EWM23999.1, cds6640 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|585105286|gb|EWM23999.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana]) HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336
MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE
Sbjct: 1 MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|553184487|ref|XP_005854095.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana CCMP526] >gi|422294963|gb|EKU22262.1| ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 462.611 bits (1189), Expect = 6.398e-163 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 114 MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336
MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE
Sbjct: 1 MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 223
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|698794468|ref|XP_009830263.1| (hypothetical protein H257_06651 [Aphanomyces astaci] >gi|574114852|gb|ETV80339.1| hypothetical protein H257_06651 [Aphanomyces astaci]) HSP 1 Score: 267.7 bits (683), Expect = 7.654e-86 Identity = 133/238 (55.88%), Postives = 171/238 (71.85%), Query Frame = 0
Query: 94 AAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTF-YKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
AA +AKRWFPLESNP VM +Y+ +G+ + F DV T++WALEMV+ PVL ++ L+PIKPA E ++E RI+ GQIVS +++ KQTVGNACGTVG+LHAL N +D L R GSFL SF +T KTPDE A IL+ D+ ++ H AA DGQS+Q+ +++ INTHFV F DG+LYELDGRK FPINHG SSPETLL DA AV+R+ +A D E++FT+VAL+ A
Sbjct: 2 AAATTTKAKRWFPLESNPQVMNEYIRRMGIAEDAEFAFCDVYSTDDWALEMVLRPVLGVVMLFPIKPATEDHAKQERERIEKDGQIVSKNVYYMKQTVGNACGTVGILHALGNARDYLPPRHGSFLSSFFSKTDGKTPDEIAAILQADDEIEETHASAAQDGQSEQLEHVDDPINTHFVCFSVVDGHLYELDGRKEFPINHGPSSPETLLGDACAVIRQFMARDEGEVRFTIVALAKA 239
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|673014232|ref|XP_008861077.1| (hypothetical protein H310_00181 [Aphanomyces invadans] >gi|574482675|gb|ETW09666.1| hypothetical protein H310_00181 [Aphanomyces invadans]) HSP 1 Score: 264.233 bits (674), Expect = 1.610e-84 Identity = 131/235 (55.74%), Postives = 173/235 (73.62%), Query Frame = 0
Query: 98 GKRAKRWFPLESNPSVMQKYVLSLGLIP--TFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
+AKRWFPLESNP VM +Y+ +G IP + F D+ T+EWALEMV+ PVL ++ L+PIKP +E+ +E+ RI+ GQIVSP ++F KQTVGNACGTVG+LHAL N KD L R+GSFL SF +T KTPDE A IL++D+ ++ H AA +GQS+Q+ +++ INTHFV F DG+LYELDGRK FP+NHG SS ETLL+DA V+R+ +A D E++FT+VAL+ A
Sbjct: 4 ASKAKRWFPLESNPQVMNEYIRRMG-IPEDADFAFCDLYSTDEWALEMVLRPVLGVVMLFPIKPVSELHAKEQLERIEKEGQIVSPNVYFMKQTVGNACGTVGILHALGNAKDYLPPRDGSFLSSFFSKTVGKTPDEIAAILQDDDEIEETHASAAQEGQSEQLERVDDPINTHFVCFSVVDGHLYELDGRKKFPVNHGPSSQETLLEDACRVIRQFMARDEGEVRFTIVALAKA 237
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|669140606|ref|XP_008605871.1| (hypothetical protein SDRG_02084 [Saprolegnia diclina VS20] >gi|530742785|gb|EQC41027.1| hypothetical protein SDRG_02084 [Saprolegnia diclina VS20]) HSP 1 Score: 261.536 bits (667), Expect = 2.196e-83 Identity = 128/233 (54.94%), Postives = 172/233 (73.82%), Query Frame = 0
Query: 100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAA 330
+AKRWFPLESNP VM +Y +GL + ++F DV TE+WAL+MV+ PVLA+I L+PIK E + +EE RI+ GQ+VSP +++ KQTVGNACGTVG+LHAL N D + ++ GSFL++F E+T+ KTPDE AVILE D+ L+ H AA +GQS+Q+ +++ INTHFV F DG+LYELDGRK F INHG SS ETLL+DA V++ + D E++FT+VAL+S +
Sbjct: 8 KAKRWFPLESNPQVMNEYAKRMGLPADSAFEFCDVYSTEDWALDMVLRPVLAVIMLFPIKTHTEAYAKEERQRIEVSGQVVSPNVYYMKQTVGNACGTVGILHALGNVGDYVAYQPGSFLQTFFEKTRTKTPDEIAVILEGDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFCTVDGHLYELDGRKAFAINHGPSSRETLLEDACRVIQSFMQRDAGEVRFTIVALASKS 240
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|813171600|ref|XP_012204555.1| (hypothetical protein SPRG_10207 [Saprolegnia parasitica CBS 223.65] >gi|641530557|gb|KDO24674.1| hypothetical protein SPRG_10207 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 257.684 bits (657), Expect = 9.807e-82 Identity = 127/229 (55.46%), Postives = 170/229 (74.24%), Query Frame = 0
Query: 100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVAL 326
+AKRWFPLESNP VM +Y +GL + ++F DV TE+WAL+MV+ PVLA+I L+PIK E + +EE RI+A GQ+VSP +++ KQTVGNACGTVG+LHAL N D + ++ GSFL++F E+T+ KTP+E AVILE D+ L+ H AA +GQS+Q+ +++ INTHFV F D +LYELDGRK FPINHG SS ETLL+DA V++ + D E++FT+VAL
Sbjct: 8 KAKRWFPLESNPQVMNEYAKRMGLPADSAFEFCDVYSTEDWALDMVLRPVLAVIMLFPIKTHTEAYAKEERQRIEASGQVVSPNVYYMKQTVGNACGTVGILHALGNVGDYVAYQPGSFLQTFFEKTRAKTPEEIAVILEGDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFCTVDDHLYELDGRKAFPINHGPSSRETLLEDACRVIQSFMQRDDGEVRFTIVAL 236
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|632947214|ref|XP_007888940.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 isoform X2 [Callorhinchus milii]) HSP 1 Score: 242.662 bits (618), Expect = 4.372e-76 Identity = 110/229 (48.03%), Postives = 164/229 (71.62%), Query Frame = 0
Query: 101 AKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
++RW PLESNP VM ++ LG++P+ ++F DV + L MV PV +++ L+P+ FRQEE+++IK+ GQ VSP+++F KQT+ NACGTVGL+HAL NN+DKLEF S ++ F +R+ D TP+E+A LE+DE + H +A +GQ++ ++E ++ HF+ FV DG+LYELDGRK FPINHG++S +T L+DA+ + ++ + DP EL+FT+VALS A
Sbjct: 3 SQRWLPLESNPDVMNQFTRQLGVLPS-WQFGDVFGMDPELLSMVPRPVCSILLLFPVTEKYGTFRQEEESKIKSMGQEVSPQVYFMKQTISNACGTVGLIHALANNQDKLEFEANSAIKQFLDRSSDMTPEEKAKYLEKDESIRVTHESSAQEGQTETPSLDEKVDLHFITFVNIDGHLYELDGRKPFPINHGQTSTDTFLEDAVEICKKFMERDPGELRFTVVALSKA 230
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|873231253|emb|CEM08822.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 240.35 bits (612), Expect = 4.147e-75 Identity = 121/232 (52.16%), Postives = 157/232 (67.67%), Query Frame = 0
Query: 99 KRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEA-INTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
K K+W PLE+NP VM +Y++ LG P + DVL TE+WAL+MV PV LI L+PIK E R+EE AR+KA+GQ VSP+++FTKQTVGNACGTVG+LH +LN +DK F F +T +PD+RA LEED+ ++ AH GQS +VP +A + THF +E DG LYELDGRK FPINHG SSP T L+DA+ V + +A DP EL+F+M+A+ A
Sbjct: 7 KSHKKWLPLEANPDVMTEYIMKLGGPPV--QCVDVLTTEDWALDMVPKPVYGLILLFPIKDTTEKHREEEAARVKANGQTVSPKVYFTKQTVGNACGTVGILHTVLNIRDKQPLGAEGFFNKFLTKTMPLSPDQRAEALEEDDEIEEAHTEVEQQGQS-RVPTRDAQVETHFAALIEMDGCLYELDGRKEFPINHGPSSPGTFLKDAVRVAGQFMARDPGELRFSMIAVCKA 235
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|1173935403|gb|OQR86527.1| (ubiquitin carboxyl-terminal hydrolase [Achlya hypogyna]) HSP 1 Score: 239.58 bits (610), Expect = 9.566e-75 Identity = 127/230 (55.22%), Postives = 165/230 (71.74%), Query Frame = 0
Query: 100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALS 327
R KRWFPLESNP+VM +Y+ +GL + ++F DV TE+WAL+MV PVLA+I L+PIK E + + E RI+ +GQ VSP +++ KQTVGNACGTVG+LHAL N + + F GSFL+SF +T+DKTP E A ILEED+ L+ H AA +GQS Q+ +++ INTHFV DG+LYELDGRK FPINHG SS TLL+DA VVR + D E++FT+VAL+
Sbjct: 8 RVKRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAGEHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVRFTIVALA 237
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|953496377|emb|CEG41977.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3-like [Plasmopara halstedii]) HSP 1 Score: 236.884 bits (603), Expect = 6.685e-74 Identity = 117/220 (53.18%), Postives = 154/220 (70.00%), Query Frame = 0
Query: 100 RAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQV-PMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQE 318
+ KRWFPLESNP V+ Y +LG + + F DVL TEEWAL V PV+A+I L+PIKP E +EE ARI+ GQIVSP +++ +QTVGNACGTVG+LHA+ N + ++ GS+L++F T+ KTP E A LE+D+ L+ H AA GQS+Q+ +++ INTHFV F DG+LYELDGRK PINHG SSPET+LQDA V+++ +A D E
Sbjct: 7 KHKRWFPLESNPEVINSYAKNLGFPTSQFSFYDVLSTEEWALATVPTPVMAVIMLFPIKPHTEKADKEEAARIEKEGQIVSPNVYYMRQTVGNACGTVGILHAIGNVRHLVQLHPGSYLDNFFHETETKTPMEIAQYLEKDDELEKTHSSAAVAGQSEQLESVDDPINTHFVCFSCVDGHLYELDGRKKRPINHGPSSPETVLQDACQVIKKFMARDEGE 226 The following BLAST results are available for this feature:
BLAST of EWM23999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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