rna6648, rna6648 (mRNA) Nannochloropsis gaditana

Overview
Namerna6648
Unique Namerna6648
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1280
Alignment locationCM002469.1:169619..170595 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100280g10.2295.mrna
Orig protein idgnl|cribi|Naga_100280g10.2295
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:169619..170595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100280g10gene6426Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6648rna6648-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24046.1cds6632Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6648 ID=rna6648|Name=rna6648|organism=Nannochloropsis gaditana|type=mRNA|length=1280bp
ACAGCATTTAATCAGTCACATCTCACGCCAGGTCAGGGAGGAGAAGCATT
TGCGGCAAGCACCGTGAGGCCTGCGATGATGGTATCAAGCCGCGTCGACG
AAGAGGAGCGCTTGCTACCATCGGTGGTTGCTGTAGGACTCATGTCTACG
CCACATACGGTGGAGGACAAGGAGGAGGATGACGTGCCTGTCGAGGTCCG
GGAGCATGTAGGCGAGCTCGGTCGGCATTACAGAGCGCTGAGCAAACGCC
ACGTCTCATGTTTAAGCTTGCTGGCTGCGGCCCTCATATTTTTGGAAAAT
GACGACGTGAGTTTGCTCCTGAAGAAAGCCTGCCTTGCCCTTTTTATCAG
CTCATACGCCGACTACTTCATCAAGCCCTCGCCCCTTTTGGACGACGTGA
CGGTACGCCTGCACGTGGACGACCTTATACGGCCTGTCTCTGACAAGCTC
GTCTGGTCATCTTGCGTGTACGGTATCGCTGGCGTTTATTCCCTGTATTT
GGGACAATACGCCTTCGGGACCTTGCAAATCGTCACATGCGCCGGATCCA
GCCTCTATCATATTCGGAAGGAGGCTGTCTTTTTTAACTTTGACAACACC
TTTGCCTCTTCCCTTCTCTTCCTCACCCTGTATGCGGGGTGTATGGCGAT
CCATGTGCAGGACTGGACCCACTGCTTCGCCACCGTGGTCGGTCTCCCGA
TAGCCGTCTTTTTGATCGTCTTCTGTGGCATGCCCGCCTCTCTGGCCCGG
GAGCATAGACACGGCCCCGGGTTCCGGCAGTGCGCGGGCCGCCAGTACGA
TGATTGGCACACGGCCTGGCACTTTGTCTCCGGGGCAGGGACGGTGGTGA
CGGCGCATTTCTTCCAGAAGCATTGGCCGGGTCTTCAATGCGGGGGCTCC
AATTTCGGCGTCTTGCCCCACCTACCCGTGGTTCCAACGGCCTGCGTGGC
CTTTGCCTTGTCCTTGAACATCGTCGGGAACTGGGCGGGTGTCATGCCCG
TGTGCTAGGAGGGAGGGGGAGAGGGGGGGGAGGGAGGAAATGGCAGAGGA
GGACATGGAATGGGGAAGAAGAAAGGGTTTTCAGGGCCACCTTGTAGCTT
GTCTGCCCGGTAAAAGGGGGAGAGGGATGGGCGAGAAGAGGGGGAAAGGA
GGGGCAGTGTAACGTAGATAGTGTAGATATGCAAAATTTTGGAATCCAGG
ATCACTTTCATTTCTCTGCCAAGGAGCTCAGGCAGCACAAAGAATCGGAA
GCAGGGAAGATCAAACGATCTGAATTGTCC
back to top

protein sequence of rna6648

>rna6648-protein ID=rna6648-protein|Name=rna6648|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNLNLNKKP
LEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREGGKEG
GMEARLKREQIGGLMLQGGSGGEGRDRGEGRVRGEGEGEGKFSYRQAALQ
VSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWL
REPEEGRRGGLYIRRSRRLDLPKTLNGLDTTKERRKQYGSTSDNSDRLIF
PASDSLCCLSSLAEK
back to top

mRNA from alignment at CM002469.1:169619..170595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6648 ID=rna6648|Name=rna6648|organism=Nannochloropsis gaditana|type=mRNA|length=977bp|location=Sequence derived from alignment at CM002469.1:169619..170595- (Nannochloropsis gaditana)
ATGGAATTGGGCCTTCGGTTCCGACATTGGGGTCTGTCACCCGCGGAAGT
GCGCCTGGCGCTCTATGCGGCTTTGCTGCTGCCGTTAGCGAACCTTAGGT
ACCGGGAAAAGACGGGGAAAAAGTTGAATTTGAATTTAAACAAGAAGCCG
CTGGAAGTGAGTCGTTACGTGTTCGCCCGCATGCTGAAGATGAAGGCTAA
GGACGCGGACAAGTTGATTCTGCTCCATCAAGTCGTGGATGGCTTCGTCC
CTTTTCTGGAGGAAGGCAAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGG
GGAATGGAGGCGCGGTTGAAACGGGAGCAGATAGGAGGGTTGATGCTGCA
GGTTGGCCCCTTATGGCGAGCCGCCCTGCTGCTGGCGGCTGTCAAATGTA
GCATCAGGGAGGAGGAAGGAGGAACGAGGGCGCAGACCATGGGCAGTGCC
TCGTTTGTGAGGACAGGGGGGCTCGGGGGGGGAAGGACGGGATAGAGGGG
AGGGACGGGTCAGGGGGGAGGGGGAAGGGGAGGGGAAATTCTCCTACCGA
CAGGCGGCCTTGCAGGTATCCGACTACATCCAATCCGCGGGGCTGTCAGA
GATCTACCTACAAGCCCCTCCGCTGGATGGAGAAGGCTTGCGAAGGGTCC
TCCCTGGTATTCCCCACGGCCCGCCCTTTCGCCTTGTCATGGATGCGCAG
GTGGGCATCTGGCTGAGGGAGCCGGAGGTAGGGGGGGCAGAGATGGGAAG
CCGTCTGCGGGAAGCGTTTCCCGAGTATGGCTGAGGATCAGGAGGGGCGG
AGGGGGGGGCTGTACATAAGACGATCACGGCGTTTAGACTTACCAAAAAC
ACTGAATGGTCTCGACACCACAAAAGAAAGAAGAAAACAGTATGGATCTA
CCTCGGACAATTCAGATCGTTTGATCTTCCCTGCTTCCGATTCTTTGTGC
TGCCTGAGCTCCTTGGCAGAGAAATGA
back to top

Coding sequence (CDS) from alignment at CM002469.1:169619..170595-

>rna6648 ID=rna6648|Name=rna6648|organism=Nannochloropsis gaditana|type=CDS|length=2394bp|location=Sequence derived from alignment at CM002469.1:169619..170595- (Nannochloropsis gaditana)
GAGGGGCGGAGGGGGGGGCTGTACATAAGACGATCACGGCGTTTAGACTT
ACCAAAAACACTGAATGGTCTCGACACCACAAAAGAAAGAAGAAAACAGT
ATGGATCTACCTCGGACAATTCAGATCGTTTGATCTTCCCTGCTTCCGAT
TCTTTGTGCTGCCTGAGCTCCTTGGCAGAGAAATGAGGGGGCTCGGGGGG
GGAAGGACGGGATAGAGGGGAGGGACGGGTCAGGGGGGAGGGGGAAGGGG
AGGGGAAATTCTCCTACCGACAGGCGGCCTTGCAGGTATCCGACTACATC
CAATCCGCGGGGCTGTCAGAGATCTACCTACAAGCCCCTCCGCTGGATGG
AGAAGGCTTGCGAAGGGTCCTCCCTGGTATTCCCCACGGCCCGCCCTTTC
GCCTTGTCATGGATGCGCAGGTGGGCATCTGGCTGAGGGAGCCGGAGATG
GAATTGGGCCTTCGGTTCCGACATTGGGGTCTGTCACCCGCGGAAGTGCG
CCTGGCGCTCTATGCGGCTTTGCTGCTGCCGTTAGCGAACCTTAGGTACC
GGGAAAAGACGGGGAAAAAGTTGAATTTGAATTTAAACAAGAAGCCGCTG
GAAGTGAGTCGTTACGTGTTCGCCCGCATGCTGAAGATGAAGGCTAAGGA
CGCGGACAAGTTGATTCTGCTCCATCAAGTCGTGGATGGCTTCGTCCCTT
TTCTGGAGGAAGGCAAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGGGGA
ATGGAGGCGCGGTTGAAACGGGAGCAGATAGGAGGGTTGATGCTGCAGGA
GGGGCGGAGGGGGGGGCTGTACATAAGACGATCACGGCGTTTAGACTTAC
CAAAAACACTGAATGGTCTCGACACCACAAAAGAAAGAAGAAAACAGTAT
GGATCTACCTCGGACAATTCAGATCGTTTGATCTTCCCTGCTTCCGATTC
TTTGTGCTGCCTGAGCTCCTTGGCAGAGAAATGAGGGGGCTCGGGGGGGG
AAGGACGGGATAGAGGGGAGGGACGGGTCAGGGGGGAGGGGGAAGGGGAG
GGGAAATTCTCCTACCGACAGGCGGCCTTGCAGGTATCCGACTACATCCA
ATCCGCGGGGCTGTCAGAGATCTACCTACAAGCCCCTCCGCTGGATGGAG
AAGGCTTGCGAAGGGTCCTCCCTGGTATTCCCCACGGCCCGCCCTTTCGC
CTTGTCATGGATGCGCAGGTGGGCATCTGGCTGAGGGAGCCGGAGATGGA
ATTGGGCCTTCGGTTCCGACATTGGGGTCTGTCACCCGCGGAAGTGCGCC
TGGCGCTCTATGCGGCTTTGCTGCTGCCGTTAGCGAACCTTAGGTACCGG
GAAAAGACGGGGAAAAAGTTGAATTTGAATTTAAACAAGAAGCCGCTGGA
AGTGAGTCGTTACGTGTTCGCCCGCATGCTGAAGATGAAGGCTAAGGACG
CGGACAAGTTGATTCTGCTCCATCAAGTCGTGGATGGCTTCGTCCCTTTT
CTGGAGGAAGGCAAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGGGGAAT
GGAGGCGCGGTTGAAACGGGAGCAGATAGGAGGGTTGATGCTGCAGGAGG
GGCGGAGGGGGGGGCTGTACATAAGACGATCACGGCGTTTAGACTTACCA
AAAACACTGAATGGTCTCGACACCACAAAAGAAAGAAGAAAACAGTATGG
ATCTACCTCGGACAATTCAGATCGTTTGATCTTCCCTGCTTCCGATTCTT
TGTGCTGCCTGAGCTCCTTGGCAGAGAAATGAGGGGGCTCGGGGGGGGAA
GGACGGGATAGAGGGGAGGGACGGGTCAGGGGGGAGGGGGAAGGGGAGGG
GAAATTCTCCTACCGACAGGCGGCCTTGCAGGTATCCGACTACATCCAAT
CCGCGGGGCTGTCAGAGATCTACCTACAAGCCCCTCCGCTGGATGGAGAA
GGCTTGCGAAGGGTCCTCCCTGGTATTCCCCACGGCCCGCCCTTTCGCCT
TGTCATGGATGCGCAGGTGGGCATCTGGCTGAGGGAGCCGGAGATGGAAT
TGGGCCTTCGGTTCCGACATTGGGGTCTGTCACCCGCGGAAGTGCGCCTG
GCGCTCTATGCGGCTTTGCTGCTGCCGTTAGCGAACCTTAGGTACCGGGA
AAAGACGGGGAAAAAGTTGAATTTGAATTTAAACAAGAAGCCGCTGGAAG
TGAGTCGTTACGTGTTCGCCCGCATGCTGAAGATGAAGGCTAAGGACGCG
GACAAGTTGATTCTGCTCCATCAAGTCGTGGATGGCTTCGTCCCTTTTCT
GGAGGAAGGCAAGAAGGGAAGGAGGGAAGGAGGGAAGGAGGGGGGAATGG
AGGCGCGGTTGAAACGGGAGCAGATAGGAGGGTTGATGCTGCAG
back to top
Synonyms
Publications