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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100040g6.1992.mrna |
| Orig protein id | gnl|cribi|Naga_100040g6.1992 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:195211..197074 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6658 ID=rna6658|Name=rna6658|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
CGATTATAAGCAAGCAATACATTAAAAAATATACGCCACTATGGCGGACC
TGGGTCTGGGCAAGGAAACCACGAAAGACCTGACCCGTATCGAGCGGATC
GGCGCTCACAGCCACATTCGCGGCCTGGGCCTGGACGATGCGCTAGAGCC
TCGGGAAGTTAGTCAAGGGATGGTCGGTCAAACAGGGGCACGCCGGGCTG
CGGGGATAGTTTACAAAATGATCAAGGAAGGGAAGATTGCAGGGCGTGCC
ATCCTCCTAGCCGGTCAACCTGGCACGGGGAAGACAGCCGTGGCCATGGG
CTTGGCACAAGCACTGGGGGAAGGCACCCCCTTCACGACGATTGCGGGCT
CGGAGATCTTTTCCCTGGAGATGTCCAAGACGGAGGCCATGACGCAGGCC
TTCCGTCGCAGCATCGGGGTGCGGATCATGGAGGAGACGGAGATCATCGA
GGGGGAGGTGGTGGAGGTCCAGGTGGACACGCCGGCGGGGGGTGGGGCCA
AAACGGGTAGGATCACCCTCTGCACCACGGAGATGGAGACTGTGTACGAC
CTGGGGGCCAAGATGATCGAGGCGCTCCAGAAGGAGAAGGTCTCGGCGGG
GGACGTGATCACCATTGACAAGGCGAGCGGGAAGATTAGCAAGCTGGGCC
GGTCCTTCACGCGCTCCCGGGACTACGATGCCATGGGCCCCCAAACGCGC
TTCGTGCAGTGCCCGGAGGGGGAGCTCCAGAAACGGAAGGAGACGGTCCA
CGTGGTCAGTCTCCACGAGATCGACGTCATCAATTCCCGGCAACAGGGGT
TCCTGGCCCTCTTCGCGGGGGACACGGGGGAGATCAAGGGGGAGGTGCGG
GAGCAGATCGACATGAAGGTGGCAGAGTGGCGGGAGGAGGGGAAAGCGAC
CGTGGTGCCAGGCGTCCTTTTCATCGACGAGGTCCACATGCTGGACATCG
AGTGCTTCTCCTGGCTCAACCGGGCCCTTGAAAGCGACTTGGCGCCCGTC
TTGATCATGGCCACGAACCGAGGGATGGCTCAGATTCGAGGCACAGCCTA
CAAGAGCCCGCACGGTATTCCCATCGACCTCTTGGACCGGCTCATGATTA
TTAGCACCACCCCTTACGCCGAGGCGGAGGTGCGGAGAATCTTGCAGATT
CGATGCGAAGAGGAGGACGTCGAGATGAGCGATGATGCACTGGAACTTTT
GACCAAAATAGGAATGGAAGCTTCGTTACGGTACGCCATTCACATGATCA
TGGCCGCCTCGCTCGTTGCCCACAAGCGAAAAGCCGGTGAGGTGGATGTA
CAAGACATCAAGAGGGTGTATTCATTATTCGTAGATGTCAAGCGGTCGAC
GCAGTTTCTGGTGGAGTACCAGCAGGAGTTCATGTTCAATGAACTGGGGG
GGGATGACATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAG
AAAGCAGCGGTAGGGGAGGGGAGGGAGGGAGCGGCGGACATGGCAGAGGA
TTAAGGACCAAGTTAAGGGAGTAAAAGCCCGTTAGCTATAGTCACTACAC
AAATAAAGCGGTAATAAAGTTCAGTTTTGCCCCATTTCAATGG back to topprotein sequence of rna6658 >rna6658-protein ID=rna6658-protein|Name=rna6658|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MPSRISYLGVAFSLAAASYHFASSFQLRMTVGGGVHQKRRKTLNNQHKVP
PSAVDTIKTTKTTEEDTTNKSKHPFLETSPFHCTLYDGLNRPWTKEGARP
TTLEGRSWHADMPLPLAKKMIVEAAQDQSVSKEMLMAALHMVEYDAAFEA
GAKGGWEVGDLEGEWRLAFNADAPFLESRRDRWGYLIQAQEKEGEAEEEV
AVVGLRLDTRASTIVLDSLQEPRPKSFQGTFWKDRGGKVHVDVTRVQLLK
AMDPANEEEEAVGEAGGGRLLPESELPLMDAFLRPGSFFEVIQVDKLHLA
LRYHLGGALESSLLIFNKVVPFSAEAGGLPEGGESVQWREVGSTEAGAGI
EDKSAPEAEAEGTHGKDRWGHVKKTNREGQPRYANAEERLQQLRQRRRML
GGYDSFWEYLEEEKVSLFLVLAFPAFVKASPHLLAAAHVKWMLLQEMAGS
ALQAWGGQS back to topmRNA from alignment at CM002469.1:195211..197074+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6658 ID=rna6658|Name=rna6658|organism=Nannochloropsis gaditana|type=mRNA|length=1864bp|location=Sequence derived from alignment at CM002469.1:195211..197074+ (Nannochloropsis gaditana)
ATGCCGAGTCGCATCTCCTACTTAGGCGTTGCATTTTCGTTGGCTGCCGC
CTCCTATCATtttgcttcttcttttcagCTTCGCATGACAGTCGGGGGTG
GTGTTCATCAGAAGCGTCGCAAAACTCTCAACAACCAGCACAAGGTACCT
CCTTCTGCGGTAGACACAATCAAGACCACGAAAACGACAGAGGAAGACAC
TACAAATAAGAGCAAGTACGTATTTTTGTGAAATACGATGCGGTCTTACT
TTTATTCCCGCCGTtgccctttgccctcctcccacccgcattgacccctt
ctctctttttctaCTCAAACGCCGCCACCGCTATTCTCCGACGTAAAATG
ACGGGCCTGCATGTGTGCTTTCCATGTCACTGCATTGCCATGTATAATTT
CTTTCCGATGGTCCCTGGGCATGTAATTTTTATGCACAGCATGCGAAACA
GCTCGTCCTCTTATTACTCTGTTGGTATTAAGGAGCCATTGTGCATGTAC
GGCGGCCATTTCGTACGCATATCCTCTAAACTTGgttgcctcctccgtcg
aaccctgccttttcctctgaGTAGCGTCCTTCTGCACTTGTTTTTCGTGC
CCTTGCCTGCGTTCGCGGTCGCAGTCTCTTGCCtgttttctccctctttt
tcctcatgCATGTGGTTCACGGCCCTTCCTTTGTTTTCCGACCCCACAGA
CACCCCTTCCTGGAGACCAGTCCTTTCCACTGCACGCTGTACGACGGGCT
CAACCGGCCCTGGACAAAAGAAGGGGCTCGGCCCACCACGCTGGAGGGAC
GTTCATGGCACGCAGAtatgcctcttcccctcgccaAAAAGATGATTGTC
GAGGCAGCGCAGGACCAGAGCGTGAGCAAAGAGATGTTAATGGCCGCCCT
ACACATGGTAGAGTACGATGCGGCCTTCGAAGCcggggcaaagggagggt
gggaggtggGCGATTTGGAGGGCGAGTGGCGTCTGGCTTTCAATGCGGAT
GCGCCCTTCTTGGAGAGCCGACGGGACAGGTGGGGGTATTTGATTcaggc
gcaggagaaggagggagaggcagaggaggaggtggcggtggtgggtcTGC
GTCTCGACACCCGCGCCTCGACCATTGTGCTGGACTCTTTGCAGGAACCC
CGGCCCAAGTCCTTTCAAGGAACGTTCTGGAAGGATCGCGGGGGAAAGGT
GCACGTGGATGTGACGCGCGTCCAGCTCTTAAAAGCCATGGACCCCgcga
atgaggaggaggaagcggtgggggaggccggggggggtcggCTCTTGCCC
GAGTCGGAGCTGCCGTTAATGGACGCCTTTTTGcgtccgggtagcttttt
cGAGGTGATCCAGGTAGACAAGCTTCATTTGGCCCTTCGCTACCACCTAG
GCGGGGCGCTTGAATCGTCGCTCTTGATTTTCAACAAGGTGGTGCCCTTC
Agtgcggaggcgggggggctgccagagggaggagagagtgtacagtggag
ggaggtcggcTCGACGGAAGCAGGGGCGGGAATCGAGGACAAGTCCGCCC
CAGAGGCCGAAGCCGAAGGCACTCATGGTAAGGACAGGTGGGGACATGTG
AAGAAAACCAACCGCGAGGGGCAGCCCCGGTATGCGAACGCAGAAGAACG
CCTGCAGCAATTGCGGCAGCGGAGGCGGATGCTTGGGGGCTACGATTCGT
TCTGGgagtacctggaggaggagaaagtgtcccttttcctggtcctcgcc
tttcccgcctttgtGAAGGCCAGTCCGCACCTGCTGGCCGCGGCCCATGT
CAAATGGATGCTGCTCCAGGAGATGGCGGGCTCCGCACTCCAGGCATGGG
GCGGGCAATCCTAG back to topCoding sequence (CDS) from alignment at CM002469.1:195211..197074+ >rna6658 ID=rna6658|Name=rna6658|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002469.1:195211..197074+ (Nannochloropsis gaditana)
ATGCCGAGTCGCATCTCCTACTTAGGCGTTGCATTTTCGTTGGCTGCCGC
CTCCTATCATtttgcttcttcttttcagCTTCGCATGACAGTCGGGGGTG
GTGTTCATCAGAAGCGTCGCAAAACTCTCAACAACCAGCACAAGGTACCT
CCTTCTGCGGTAGACACAATCAAGACCACGAAAACGACAGAGGAAGACAC
TACAAATAAGAGCAAACACCCCTTCCTGGAGACCAGTCCTTTCCACTGCA
CGCTGTACGACGGGCTCAACCGGCCCTGGACAAAAGAAGGGGCTCGGCCC
ACCACGCTGGAGGGACGTTCATGGCACGCAGAtatgcctcttcccctcgc
caAAAAGATGATTGTCGAGGCAGCGCAGGACCAGAGCGTGAGCAAAGAGA
TGTTAATGGCCGCCCTACACATGGTAGAGTACGATGCGGCCTTCGAAGCc
ggggcaaagggagggtgggaggtggGCGATTTGGAGGGCGAGTGGCGTCT
GGCTTTCAATGCGGATGCGCCCTTCTTGGAGAGCCGACGGGACAGGTGGG
GGTATTTGATTcaggcgcaggagaaggagggagaggcagaggaggaggtg
gcggtggtgggtcTGCGTCTCGACACCCGCGCCTCGACCATTGTGCTGGA
CTCTTTGCAGGAACCCCGGCCCAAGTCCTTTCAAGGAACGTTCTGGAAGG
ATCGCGGGGGAAAGGTGCACGTGGATGTGACGCGCGTCCAGCTCTTAAAA
GCCATGGACCCCgcgaatgaggaggaggaagcggtgggggaggccggggg
gggtcggCTCTTGCCCGAGTCGGAGCTGCCGTTAATGGACGCCTTTTTGc
gtccgggtagctttttcGAGGTGATCCAGGTAGACAAGCTTCATTTGGCC
CTTCGCTACCACCTAGGCGGGGCGCTTGAATCGTCGCTCTTGATTTTCAA
CAAGGTGGTGCCCTTCAgtgcggaggcgggggggctgccagagggaggag
agagtgtacagtggagggaggtcggcTCGACGGAAGCAGGGGCGGGAATC
GAGGACAAGTCCGCCCCAGAGGCCGAAGCCGAAGGCACTCATGGTAAGGA
CAGGTGGGGACATGTGAAGAAAACCAACCGCGAGGGGCAGCCCCGGTATG
CGAACGCAGAAGAACGCCTGCAGCAATTGCGGCAGCGGAGGCGGATGCTT
GGGGGCTACGATTCGTTCTGGgagtacctggaggaggagaaagtgtccct
tttcctggtcctcgcctttcccgcctttgtGAAGGCCAGTCCGCACCTGC
TGGCCGCGGCCCATGTCAAATGGATGCTGCTCCAGGAGATGGCGGGCTCC
GCACTCCAGGCATGGGGCGGGCAATCCTAGATGCCGAGTCGCATCTCCTA
CTTAGGCGTTGCATTTTCGTTGGCTGCCGCCTCCTATCATtttgcttctt
cttttcagCTTCGCATGACAGTCGGGGGTGGTGTTCATCAGAAGCGTCGC
AAAACTCTCAACAACCAGCACAAGGTACCTCCTTCTGCGGTAGACACAAT
CAAGACCACGAAAACGACAGAGGAAGACACTACAAATAAGAGCAAACACC
CCTTCCTGGAGACCAGTCCTTTCCACTGCACGCTGTACGACGGGCTCAAC
CGGCCCTGGACAAAAGAAGGGGCTCGGCCCACCACGCTGGAGGGACGTTC
ATGGCACGCAGAtatgcctcttcccctcgccaAAAAGATGATTGTCGAGG
CAGCGCAGGACCAGAGCGTGAGCAAAGAGATGTTAATGGCCGCCCTACAC
ATGGTAGAGTACGATGCGGCCTTCGAAGCcggggcaaagggagggtggga
ggtggGCGATTTGGAGGGCGAGTGGCGTCTGGCTTTCAATGCGGATGCGC
CCTTCTTGGAGAGCCGACGGGACAGGTGGGGGTATTTGATTcaggcgcag
gagaaggagggagaggcagaggaggaggtggcggtggtgggtcTGCGTCT
CGACACCCGCGCCTCGACCATTGTGCTGGACTCTTTGCAGGAACCCCGGC
CCAAGTCCTTTCAAGGAACGTTCTGGAAGGATCGCGGGGGAAAGGTGCAC
GTGGATGTGACGCGCGTCCAGCTCTTAAAAGCCATGGACCCCgcgaatga
ggaggaggaagcggtgggggaggccggggggggtcggCTCTTGCCCGAGT
CGGAGCTGCCGTTAATGGACGCCTTTTTGcgtccgggtagctttttcGAG
GTGATCCAGGTAGACAAGCTTCATTTGGCCCTTCGCTACCACCTAGGCGG
GGCGCTTGAATCGTCGCTCTTGATTTTCAACAAGGTGGTGCCCTTCAgtg
cggaggcgggggggctgccagagggaggagagagtgtacagtggagggag
gtcggcTCGACGGAAGCAGGGGCGGGAATCGAGGACAAGTCCGCCCCAGA
GGCCGAAGCCGAAGGCACTCATGGTAAGGACAGGTGGGGACATGTGAAGA
AAACCAACCGCGAGGGGCAGCCCCGGTATGCGAACGCAGAAGAACGCCTG
CAGCAATTGCGGCAGCGGAGGCGGATGCTTGGGGGCTACGATTCGTTCTG
Ggagtacctggaggaggagaaagtgtcccttttcctggtcctcgcctttc
ccgcctttgtGAAGGCCAGTCCGCACCTGCTGGCCGCGGCCCATGTCAAA
TGGATGCTGCTCCAGGAGATGGCGGGCTCCGCACTCCAGGCATGGGGCGG
GCAATCCTAG back to top
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