rna6643, rna6643 (mRNA) Nannochloropsis gaditana

Overview
Namerna6643
Unique Namerna6643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length468
Alignment locationCM002469.1:158193..159736 -

Link to JBrowse

Properties
Property NameValue
ProductConcanavalin A-like lectin/glucanase, subgroup
Orig transcript idgnl|cribi|Naga_100280g5.2296.mrna
Orig protein idgnl|cribi|Naga_100280g5.2296
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:158193..159736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100280g5gene6421Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24047.1cds6627Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6643rna6643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6643 ID=rna6643|Name=rna6643|organism=Nannochloropsis gaditana|type=mRNA|length=468bp
ATGGGAAATGCGAAGGCGTATAAGAGCAAAGAGACTAAACTACATGGGAT
GCCACAACGTTGGGTAGGAGTGAGACGGGCTGCTCATGACACGGGCCGGG
ATGGTGCCTGCTACGGGATTGGAGATGGGGAGTGCAAGGCAGAATGGGAC
AACATAGATTGTTTGCATATCGAATTTATTGCTTGGTGTACACAGTTATT
TCGTGGTTTTATTGGAAAAACGAGTCGAGCGAACGACATCTTAGTTAAAG
TCAAGGCGATGGCCCTTCCCGAGCTGATGTTCGTCGGCGGATTGCGCACA
ATCCCCGGGGTTCCTTACCTGTCGCTGTCGCTGTTTCTACTATCGTTGCA
GGTCCCACGGTCAATGCACACGGCAAAAATGTGTGTACGAGGGGCTTTGA
CAGACCGCAGTCGAAGGGATCAAGTGAAAAGTAAAACACAACGTCACGAG
ACGACAGTCACTGTTTGA
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protein sequence of rna6643

>rna6643-protein ID=rna6643-protein|Name=rna6643|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
MSELSDNDVFRCHPSLSIKSIAWLCFVLIARSASIEQENVLCPSLRSGPT
LYSSSDIFSTDFTEQNQVQSFLSENYGRVNTDGVLACRRSDHLLYNTSMS
GAGLETDVRGLRIVMDNNGGAVCDHNSEIATGHLLTRFYLQEGRIDLTAR
MGYGPDAAPRYHSEDSFSCLGLYVHQSVSQHGYRNEISMCVSSKDPSTVR
MGVWNGSPADQEEARQAKTSMDLSQAFHTYSIEWTASRVRFWLDDLKLWD
MPGQRFCAGVHAAKIDAGMSQGRRLPYEPMSVRIILRPLGIRYKATTYMD
ATKFSYFPLVQAEEESEPVFHVSAGTSLTTEGLGKARGLGNLWQLLSMCV
IIVYFI
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mRNA from alignment at CM002469.1:158193..159736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6643 ID=rna6643|Name=rna6643|organism=Nannochloropsis gaditana|type=mRNA|length=1544bp|location=Sequence derived from alignment at CM002469.1:158193..159736- (Nannochloropsis gaditana)
CGACAAACTCCCTTCCGCCGAGAAGGAAAAAAATCCCGCCCCATTGCTAA
ACCCAAACTAATTATATTATTTCTTACATTGATCAGGTTGGAAATCGAGT
TTCTCACGGACTTGTTTAACAGCGTCCCTGTTGACAAGGGTTAAGATAAG
CCCTTCGGCCCATATCGAGCTCCTCGCACTCCAAGGAAGTCGGCCTACCA
CCTCCCTTGCCGCCTCAATCGAGCAACTTAGACGTAGCCTTGTAGCTTTC
ATGTCAGAGCTATCTGATAATGATGTGTTTCGATGTCATCCCTCCTTGTC
AATCAAATCTATCGCATGGCTTTGCTTTGTATTGATTGCTCGCAGTGCTT
CCATTGAGCAAGAAAATGTCCTGTGTCCAAGTCTTCGCTCGGGGCCGACT
CTGTACTCTTCATCTGACATTTTTTCGACGGACTTCACAGAGCAAAATCA
AGTTCAATCGTTTTTGAGCGAAAATTATGGCCGCGTGAACACTGATGGGG
TCTTGGCCTGCCGACGCTCCGATCACTTGCTCTACAATACATCGATGAGC
GGCGCAGGTTTGGAGACCGATGTGCGAGGTTTACGCATTGTAATGGACAA
CAACGGGGGGGCAGTATGCGATCATAATTCAGAGATAGCTACGGGCCACC
TGTTAACCAGATTTTACCTGCAAGAAGGGCGGATCGACCTGACAGCACGT
ATGGGATACGGGCCTGACGCCGCTCCAAGATATCATAGCGAAGACAGTTT
CTCATGCTTAGGTTTGTATGTGCATCAATCTGTATCCCAACATGGCTATC
GAAACGAAATCTCGATGTGCGTGAGTTCCAAAGACCCAAGCACTGTTCGC
ATGGGGGTGTGGAATGGATCCCCTGCCGATCAAGAGGAGGCCAGGCAGGC
CAAGACGTCCATGGATTTGTCCCAAGCCTTCCACACCTACAGCATCGAGT
GGACTGCGAGCCGCGTGCGTTTTTGGCTCGACGACTTGAAGCTCTGGGAC
ATGCCGGGGCAACGATTTTGTGCGGGTGTACACGCGGCGAAAATCGACGC
CGGGATGAGCCAAGGGCGGCGGCTACCTTACGAGCCCATGTCTGTACGGA
TTATTTTAAGGCCGTTGGGGATCAGATACAAAGCAACGACATACATGGAT
GCCACAAAATTTTCCTACTTCCCCCTGGTCCAGGCAGAGGAGGAGTCAGA
GCCGGTGTTCCACGTGTCGGCTGGGACCTCTTTGACAACGGAAGGGTTGG
GGAAGGCGCGGGGCCTGGGAAATTTGTGGCAGCTCCTCAGCATGTGTGTA
ATTATTGTGTATTTCATTTGAAAGCATTGGCCGATGTACACGGGCACGGC
CTTTGTAAATTATTGGACGCGGGTGCCGCTGCTCGTGAGGTTCGCTTGCA
TGATTCATTAAGCTCATATATTTTCACGGGAATACCAGGCGACGACATCA
AAGAAAAATAATAGGGCATGGTATCTGCATTCAGGCATGCACAGAACAGT
ACGACTTCCAGAAGGCAACATGTACCCTAACAGCATCGCTTTCA
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Coding sequence (CDS) from alignment at CM002469.1:158193..159736-

>rna6643 ID=rna6643|Name=rna6643|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002469.1:158193..159736- (Nannochloropsis gaditana)
ATGTCAGAGCTATCTGATAATGATGTGTTTCGATGTCATCCCTCCTTGTC
AATCAAATCTATCGCATGGCTTTGCTTTGTATTGATTGCTCGCAGTGCTT
CCATTGAGCAAGAAAATGTCCTGTGTCCAAGTCTTCGCTCGGGGCCGACT
CTGTACTCTTCATCTGACATTTTTTCGACGGACTTCACAGAGCAAAATCA
AGTTCAATCGTTTTTGAGCGAAAATTATGGCCGCGTGAACACTGATGGGG
TCTTGGCCTGCCGACGCTCCGATCACTTGCTCTACAATACATCGATGAGC
GGCGCAGGTTTGGAGACCGATGTGCGAGGTTTACGCATTGTAATGGACAA
CAACGGGGGGGCAGTATGCGATCATAATTCAGAGATAGCTACGGGCCACC
TGTTAACCAGATTTTACCTGCAAGAAGGGCGGATCGACCTGACAGCACGT
ATGGGATACGGGCCTGACGCCGCTCCAAGATATCATAGCGAAGACAGTTT
CTCATGCTTAGGTTTGTATGTGCATCAATCTGTATCCCAACATGGCTATC
GAAACGAAATCTCGATGTGCGTGAGTTCCAAAGACCCAAGCACTGTTCGC
ATGGGGGTGTGGAATGGATCCCCTGCCGATCAAGAGGAGGCCAGGCAGGC
CAAGACGTCCATGGATTTGTCCCAAGCCTTCCACACCTACAGCATCGAGT
GGACTGCGAGCCGCGTGCGTTTTTGGCTCGACGACTTGAAGCTCTGGGAC
ATGCCGGGGCAACGATTTTGTGCGGGTGTACACGCGGCGAAAATCGACGC
CGGGATGAGCCAAGGGCGGCGGCTACCTTACGAGCCCATGTCTGTACGGA
TTATTTTAAGGCCGTTGGGGATCAGATACAAAGCAACGACATACATGGAT
GCCACAAAATTTTCCTACTTCCCCCTGGTCCAGGCAGAGGAGGAGTCAGA
GCCGGTGTTCCACGTGTCGGCTGGGACCTCTTTGACAACGGAAGGGTTGG
GGAAGGCGCGGGGCCTGGGAAATTTGTGGCAGCTCCTCAGCATGTGTGTA
ATTATTGTGTATTTCATTTGA
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Synonyms
Publications