rna6662, rna6662 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6662
Unique Name	rna6662
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1785
Alignment location	CM002469.1:201628..202115 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100040g10.2025.mrna
Orig protein id	gnl\|cribi\|Naga_100040g10.2025
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:201628..202115 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g10	gene6440	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6662	rna6662-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24027.1	cds6646	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:201628..202115+
coding sequence from alignment at CM002469.1:201628..202115+

mRNA sequence

>rna6662 ID=rna6662|Name=rna6662|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp
ATGATGTCATCAATTCGCCCTCTTGTGTATAGTTCCGTCGCTCCTACCCG
GCAACGCTTCACTTTCCTCAAGCGACTCCGCATTCGGCCGACCATACGAC
GCATCCGCGGCATTAATTTTTCCCGAAACGTTGCACGTATTCCGGCGTCT
TCACCTTTTGAAGAAGACGACGAGGCCATTGGCCACCCCCCCGAGACCCT
CCTCCACAACCAGCAGCCCCATCGGCGCCGGCGCTTTGGCGGCGCAGTGT
CTTATCGACAGCAGATTTCGGAGGAGAGCACGGTCACCGTCACGGAGGGC
CGGGTATTTGACTTGCCTCTCCTCCGCCTTCCCCCGCTTCCCTCCCCGCT
TCCCCCTCTGTCCCAGCCTGGCCCCCCTCCTTCCCGTCAAGTCATCGAGA
CCTACACGGATTTCCACCAAGCGTTTGAATCCTTTTCGGAAAAGGAGAAG
AAAGCACGCCGGCGAGCTCTCTCCCGCTTGAGTGTGGTGGGGAAAACAGC
TGAGCGGGTTCGGGAACACCCCGTCTTGGAAGTCCTCCACGCCCGAGTCC
GCTCTCAGTCTCAGCCAGGCCAGCGGACAGATCCATACAAAATCGGATTG
GCGATCGAAGGGGGGGGGATGCGGGGGGCTGTCTCGGCGGGGGCGGCCGC
CGCTATCAATCTGCTGGGTCTGTCGGACGGCTTTGACGCCGTCTACGGCT
CCAGCGCTGGGGCTCTGATCGCCGCTTTTTTCGTCTCGGGGCAATTAAAC
GGGACCATCATTTATTCGGACGTCCTCCCTGCCGCAGGCAAGAGATTCCT
CGACCGGGCGCAACTTATTCCGGCCATGGGTTTGCTGCCAGGGGTAGAGG
CGAAACCGGTCCTGAACTTGCAATTCCTGGAGGACGTGATCCGTAACACG
GTGCGCTTGGATTGGGCTTCCTTTTGGGCAAAAAACGCGGTGCAACCGCT
CAATGTGGTGGCCAGCAGCCTAGACGGGATGGAAAGCTTGGCTTTGAGGA
GTGACAAGGGCGACTTCGATTCCTTCGAGAGTCTTATCCAGTGCCTGAAG
AGCAGCATGTGCGTTCCCGGGGTGGCGGGACCGCCTGTGTTTCTGAACGT
GACGTGCCGGCAGACGGGGGAGAGAAAAGAACGGGCCTTCGCGGATGCCT
TGGTCTTTGAACCCATTCCCCTAAAAAGTGCAGTGGAGGACGGGTGCACG
CACATCGTCACTTTGCGCACGCGCCCTGACGGCAGTGAGGTCTTGGGGCA
CAAAGTGACGGGGATTTACGAGCGATTCATTGCCCGCAGATTCTTGGCGG
ATCTCCACAAATTTCGCCCGGCTGCCATGCACATGACCAAGTTCGATCAT
TTGAGGCAGTACGCCGCGGACTTGCTCCTTTTGAACGAAGGTTCCCACGC
CAAAGCGACAGGCGTGCATGTGCCGGACGGGAAAGGCGGGGGCCGGGCCG
TCCACTTGTTGCCCGTGGCCCCGCCCATGGGCACCACCGAGGTGGACACC
CTCGATTCTTCACGAGAAGCCTTGCGGAAGGGGTTGAAGGACGGATTTGC
GGCCGCGTGGAACCTGATGGCGTCGCCCGAGCTGGCAGAAGTGTACCCTG
GGGAGGTGGTCGCGAGTGAGCTGTTTGATTGTGAGGACGTGGAGACTTTT
GACCTGACCTTTAAAAGATTCAGTACGGTCTTCCAAGGAGGCATTGGGCA
GGCGGAGGAAAATGGATTGAGGGCAACAAAACAGGAGCAACTGCTCTTTC
CTCGGCAGGGACCACATCAACCGCGACTAGCATAG

protein sequence of rna6662

>rna6662-protein ID=rna6662-protein|Name=rna6662|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MILMPPPSENEGEPLTRYNAMMSRRCSAPFQSDHGAWQKAINKNNARAWT
TCGHDTARGTWAVCMLACGFKYSTAGVTWKEISISSVRNSLKKEWGQRFR
TR

mRNA from alignment at CM002469.1:201628..202115+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6662 ID=rna6662|Name=rna6662|organism=Nannochloropsis gaditana|type=mRNA|length=488bp|location=Sequence derived from alignment at CM002469.1:201628..202115+ (Nannochloropsis gaditana)
ATGATTTTGATGCCGCCACCTTCAGAAAACGAGGTGACAGACCGGGGGAA
TAGGGGGCACACGCATACTCTAGAAATTTTGTTTTTTTATAAATGGGACA
AAAAATAAAGCCCTTCCACCATGGAGAAGATATATGTAACTGACTGGACG
GGGGGACACAAGGAGAAACTAGGATCATTAATAGCGCACTGGCAGATAGA
CTGAATTGATAGGGGGAGCCACTGACGCGATATAACGCCATGATGTCTCG
AAGATGCAGCGCTCCGTTTCAATCTGACCACGGGGCATGGCAAAAAGCAA
TAAATAAAAATAATGCGCGAGCATGGACTACGTGCGGGCATGACACAGCG
CGTGGCACTTGGGCGGTGTGCATGCTGGCCTGTGGCTTCAAGTACTCTAC
TGCCGGTGTGACCTGGAAAGAGATAAGTATCTCGAGTGTACGAAATTCTT
TGAAAAAAGAGTGGGGCCAACGTTTTAGAACTAGATGA

Coding sequence (CDS) from alignment at CM002469.1:201628..202115+

>rna6662 ID=rna6662|Name=rna6662|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002469.1:201628..202115+ (Nannochloropsis gaditana)
ATGATTTTGATGCCGCCACCTTCAGAAAACGAGGGGGAGCCACTGACGCG
ATATAACGCCATGATGTCTCGAAGATGCAGCGCTCCGTTTCAATCTGACC
ACGGGGCATGGCAAAAAGCAATAAATAAAAATAATGCGCGAGCATGGACT
ACGTGCGGGCATGACACAGCGCGTGGCACTTGGGCGGTGTGCATGCTGGC
CTGTGGCTTCAAGTACTCTACTGCCGGTGTGACCTGGAAAGAGATAAGTA
TCTCGAGTGTACGAAATTCTTTGAAAAAAGAGTGGGGCCAACGTTTTAGA
ACTAGATGAATGATTTTGATGCCGCCACCTTCAGAAAACGAGGGGGAGCC
ACTGACGCGATATAACGCCATGATGTCTCGAAGATGCAGCGCTCCGTTTC
AATCTGACCACGGGGCATGGCAAAAAGCAATAAATAAAAATAATGCGCGA
GCATGGACTACGTGCGGGCATGACACAGCGCGTGGCACTTGGGCGGTGTG
CATGCTGGCCTGTGGCTTCAAGTACTCTACTGCCGGTGTGACCTGGAAAG
AGATAAGTATCTCGAGTGTACGAAATTCTTTGAAAAAAGAGTGGGGCCAA
CGTTTTAGAACTAGATGA

Synonyms

Publications