rna6657, rna6657 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6657
Unique Name	rna6657
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1130
Alignment location	CM002469.1:192806..194591 -

Link to JBrowse

Properties


Property Name	Value
Product	ruvb-like 2
Orig transcript id	gnl\|cribi\|Naga_100040g5.2028.mrna
Orig protein id	gnl\|cribi\|Naga_100040g5.2028
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:192806..194591 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g5	gene6435	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6657	rna6657-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24030.1	cds6641	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:192806..194591-
coding sequence from alignment at CM002469.1:192806..194591-

mRNA sequence

>rna6657 ID=rna6657|Name=rna6657|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
CGTCCATTGCGTCCGAACCCCCGTGCATCCAGATGTTCCGATGACAAGCA
CGCTGTCGCCGGTTTGGCAACACTTGGTATCGCGAAAGGGAGTGCTGGAC
TTACATGTCCTTCGTTGCCTTCAGAAAACAGGACATTTGCACCACATACG
CATGCACGGATCATGCTTTCTTAACAAAATATTTCAAATTTATTTAATCA
TGCAGCTAAGCTTACTATATTTCATTCACTGGCAGGTTGCGACAGCAATA
ATGGTGCCCGATAAGCCAGTTTCCCCTCCTCCTCCACCTCCCCCCTCCCG
GGAAACCACTGCATCGGAAGCCGCAAAACCAGGCAAGCGGGCAAAGAGGT
GGTTTCCACTTGAAAGCAATCCATCAGTCATGCAGAAATACGTGCTAAGC
CTCGGCCTCATCCCCACTTTCTACAAATTTACCGATGTTCTCTGCACTGA
GGAGTGGGCGCTTGAGATGGTTGTTCCTCCTGTCCTTGCCCTCATCTTCC
TGTACCCCATCAAGCCTGCGAACGAGATTTTCCGTCAAGAGGAAGATGCC
CGTATCAAAGCGCATGGGCAAATTGTCTCGCCACGCCTGTTTTTCACCAA
GCAAACCGTCGGGAACGCTTGCGGGACGGTCGGGCTCCTGCACGCTCTCC
TCAACAACAAGGACAAACTCGAGTTCCGAGAGGGAAGCTTCCTGGAAAGT
TTTGCAGAGCGGACGCAAGACAAGACCCCTGATGAGCGGGCGGTGATTCT
GGAGGAGGACGAAGGCTTGGATGCCGCCCATGGTTGCGCCGCGGCCGACG
GCCAAAGCCAGCAAGTCCCGATGGAAGAAGCAATCAATACGCACTTCGTC
ATTTTCGTCGAGAAGGATGGCTACCTGTACGAGCTGGACGGGCGGAAAAA
TTTCCCCATCAACCACGGGAAATCCTCCCCGGAGACGCTCCTGCAGGACG
CGATGGCGGTGGTGCGACGAGTGATAGCGATGGACCCACAGGAGCTCAAG
TTCACGATGGTGGCGTTGAGCAGCGCCGCGGGGGGGCAGGAGGAAGAGTG
AGAGGGGTCAAGGGGGAAAAGGAGAGCAAGGGCAGTGAAGAGGGGCAATG
AAAGAAATATGGCCGGGCATTTGTCTCTGC

protein sequence of rna6657

>rna6657-protein ID=rna6657-protein|Name=rna6657|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MADLGLGKETTKDLTRIERIGAHSHIRGLGLDDALEPREVSQGMVGQTGA
RRAAGIVYKMIKEGKIAGRAILLAGQPGTGKTAVAMGLAQALGEGTPFTT
IAGSEIFSLEMSKTEAMTQAFRRSIGVRIMEETEIIEGEVVEVQVDTPAG
GGAKTGRITLCTTEMETVYDLGAKMIEALQKEKVSAGDVITIDKASGKIS
KLGRSFTRSRDYDAMGPQTRFVQCPEGELQKRKETVHVVSLHEIDVINSR
QQGFLALFAGDTGEIKGEVREQIDMKVAEWREEGKATVVPGVLFIDEVHM
LDIECFSWLNRALESDLAPVLIMATNRGMAQIRGTAYKSPHGIPIDLLDR
LMIISTTPYAEAEVRRILQIRCEEEDVEMSDDALELLTKIGMEASLRYAI
HMIMAASLVAHKRKAGEVDVQDIKRVYSLFVDVKRSTQFLVEYQQEFMFN
ELGGDDMEEEEEEEEEEEGEKAAVGEGREGAADMAED

mRNA from alignment at CM002469.1:192806..194591-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6657 ID=rna6657|Name=rna6657|organism=Nannochloropsis gaditana|type=mRNA|length=1786bp|location=Sequence derived from alignment at CM002469.1:192806..194591- (Nannochloropsis gaditana)
CGATTATAAGCAAGCAATACATTAAAAAATATACGCCACTATGGCGGACC
TGGGTCTGGGCAAGGTATGTTTCGAAGAGTTTCTAAACCGGCCTCCTAGG
TTTTTTCAAGAAACTAGTTTGAGAATGAGTGTTCGAGCACGGCATGGTAC
GATGCCGGTGGCTTCTATGTGATATTTTTGCTTAGTACGTTTTCCTTTCG
TCGTTTTGTTCCTCACTCTTCTTTTCGCGCCTTCGTGGGTCGCTCCCCTC
TCTGCAGGAAACCACGAAAGACCTGACCCGTATCGAGCGGATCGGCGCTC
ACAGCCACATTCGCGGCCTGGGCCTGGACGATGCGCTAGAGCCTCGGGAA
GTTAGTCAAGGGATGGTCGGTCAAACAGGGGCACGCCGGGCTGCGGGGAT
AGTTTACAAAATGATCAAGGAAGGGAAGATTGCAGGGCGTGCCATCCTCC
TAGCCGGTCAACCTGGCACGGGGAAGACAGCCGTGGCCATGGGCTTGGCA
CAAGCACTGGGGGAAGGCACCCCCTTCACGACGATTGCGGGCTCGGAGAT
CTTTTCCCTGGAGATGTCCAAGACGGAGGCCATGACGCAGGCCTTCCGTC
GCAGCATCGGGGTGCGGATCATGGAGGAGACGGAGATCATCGAGGGGGAG
GTGGTGGAGGTCCAGGTGGACACGCCGGCGGGGGGTGGGGCCAAAACGGG
TAGGATCACCCTCTGCACCACGGAGATGGAGACTGTGTACGACCTGGGGG
CCAAGATGATCGAGGCGCTCCAGAAGGAGAAGGTCTCGGCGGGGGACGTG
ATCACCATTGACAAGGCGAGCGGGAAGATTAGCAAGCTGGGCCGGTCCTT
CACGCGCTCCCGGGACTACGATGCCATGGGCCCCCAAACGCGCTTCGTGC
AGTGCCCGGAGGGGGAGCTCCAGAAACGGAAGGAGACGGTCCACGTGGTC
AGTCTCCACGAGATCGACGTCATCAATTCCCGGCAACAGGGGTTCCTGGC
CCTCTTCGCGGGGGACACGGGGGAGATCAAGGGGGAGGTGCGGGAGCAGA
TCGACATGAAGGTGGCAGAGTGGCGGGAGGAGGGGAAAGCGACCGTGGTG
CCAGGCGTCCTTTTCATCGACGAGGTCCACATGCTGGACATCGAGTGCTT
CTCCTGGCTCAACCGGGCCCTTGAAAGCGACTTGGCGCCCGTCTTGATCA
TGGCCACGAACCGAGGGATGGCTCAGATTCGAGGCACAGCCTACAAGAGC
CCGCACGGTATTCCCATCGACCTCTTGGACCGGCTCATGATTATTAGCAC
CACCCCTTACGCCGAGGCGGAGGTGCGGAGAATCTTGCAGATTCGATGCG
AAGAGGAGGACGTCGAGATGAGCGATGATGCACTGGAACTTTTGACCAAA
ATAGGAATGGAAGCTTCGTTACGGTACGCCATTCACATGATCATGGCCGC
CTCGCTCGTTGCCCACAAGCGAAAAGCCGGTGAGGTGGATGTACAAGACA
TCAAGAGGGTGTATTCATTATTCGTAGATGTCAAGCGGTCGACGCAGTTT
CTGGTGGAGTACCAGCAGGAGTTCATGTTCAATGAACTGGGGGGGGATGA
CATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGAAAGCAG
CGGTAGGGGAGGGGAGGGAGGGAGCGGCGGACATGGCAGAGGATTAAGGA
CCAAGTTAAGGGAGTAAAAGCCCGTTAGCTATAGTCACTACACAAATAAA
GCGGTAATAAAGTTCAGTTTTGCCCCATTTCAATGG

Coding sequence (CDS) from alignment at CM002469.1:192806..194591-

>rna6657 ID=rna6657|Name=rna6657|organism=Nannochloropsis gaditana|type=CDS|length=2928bp|location=Sequence derived from alignment at CM002469.1:192806..194591- (Nannochloropsis gaditana)
GAAACCACGAAAGACCTGACCCGTATCGAGCGGATCGGCGCTCACAGCCA
CATTCGCGGCCTGGGCCTGGACGATGCGCTAGAGCCTCGGGAAGTTAGTC
AAGGGATGGTCGGTCAAACAGGGGCACGCCGGGCTGCGGGGATAGTTTAC
AAAATGATCAAGGAAGGGAAGATTGCAGGGCGTGCCATCCTCCTAGCCGG
TCAACCTGGCACGGGGAAGACAGCCGTGGCCATGGGCTTGGCACAAGCAC
TGGGGGAAGGCACCCCCTTCACGACGATTGCGGGCTCGGAGATCTTTTCC
CTGGAGATGTCCAAGACGGAGGCCATGACGCAGGCCTTCCGTCGCAGCAT
CGGGGTGCGGATCATGGAGGAGACGGAGATCATCGAGGGGGAGGTGGTGG
AGGTCCAGGTGGACACGCCGGCGGGGGGTGGGGCCAAAACGGGTAGGATC
ACCCTCTGCACCACGGAGATGGAGACTGTGTACGACCTGGGGGCCAAGAT
GATCGAGGCGCTCCAGAAGGAGAAGGTCTCGGCGGGGGACGTGATCACCA
TTGACAAGGCGAGCGGGAAGATTAGCAAGCTGGGCCGGTCCTTCACGCGC
TCCCGGGACTACGATGCCATGGGCCCCCAAACGCGCTTCGTGCAGTGCCC
GGAGGGGGAGCTCCAGAAACGGAAGGAGACGGTCCACGTGGTCAGTCTCC
ACGAGATCGACGTCATCAATTCCCGGCAACAGGGGTTCCTGGCCCTCTTC
GCGGGGGACACGGGGGAGATCAAGGGGGAGGTGCGGGAGCAGATCGACAT
GAAGGTGGCAGAGTGGCGGGAGGAGGGGAAAGCGACCGTGGTGCCAGGCG
TCCTTTTCATCGACGAGGTCCACATGCTGGACATCGAGTGCTTCTCCTGG
CTCAACCGGGCCCTTGAAAGCGACTTGGCGCCCGTCTTGATCATGGCCAC
GAACCGAGGGATGGCTCAGATTCGAGGCACAGCCTACAAGAGCCCGCACG
GTATTCCCATCGACCTCTTGGACCGGCTCATGATTATTAGCACCACCCCT
TACGCCGAGGCGGAGGTGCGGAGAATCTTGCAGATTCGATGCGAAGAGGA
GGACGTCGAGATGAGCGATGATGCACTGGAACTTTTGACCAAAATAGGAA
TGGAAGCTTCGTTACGGTACGCCATTCACATGATCATGGCCGCCTCGCTC
GTTGCCCACAAGCGAAAAGCCGGTGAGGTGGATGTACAAGACATCAAGAG
GGTGTATTCATTATTCGTAGATGTCAAGCGGTCGACGCAGTTTCTGGTGG
AGTACCAGCAGGAGTTCATGTTCAATGAACTGGGGGGGGATGACATGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGAAAGCAGCGGTAGG
GGAGGGGAGGGAGGGAGCGGCGGACATGGCAGAGGATTAAATGGCGGACC
TGGGTCTGGGCAAGGAAACCACGAAAGACCTGACCCGTATCGAGCGGATC
GGCGCTCACAGCCACATTCGCGGCCTGGGCCTGGACGATGCGCTAGAGCC
TCGGGAAGTTAGTCAAGGGATGGTCGGTCAAACAGGGGCACGCCGGGCTG
CGGGGATAGTTTACAAAATGATCAAGGAAGGGAAGATTGCAGGGCGTGCC
ATCCTCCTAGCCGGTCAACCTGGCACGGGGAAGACAGCCGTGGCCATGGG
CTTGGCACAAGCACTGGGGGAAGGCACCCCCTTCACGACGATTGCGGGCT
CGGAGATCTTTTCCCTGGAGATGTCCAAGACGGAGGCCATGACGCAGGCC
TTCCGTCGCAGCATCGGGGTGCGGATCATGGAGGAGACGGAGATCATCGA
GGGGGAGGTGGTGGAGGTCCAGGTGGACACGCCGGCGGGGGGTGGGGCCA
AAACGGGTAGGATCACCCTCTGCACCACGGAGATGGAGACTGTGTACGAC
CTGGGGGCCAAGATGATCGAGGCGCTCCAGAAGGAGAAGGTCTCGGCGGG
GGACGTGATCACCATTGACAAGGCGAGCGGGAAGATTAGCAAGCTGGGCC
GGTCCTTCACGCGCTCCCGGGACTACGATGCCATGGGCCCCCAAACGCGC
TTCGTGCAGTGCCCGGAGGGGGAGCTCCAGAAACGGAAGGAGACGGTCCA
CGTGGTCAGTCTCCACGAGATCGACGTCATCAATTCCCGGCAACAGGGGT
TCCTGGCCCTCTTCGCGGGGGACACGGGGGAGATCAAGGGGGAGGTGCGG
GAGCAGATCGACATGAAGGTGGCAGAGTGGCGGGAGGAGGGGAAAGCGAC
CGTGGTGCCAGGCGTCCTTTTCATCGACGAGGTCCACATGCTGGACATCG
AGTGCTTCTCCTGGCTCAACCGGGCCCTTGAAAGCGACTTGGCGCCCGTC
TTGATCATGGCCACGAACCGAGGGATGGCTCAGATTCGAGGCACAGCCTA
CAAGAGCCCGCACGGTATTCCCATCGACCTCTTGGACCGGCTCATGATTA
TTAGCACCACCCCTTACGCCGAGGCGGAGGTGCGGAGAATCTTGCAGATT
CGATGCGAAGAGGAGGACGTCGAGATGAGCGATGATGCACTGGAACTTTT
GACCAAAATAGGAATGGAAGCTTCGTTACGGTACGCCATTCACATGATCA
TGGCCGCCTCGCTCGTTGCCCACAAGCGAAAAGCCGGTGAGGTGGATGTA
CAAGACATCAAGAGGGTGTATTCATTATTCGTAGATGTCAAGCGGTCGAC
GCAGTTTCTGGTGGAGTACCAGCAGGAGTTCATGTTCAATGAACTGGGGG
GGGATGACATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAG
AAAGCAGCGGTAGGGGAGGGGAGGGAGGGAGCGGCGGACATGGCAGAGGA
TTAAATGGCGGACCTGGGTCTGGGCAAG

Synonyms

Publications