EWM24046.1, cds6632 (CDS) Nannochloropsis gaditana

Overview
NameEWM24046.1
Unique Namecds6632
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:170245..170595 -
Alignment locationCM002469.1:169869..170129 -
Alignment locationCM002469.1:169619..169804 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24046.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100280g10.2295.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:170245..170595 -
CM002469.1supercontigCM002469.1:169869..170129 -
CM002469.1supercontigCM002469.1:169619..169804 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24046.1 vs. NCBI_GenBank
Match: gi|585105337|gb|EWM24046.1| (hypothetical protein Naga_100280g10 [Nannochloropsis gaditana])

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0 
Query:    1 MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNLNLNKKPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREGGKEGGMEARLKREQIGGLMLQGGSGGEGRDRGEGRVRGEGEGEGKFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPEEGRRGGLYIRRSRRLDLPKTLNGLDTTKERRKQYGSTSDNSDRLIFPASDSLCCLSSLAEK 265
            MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNLNLNKKPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREGGKEGGMEARLKREQIGGLMLQGGSGGEGRDRGEGRVRGEGEGEGKFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPEEGRRGGLYIRRSRRLDLPKTLNGLDTTKERRKQYGSTSDNSDRLIFPASDSLCCLSSLAEK
Sbjct:    1 MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNLNLNKKPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREGGKEGGMEARLKREQIGGLMLQGGSGGEGRDRGEGRVRGEGEGEGKFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPEEGRRGGLYIRRSRRLDLPKTLNGLDTTKERRKQYGSTSDNSDRLIFPASDSLCCLSSLAEK 265
[Close]
BLAST of EWM24046.1 vs. NCBI_GenBank
Match: gi|298712997|emb|CBJ26899.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 62.7734 bits (151), Expect = 1.556e-7
Identity = 58/208 (27.88%), Postives = 95/208 (45.67%), Query Frame = 0 
Query:   18 RLALYAALLLPLANLRYREKTGKKLNLNLNKKPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKG--RREGGKEGG---MEARLKREQIGGL----MLQGGSGGEGRDRG-EGRVRGEGEGEGKFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPEEGRRGGL-YIR 214
            RL LYAA LLPLA+          +  N  +  + + + + A  LK++AKD  +++ L      F   L +  +G   R   K      +   L    +G L    ++ G +G  G     +  VR  G+ E   +   A + ++  I+S GL  ++   P  +G  ++++LP IP GP F  VMD Q+   +  PE  +  GL YI+
Sbjct:  514 RLGLYAAFLLPLAD---------SMCPNQKRANVPLIQVMMADYLKLRAKDPQRVLQLQSAAMDFQLLLRKTARGPLTRANSKPITFPRLAPGLTMRAVGPLWRVALVLGLTGDLGTKHILDSNVRDRGDKEEDAAVIAAYMSMAREIESMGLEGVWDLKPMFNGGEVKKILPEIPRGPVFSKVMDDQIKWMIANPEGTKEEGLEYIK 712
The following BLAST results are available for this feature:
BLAST of EWM24046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105337|gb|EWM24046.1|0.000e+0100.00hypothetical protein Naga_100280g10 [Nannochlorops... [more]
gi|298712997|emb|CBJ26899.1|1.556e-727.88conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6648rna6648Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications