EWM23999.1, cds6640 (CDS) Nannochloropsis gaditana

Overview
NameEWM23999.1
Unique Namecds6640
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:191407..192417 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23999.1
Productubiquitin carboxyl-terminal hydrolase isozyme l3
Orig transcript idgnl|cribi|Naga_100040g4.1997.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:191407..192417 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR001578Peptidase_C12_UCH
Homology
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|585105286|gb|EWM23999.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana])

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query:    1 MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336
            MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE
Sbjct:    1 MTSTLSPVWQHLVSRKGVLDLHVLRCLQKTGHLHHIRMHGSCFLNKIFQIYLIMQLSLLYFIHWQVATAIMVPDKPVSPPPPPPPSRETTASEAAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|553184487|ref|XP_005854095.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana CCMP526] >gi|422294963|gb|EKU22262.1| ubiquitin carboxyl-terminal hydrolase isozyme l3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 462.611 bits (1189), Expect = 6.398e-163
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:  114 MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 336
            MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE
Sbjct:    1 MQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAAGGQEEE 223          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|698794468|ref|XP_009830263.1| (hypothetical protein H257_06651 [Aphanomyces astaci] >gi|574114852|gb|ETV80339.1| hypothetical protein H257_06651 [Aphanomyces astaci])

HSP 1 Score: 267.7 bits (683), Expect = 7.654e-86
Identity = 133/238 (55.88%), Postives = 171/238 (71.85%), Query Frame = 0
Query:   94 AAKPGKRAKRWFPLESNPSVMQKYVLSLGLIPTF-YKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
            AA    +AKRWFPLESNP VM +Y+  +G+     + F DV  T++WALEMV+ PVL ++ L+PIKPA E   ++E  RI+  GQIVS  +++ KQTVGNACGTVG+LHAL N +D L  R GSFL SF  +T  KTPDE A IL+ D+ ++  H  AA DGQS+Q+  +++ INTHFV F   DG+LYELDGRK FPINHG SSPETLL DA AV+R+ +A D  E++FT+VAL+ A
Sbjct:    2 AAATTTKAKRWFPLESNPQVMNEYIRRMGIAEDAEFAFCDVYSTDDWALEMVLRPVLGVVMLFPIKPATEDHAKQERERIEKDGQIVSKNVYYMKQTVGNACGTVGILHALGNARDYLPPRHGSFLSSFFSKTDGKTPDEIAAILQADDEIEETHASAAQDGQSEQLEHVDDPINTHFVCFSVVDGHLYELDGRKEFPINHGPSSPETLLGDACAVIRQFMARDEGEVRFTIVALAKA 239          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|673014232|ref|XP_008861077.1| (hypothetical protein H310_00181 [Aphanomyces invadans] >gi|574482675|gb|ETW09666.1| hypothetical protein H310_00181 [Aphanomyces invadans])

HSP 1 Score: 264.233 bits (674), Expect = 1.610e-84
Identity = 131/235 (55.74%), Postives = 173/235 (73.62%), Query Frame = 0
Query:   98 GKRAKRWFPLESNPSVMQKYVLSLGLIP--TFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
              +AKRWFPLESNP VM +Y+  +G IP    + F D+  T+EWALEMV+ PVL ++ L+PIKP +E+  +E+  RI+  GQIVSP ++F KQTVGNACGTVG+LHAL N KD L  R+GSFL SF  +T  KTPDE A IL++D+ ++  H  AA +GQS+Q+  +++ INTHFV F   DG+LYELDGRK FP+NHG SS ETLL+DA  V+R+ +A D  E++FT+VAL+ A
Sbjct:    4 ASKAKRWFPLESNPQVMNEYIRRMG-IPEDADFAFCDLYSTDEWALEMVLRPVLGVVMLFPIKPVSELHAKEQLERIEKEGQIVSPNVYFMKQTVGNACGTVGILHALGNAKDYLPPRDGSFLSSFFSKTVGKTPDEIAAILQDDDEIEETHASAAQEGQSEQLERVDDPINTHFVCFSVVDGHLYELDGRKKFPVNHGPSSQETLLEDACRVIRQFMARDEGEVRFTIVALAKA 237          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|669140606|ref|XP_008605871.1| (hypothetical protein SDRG_02084 [Saprolegnia diclina VS20] >gi|530742785|gb|EQC41027.1| hypothetical protein SDRG_02084 [Saprolegnia diclina VS20])

HSP 1 Score: 261.536 bits (667), Expect = 2.196e-83
Identity = 128/233 (54.94%), Postives = 172/233 (73.82%), Query Frame = 0
Query:  100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSAA 330
            +AKRWFPLESNP VM +Y   +GL   + ++F DV  TE+WAL+MV+ PVLA+I L+PIK   E + +EE  RI+  GQ+VSP +++ KQTVGNACGTVG+LHAL N  D + ++ GSFL++F E+T+ KTPDE AVILE D+ L+  H  AA +GQS+Q+  +++ INTHFV F   DG+LYELDGRK F INHG SS ETLL+DA  V++  +  D  E++FT+VAL+S +
Sbjct:    8 KAKRWFPLESNPQVMNEYAKRMGLPADSAFEFCDVYSTEDWALDMVLRPVLAVIMLFPIKTHTEAYAKEERQRIEVSGQVVSPNVYYMKQTVGNACGTVGILHALGNVGDYVAYQPGSFLQTFFEKTRTKTPDEIAVILEGDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFCTVDGHLYELDGRKAFAINHGPSSRETLLEDACRVIQSFMQRDAGEVRFTIVALASKS 240          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|813171600|ref|XP_012204555.1| (hypothetical protein SPRG_10207 [Saprolegnia parasitica CBS 223.65] >gi|641530557|gb|KDO24674.1| hypothetical protein SPRG_10207 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 257.684 bits (657), Expect = 9.807e-82
Identity = 127/229 (55.46%), Postives = 170/229 (74.24%), Query Frame = 0
Query:  100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVAL 326
            +AKRWFPLESNP VM +Y   +GL   + ++F DV  TE+WAL+MV+ PVLA+I L+PIK   E + +EE  RI+A GQ+VSP +++ KQTVGNACGTVG+LHAL N  D + ++ GSFL++F E+T+ KTP+E AVILE D+ L+  H  AA +GQS+Q+  +++ INTHFV F   D +LYELDGRK FPINHG SS ETLL+DA  V++  +  D  E++FT+VAL
Sbjct:    8 KAKRWFPLESNPQVMNEYAKRMGLPADSAFEFCDVYSTEDWALDMVLRPVLAVIMLFPIKTHTEAYAKEERQRIEASGQVVSPNVYYMKQTVGNACGTVGILHALGNVGDYVAYQPGSFLQTFFEKTRAKTPEEIAVILEGDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFCTVDDHLYELDGRKAFPINHGPSSRETLLEDACRVIQSFMQRDDGEVRFTIVAL 236          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|632947214|ref|XP_007888940.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 isoform X2 [Callorhinchus milii])

HSP 1 Score: 242.662 bits (618), Expect = 4.372e-76
Identity = 110/229 (48.03%), Postives = 164/229 (71.62%), Query Frame = 0
Query:  101 AKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
            ++RW PLESNP VM ++   LG++P+ ++F DV   +   L MV  PV +++ L+P+      FRQEE+++IK+ GQ VSP+++F KQT+ NACGTVGL+HAL NN+DKLEF   S ++ F +R+ D TP+E+A  LE+DE +   H  +A +GQ++   ++E ++ HF+ FV  DG+LYELDGRK FPINHG++S +T L+DA+ + ++ +  DP EL+FT+VALS A
Sbjct:    3 SQRWLPLESNPDVMNQFTRQLGVLPS-WQFGDVFGMDPELLSMVPRPVCSILLLFPVTEKYGTFRQEEESKIKSMGQEVSPQVYFMKQTISNACGTVGLIHALANNQDKLEFEANSAIKQFLDRSSDMTPEEKAKYLEKDESIRVTHESSAQEGQTETPSLDEKVDLHFITFVNIDGHLYELDGRKPFPINHGQTSTDTFLEDAVEICKKFMERDPGELRFTVVALSKA 230          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|873231253|emb|CEM08822.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 240.35 bits (612), Expect = 4.147e-75
Identity = 121/232 (52.16%), Postives = 157/232 (67.67%), Query Frame = 0
Query:   99 KRAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVPMEEA-INTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALSSA 329
            K  K+W PLE+NP VM +Y++ LG  P   +  DVL TE+WAL+MV  PV  LI L+PIK   E  R+EE AR+KA+GQ VSP+++FTKQTVGNACGTVG+LH +LN +DK       F   F  +T   +PD+RA  LEED+ ++ AH      GQS +VP  +A + THF   +E DG LYELDGRK FPINHG SSP T L+DA+ V  + +A DP EL+F+M+A+  A
Sbjct:    7 KSHKKWLPLEANPDVMTEYIMKLGGPPV--QCVDVLTTEDWALDMVPKPVYGLILLFPIKDTTEKHREEEAARVKANGQTVSPKVYFTKQTVGNACGTVGILHTVLNIRDKQPLGAEGFFNKFLTKTMPLSPDQRAEALEEDDEIEEAHTEVEQQGQS-RVPTRDAQVETHFAALIEMDGCLYELDGRKEFPINHGPSSPGTFLKDAVRVAGQFMARDPGELRFSMIAVCKA 235          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|1173935403|gb|OQR86527.1| (ubiquitin carboxyl-terminal hydrolase [Achlya hypogyna])

HSP 1 Score: 239.58 bits (610), Expect = 9.566e-75
Identity = 127/230 (55.22%), Postives = 165/230 (71.74%), Query Frame = 0
Query:  100 RAKRWFPLESNPSVMQKYVLSLGL-IPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQVP-MEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQELKFTMVALS 327
            R KRWFPLESNP+VM +Y+  +GL   + ++F DV  TE+WAL+MV  PVLA+I L+PIK   E + + E  RI+ +GQ VSP +++ KQTVGNACGTVG+LHAL N  + + F  GSFL+SF  +T+DKTP E A ILEED+ L+  H  AA +GQS Q+  +++ INTHFV     DG+LYELDGRK FPINHG SS  TLL+DA  VVR  +  D  E++FT+VAL+
Sbjct:    8 RVKRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAGEHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVRFTIVALA 237          
BLAST of EWM23999.1 vs. NCBI_GenBank
Match: gi|953496377|emb|CEG41977.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3-like [Plasmopara halstedii])

HSP 1 Score: 236.884 bits (603), Expect = 6.685e-74
Identity = 117/220 (53.18%), Postives = 154/220 (70.00%), Query Frame = 0
Query:  100 RAKRWFPLESNPSVMQKYVLSLGLIPTFYKFTDVLCTEEWALEMVVPPVLALIFLYPIKPANEIFRQEEDARIKAHGQIVSPRLFFTKQTVGNACGTVGLLHALLNNKDKLEFREGSFLESFAERTQDKTPDERAVILEEDEGLDAAHGCAAADGQSQQV-PMEEAINTHFVIFVEKDGYLYELDGRKNFPINHGKSSPETLLQDAMAVVRRVIAMDPQE 318
            + KRWFPLESNP V+  Y  +LG   + + F DVL TEEWAL  V  PV+A+I L+PIKP  E   +EE ARI+  GQIVSP +++ +QTVGNACGTVG+LHA+ N +  ++   GS+L++F   T+ KTP E A  LE+D+ L+  H  AA  GQS+Q+  +++ INTHFV F   DG+LYELDGRK  PINHG SSPET+LQDA  V+++ +A D  E
Sbjct:    7 KHKRWFPLESNPEVINSYAKNLGFPTSQFSFYDVLSTEEWALATVPTPVMAVIMLFPIKPHTEKADKEEAARIEKEGQIVSPNVYYMRQTVGNACGTVGILHAIGNVRHLVQLHPGSYLDNFFHETETKTPMEIAQYLEKDDELEKTHSSAAVAGQSEQLESVDDPINTHFVCFSCVDGHLYELDGRKKRPINHGPSSPETVLQDACQVIKKFMARDEGE 226          
The following BLAST results are available for this feature:
BLAST of EWM23999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105286|gb|EWM23999.1|0.000e+0100.00ubiquitin carboxyl-terminal hydrolase isozyme l3 [... [more]
gi|553184487|ref|XP_005854095.1|6.398e-163100.00ubiquitin carboxyl-terminal hydrolase isozyme l3 [... [more]
gi|698794468|ref|XP_009830263.1|7.654e-8655.88hypothetical protein H257_06651 [Aphanomyces astac... [more]
gi|673014232|ref|XP_008861077.1|1.610e-8455.74hypothetical protein H310_00181 [Aphanomyces invad... [more]
gi|669140606|ref|XP_008605871.1|2.196e-8354.94hypothetical protein SDRG_02084 [Saprolegnia dicli... [more]
gi|813171600|ref|XP_012204555.1|9.807e-8255.46hypothetical protein SPRG_10207 [Saprolegnia paras... [more]
gi|632947214|ref|XP_007888940.1|4.372e-7648.03PREDICTED: ubiquitin carboxyl-terminal hydrolase i... [more]
gi|873231253|emb|CEM08822.1|4.147e-7552.16unnamed protein product [Vitrella brassicaformis C... [more]
gi|1173935403|gb|OQR86527.1|9.566e-7555.22ubiquitin carboxyl-terminal hydrolase [Achlya hypo... [more]
gi|953496377|emb|CEG41977.1|6.685e-7453.18ubiquitin carboxyl-terminal hydrolase isozyme l3-l... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6656rna6656Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications