAGCCACGTCGGGGGAGGCGACGGAGCGACGGATGAAGAAAC
GGGGGAAGGACGGAGAGGGGGAAGGAGAAGGAGAGGGGATGAAGAAGGGT
GAGGCAGTGAGTAATTCGGGGGCATTGCCGGGCGTGCCCTCCAAGGCGGA
GGCCCCTACATGGCGCGCCGTCCCTGAGGACGAGGATGGGGATGGAAAGG
AGAGGGTTGGGGACGAGGGTCGCGAAAAAGAAACGGTGGCCGCTCTAGAG
ATCTCGGCCATGCTTCGGGAGAAAAAGCGGCGGAAGAAAGAGGCGATGCA
GGAGGTCGTGCAGGACGGATACGTCGCTCCCGACCCCCTGGACTGGAGGG
CGAAATCATTTGCATAAATGGGGGACAGCGTCAGGGATCTAATGCGAAAG
GCAGCCAAAGACAAGCAGCGCAAAGCTGATGCAATAGCAGCGGCCGTGGC
AAAGAGCAAAGGGAAAGAAGAA

Synonyms

Publications