EWM24014.1, cds6650 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24014.1 vs. NCBI_GenBank
Match: gi|585105301|gb|EWM24014.1| (protein of unknown function DUF4151 [Nannochloropsis gaditana]) HSP 1 Score: 807.364 bits (2084), Expect = 0.000e+0 Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query: 1 MGDSVRDLMRKAAKDKQRKADAIAAAVAKSKGKEELLALLRKKVGENAPTAKKTLAAAAAASPSAEEQHSALFGSNLPDATTSSSASTQKTWKVALSALPGAMAPPPPRSRQPPPPPPSPALPPPDPPATTKALPGIEHVDSDDEEEEEAVQAITPSLPVPPAALPAGFFDEGVDVAENAAVRGGNVEENDGDGEAGSLPSSPKPETSSASTSALPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLIATSGEATERRMKKRGKDGEGEGEGEGMKKGEAVSNSGALPGVPSKAEAPTWRAVPEDEDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAKSFA 411
MGDSVRDLMRKAAKDKQRKADAIAAAVAKSKGKEELLALLRKKVGENAPTAKKTLAAAAAASPSAEEQHSALFGSNLPDATTSSSASTQKTWKVALSALPGAMAPPPPRSRQPPPPPPSPALPPPDPPATTKALPGIEHVDSDDEEEEEAVQAITPSLPVPPAALPAGFFDEGVDVAENAAVRGGNVEENDGDGEAGSLPSSPKPETSSASTSALPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLIATSGEATERRMKKRGKDGEGEGEGEGMKKGEAVSNSGALPGVPSKAEAPTWRAVPEDEDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAKSFA
Sbjct: 1 MGDSVRDLMRKAAKDKQRKADAIAAAVAKSKGKEELLALLRKKVGENAPTAKKTLAAAAAASPSAEEQHSALFGSNLPDATTSSSASTQKTWKVALSALPGAMAPPPPRSRQPPPPPPSPALPPPDPPATTKALPGIEHVDSDDEEEEEAVQAITPSLPVPPAALPAGFFDEGVDVAENAAVRGGNVEENDGDGEAGSLPSSPKPETSSASTSALPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLIATSGEATERRMKKRGKDGEGEGEGEGMKKGEAVSNSGALPGVPSKAEAPTWRAVPEDEDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAKSFA 411
BLAST of EWM24014.1 vs. NCBI_GenBank
Match: gi|298708070|emb|CBJ30423.1| (hypothetical protein Esi_0189_0054 [Ectocarpus siliculosus]) HSP 1 Score: 70.4774 bits (171), Expect = 1.748e-9 Identity = 80/225 (35.56%), Postives = 106/225 (47.11%), Query Frame = 0
Query: 215 LPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLIATSGEATERRMKKRGKDGEGEGEGE---GMKKGEAVSNSGALPGVPSK--------AEAPTWRAVPEDEDGDGKERVGDEGREKETVAA--------------------LEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAK 408
LP GFFDDPE DA + +DL A+K+ E + EW++F FA +V E +E EE E++E+ +ELE RLA L+ E+ R +KR + GE E E ++K S +GA+ K E P+ DG G G E E E A EISAMLR +KR+KK A +E YV DPLDWRA+
Sbjct: 251 LPEGFFDDPEMDAKSRGVDLKAEKKEEEQNEWKEFMSFAEEVKKTEKEEEQQEEAVEEDKEQYEELEQATMMGRLA-LLMNKSESIITRKRKRAEPARGEAEDEQKDDLEKNSTDSRNGAVAAAEGKEKRQREEEEEEEEEETRPKSRDGSGGGGGGGEKEEVEKSVAKTGTAMREVAVASAPADAAAAEISAMLRGRKRKKKRATEEAFSGEYVPMDPLDWRAR 474
BLAST of EWM24014.1 vs. NCBI_GenBank
Match: gi|566019341|gb|ETI42252.1| (hypothetical protein F443_12604 [Phytophthora parasitica P1569] >gi|567985300|gb|ETL35644.1| hypothetical protein L916_12251 [Phytophthora parasitica]) HSP 1 Score: 60.077 bits (144), Expect = 7.339e-7 Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 0
Query: 200 PSSPKPETSSASTS--ALPTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAVEEEEWEEEERRKELEHLYYTARLAGLI 293
P++ +P S+++ A+P GFFDD ADA A ++D+ E + EWE FQ+FAA+V +E + EE +E E ++LE++ Y R ++
Sbjct: 35 PTATQPGISASNQVKPAIPAGFFDDSLADAKARSVDVKQLAEKQLESEWEAFQEFAAEVEQQSVQEEKQQVEEIKEREAVEQLENMEYVDRYRVIL 130 The following BLAST results are available for this feature:
BLAST of EWM24014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|