rna6656, rna6656 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6656
Unique Name	rna6656
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3654
Alignment location	CM002469.1:191328..192457 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin carboxyl-terminal hydrolase isozyme l3
Orig transcript id	gnl\|cribi\|Naga_100040g4.1997.mrna
Orig protein id	gnl\|cribi\|Naga_100040g4.1997
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:191328..192457 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g4	gene6434	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23999.1	cds6640	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6656	rna6656-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:191328..192457-
coding sequence from alignment at CM002469.1:191328..192457-

mRNA sequence

>rna6656 ID=rna6656|Name=rna6656|organism=Nannochloropsis gaditana|type=mRNA|length=3654bp
CGCAATTCATGCACATCAGTACGAGGCTGAGACCGTGAAGCATATGCCCT
GGCGGCAGGTAGAATGGAAAGCGCATAGGACTTGGTTTCCCAGGGATTTG
GAGGGAGAGGCTGCGGCGATGCAGCATCAGGCACAATAAATACATGCCAG
CCCCTTGTCGCCGAAACTCCACATGGACACTCAATAGAAACGTAACTGTT
GACTTGAAAGTGGCGTATTCGTTCACGTCCTTCCCCAAAAAACTTCTGGC
ATGAAGCCCGCCAGCCCCCCGGCTCCTGCAAGCCCTGCCTTGCCGGACCT
GATCGCCTCCCTCGACCGACTTTCCTGCTCCTCTCCATCCACAAACTCCA
CGAAGTGCACCCCACTCGCATCATCGGCCTCTTCTCCTCCCTTTCAAGCG
ACGATTGCGGAGGCATTGACCCAGGCTGAAGTCACGTTGGCCTCTCCCGC
AACACCGCCTCAAAGTATCATTAGTTTCCTCCTATTTCTCTTCCGCGACA
TTTTGCCCCGTCTCCTCGACAGCCACGATACTGCTGGGCCCGAACATGAT
CGGCAGGAAAGACACGAAGCGGACCTGTGTGGATTTCCGGAGACCGTGCA
GGTCCTAGAGCACTTTCTGAAGCCAGGACAAGCGGGCACTTCGCCTCCCA
ACCTCCCCAGCTGGTGCCTCTTCGTCGCGCTCTCGGAGGCATTCTCCTCC
CCTCCCTCCCGTCCCATCTCCACGTCCACAATCGATCCACAACCGCGCGT
CTCATCCCATGCCCGACCCGCCCTTCCCTCCTCATCAACGCCCTCCGGCA
CCTTCCTCCTGCGCGCCCTCGAAAGCTTCCTCGCCCCTCCCCCCGCCGAC
GGCTTCACTCGCATGGTAGATGAGCTCTGCCAGCAATCTCTCGGCCCAAG
CTCCGAGGCCAGCGCCCGCTCCGCCATCGATCGCGTCCTCCAGTCCCTCT
CCCTCCTTCCCGTCCGGCTCGCCAACCGGCTCCAGGGCGCCCTCCCCCCT
CTCTTCAACCTCCCAGCCCTCTACACCGCCTTTACCGACCGCCTCCTCAC
TCGCTTCCTCGCCTCCCCCCCTTCTTCCCTCCCTCCCTCCCTGCTTCTCC
TTTGGGGCTGCTTGGTGCTCAAAGCCTGTAAGACGGGCCAAGCCGACCTC
CCTGCCTCCCGGTGGCTCGACCTGGGGCTTTCCTCCCCCTTCCCCTCCCC
CTCCCCCTCCCTCCTCGTCGAATCTATCCCTCTCCCCGCCCTCGAGCCCT
TCATCCTCGCCCTTCTCCGACGTCTGGTTGTCCTCCTCTTCCCTCCTACC
CCTTCTTCCTTCTCCGTCTCCCTGCCCCACGCACAAGGCGTCCTCCACTG
CCTCCTTCCCTCCCTCCTCCCCTCCTCCCCCGTTGCGCCGGCCCTGAGGA
CGATCCTCCTCGACAAGGTCCTCCTCTGCCCCTCCCTTCCTCCCTTCTCC
CCTCTCCTCCTCCACCCCCGCACCACCGCCCTCCTCCTCACGGACCTTCT
CGCCTCCTCCCTCCCCCCCTCCCTCCTCCCCTCCCGCCTCCTCCTTCCCC
TCGCCACCCTCTGGCAAGAGCGGCGCTTCATCCTCCGTTCCGATCTGTCC
CGCCAAGAACTCGTCACCCACGCCCTCCTTCGCGCCCTCCACCTCCTCCA
CCGCCCCCCGGTCACTCCCTCCGACGCCCTCAGCGGACGCGCGGCCCTGG
AAGGGGAAGCGGGTCTGATGCCGGCCCTGGTGGAAGGCGTAAGCGCACAT
TTGGGCTCGGCTTTGGCCTTGGTCCGGGAGCAGGGGATGCGGGTGGCAGA
GGCCTTCGCCGTCCTCATGGGCCAGGACTTGAAGTTTGAAGAGTTGGACG
GGAAGAGGGAGGGGGAGGGGGAGGGGGAGGAGGAGGGGGAGGTCCGGATC
GATGGAAGCGAAGAGAGATCGGAAAGGGGGCCGTCGGGGGTGGAAGAAGG
GGGGGGCGAGGAGGTAAGGAGGAAGGAGGAAGAGGAGGAGGAGGAGGGAG
CCCCGTGGTACGAGCCGTTGGATTTATCCGACGACGAAGCCGACCTGGCG
GCCGCTCCGCCCCCTCGGTACTTACGGCGCCTCTTGGATGCCTTGCGCCT
TCGGGACGAGGAGGGCGCTCCGGAGAAAGTGCGCGCCGCTTTGACGGAAG
CTGCCGCCTTGATCCGACGACTCCCGGTGGACCTGCCCGACCTAGGCAGG
AACTTGGCCCGGGAGCTCCTGACGTTGGAAAACCGTTTCAATTTCGAAAA
TTTTGAACATTTGAAACGCGAAGCCTTGGTTGCCTTGGTGGCCAGCTCCC
CCGGGGAAGTGGCTCCGGCCTTAGCGGTTTTGGCCTACGACGGGAACATG
GCTTTCGGGACGCGATTGGAGGCGTTGGATTTGATGGTGCGAGGAGCTAG
GGAACTGGGCGGGAAGGAGGGCGGGAAGGAGGGTGGGAAGGAGGGCGGGA
AGGAGGGCGGGAAGGAGGGCGGGAAGGAGGTTGGGAAGGAGGGCGGGAAG
GAGGGCGGGGAGGAGGGTGCGAGGGGAGAAGAGAGGGCGGGCACCAGGCC
CCGCACGCAAGGAAAACGGCGGCTGGTGTCCGCGTCAGGGCAGGTCTTGA
CCTCAAGTAGCCGCCAAGAAACGCTGTTGCCCCAAGGAGACCCTGCGACA
GCCGTAGAGCCTGCCCCAAATCCCCGCCCGGACAAAGCGGAGGAGGTGGG
GGGGACCTCGGATCTGACCCGTCGGTGGGGCTACCGCCGGCGTCCGCCCC
CCCGCATGATTCGGAACCGGTTCGCCCCCGTGGCCGCCCCTGCGTTTTTT
GAACCTCTACTGGCGGCGATGATCGAGTCCTGCTCACCCCGCCCTTCCTC
AGGCCCGACCTCGCCCCCTTCCTCCTTCCTGAGCGTCGCCTCCCCCTCCA
CCTCCCCCCCGTCTCGCCCTCCTTCCATTGCCCTCCACATCCTCCCTCCG
CTTTCCCCGTCCTCCACCCTCCCTCCCTCCTCCCCCTGCCCCACCTTGTG
GGCCCGGGACTCGGACCAGGCCCTCGCCCTCTCCCAGACCATCCATGCGC
TCGCCACCTTTGTCGACTGCGCCGGACCCTTTAATCCCGGCACCCCCCAA
CTGGCCGAGGCCCTGCTAACGGTCGCCTGGCCATTACGCACCAGCCGTTT
CCCGGAACTCCGTCGGGCGGTTTTGTTGGCCGTTGCCTGCGCCATGACCT
TTATGAACATGGAGTGGTTCGTCGGAGAAGGGAGGGGGGGAGGGCAGGAG
GGAGGAAAAGCATTGCGGGCGATGATGGAATGGACGGCAGCGACGGGGGA
GGGGGACCCGGACGAGGAATGCCGCAAGCTGGCTCGTACCTTGAGTGGGG
GGGGGGGGCACAGTAAGGGTAAGGGGTTGGGCTTGTTAGCTTCGTGAGGG
AAGGGAGGGGGTGGGTGGCCAGGGGGGACGGGGCCCTGGCTTGTGCTCGG
TAAGAAAGAAGGAGTCAATGTCTCTGACTAATGCAAAGTGGGGGGGCAGG
GTTCTGAAGAAGGTGCAATCTTGATGAACGACCGAACGAATTGACAGGTC
TGCCCCCAAAAACGTAACGACAAGGCTTAAAAAGCGACGCAGAGACAAAT
GCCCGGCCATATTTCTTTCATTGCCCCTCTTCACTGCCCTTGCTCTCCTT
TTCC

protein sequence of rna6656

>rna6656-protein ID=rna6656-protein|Name=rna6656|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQI
YLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKR
AKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLA
LIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLL
HALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCA
AADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETL
LQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE

mRNA from alignment at CM002469.1:191328..192457-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6656 ID=rna6656|Name=rna6656|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002469.1:191328..192457- (Nannochloropsis gaditana)
CGTCCATTGCGTCCGAACCCCCGTGCATCCAGATGTTCCGATGACAAGCA
CGCTGTCGCCGGTTTGGCAACACTTGGTATCGCGAAAGGGAGTGCTGGAC
TTACATGTCCTTCGTTGCCTTCAGAAAACAGGACATTTGCACCACATACG
CATGCACGGATCATGCTTTCTTAACAAAATATTTCAAATTTATTTAATCA
TGCAGCTAAGCTTACTATATTTCATTCACTGGCAGGTTGCGACAGCAATA
ATGGTGCCCGATAAGCCAGTTTCCCCTCCTCCTCCACCTCCCCCCTCCCG
GGAAACCACTGCATCGGAAGCCGCAAAACCAGGCAAGCGGGCAAAGAGGT
GGTTTCCACTTGAAAGCAATCCATCAGTCATGCAGAAATACGTGCTAAGC
CTCGGCCTCATCCCCACTTTCTACAAATTTACCGATGTTCTCTGCACTGA
GGAGTGGGCGCTTGAGATGGTTGTTCCTCCTGTCCTTGCCCTCATCTTCC
TGTACCCCATCAAGCCTGCGAACGAGATTTTCCGTCAAGAGGAAGATGCC
CGTATCAAAGCGCATGGGCAAATTGTCTCGCCACGCCTGTTTTTCACCAA
GCAAACCGTCGGGAACGCTTGCGGGACGGTCGGGCTCCTGCACGCTCTCC
TCAACAACAAGGACAAACTCGAGTTCCGAGAGGGAAGCTTCCTGGAAAGT
TTTGCAGAGCGGACGCAAGACAAGACCCCTGATGAGCGGGCGGTGATTCT
GGAGGAGGACGAAGGCTTGGATGCCGCCCATGGTTGCGCCGCGGCCGACG
GCCAAAGCCAGCAAGTCCCGATGGAAGAAGCAATCAATACGCACTTCGTC
ATTTTCGTCGAGAAGGATGGCTACCTGTACGAGCTGGACGGGCGGAAAAA
TTTCCCCATCAACCACGGGAAATCCTCCCCGGAGACGCTCCTGCAGGACG
CGATGGCGGTGGTGCGACGAGTGATAGCGATGGACCCACAGGAGCTCAAG
TTCACGATGGTGGCGTTGAGCAGCGCCGCGGGGGGGCAGGAGGAAGAGTG
AGAGGGGTCAAGGGGGAAAAGGAGAGCAAGGGCAGTGAAGAGGGGCAATG
AAAGAAATATGGCCGGGCATTTGTCTCTGC

Coding sequence (CDS) from alignment at CM002469.1:191328..192457-

>rna6656 ID=rna6656|Name=rna6656|organism=Nannochloropsis gaditana|type=CDS|length=1011bp|location=Sequence derived from alignment at CM002469.1:191328..192457- (Nannochloropsis gaditana)
ATGACAAGCACGCTGTCGCCGGTTTGGCAACACTTGGTATCGCGAAAGGG
AGTGCTGGACTTACATGTCCTTCGTTGCCTTCAGAAAACAGGACATTTGC
ACCACATACGCATGCACGGATCATGCTTTCTTAACAAAATATTTCAAATT
TATTTAATCATGCAGCTAAGCTTACTATATTTCATTCACTGGCAGGTTGC
GACAGCAATAATGGTGCCCGATAAGCCAGTTTCCCCTCCTCCTCCACCTC
CCCCCTCCCGGGAAACCACTGCATCGGAAGCCGCAAAACCAGGCAAGCGG
GCAAAGAGGTGGTTTCCACTTGAAAGCAATCCATCAGTCATGCAGAAATA
CGTGCTAAGCCTCGGCCTCATCCCCACTTTCTACAAATTTACCGATGTTC
TCTGCACTGAGGAGTGGGCGCTTGAGATGGTTGTTCCTCCTGTCCTTGCC
CTCATCTTCCTGTACCCCATCAAGCCTGCGAACGAGATTTTCCGTCAAGA
GGAAGATGCCCGTATCAAAGCGCATGGGCAAATTGTCTCGCCACGCCTGT
TTTTCACCAAGCAAACCGTCGGGAACGCTTGCGGGACGGTCGGGCTCCTG
CACGCTCTCCTCAACAACAAGGACAAACTCGAGTTCCGAGAGGGAAGCTT
CCTGGAAAGTTTTGCAGAGCGGACGCAAGACAAGACCCCTGATGAGCGGG
CGGTGATTCTGGAGGAGGACGAAGGCTTGGATGCCGCCCATGGTTGCGCC
GCGGCCGACGGCCAAAGCCAGCAAGTCCCGATGGAAGAAGCAATCAATAC
GCACTTCGTCATTTTCGTCGAGAAGGATGGCTACCTGTACGAGCTGGACG
GGCGGAAAAATTTCCCCATCAACCACGGGAAATCCTCCCCGGAGACGCTC
CTGCAGGACGCGATGGCGGTGGTGCGACGAGTGATAGCGATGGACCCACA
GGAGCTCAAGTTCACGATGGTGGCGTTGAGCAGCGCCGCGGGGGGGCAGG
AGGAAGAGTGA

Synonyms

Publications