rna6642, rna6642 (mRNA) Nannochloropsis gaditana

Overview
Namerna6642
Unique Namerna6642
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1455
Alignment locationCM002469.1:157671..158195 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100280g4.2298.mrna
Orig protein idgnl|cribi|Naga_100280g4.2298
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:157671..158195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100280g4gene6420Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6642rna6642-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24049.1cds6626Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6642 ID=rna6642|Name=rna6642|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
ATGTCATCAATGATGATGGACCTGGACGACGACGACGGTCCGCTAAAAAT
GGAAGATGGGGGAGGAAGTGGCGGTAGCCCAGGCGGTAGTGACGACTATA
TTCTGCCCCGTCCACCTTCCCCAGGAGGATTGCAACGTACATTCACGCCT
GTCGATGACTACGAAACCACCTGTTCACCATTGCCGCCCCTGCCCCCCTC
TTCATCTTCCACATCCAGCGATTACAAGAGAAATGGACGTGCTAATTGCG
ATTTTCACCTATCACGGCCCATCGCCTCCCCTTTCTCTGGTCATAATTCG
CAGCACCAGCCCTACTCCGCACCGATGGGACCTCCCCAGGCGCATCTACG
GGAGAATATTAACCGAGATCTCCAACGTGGCTATGCTATGCAAGATGAAC
TTGGGAAAAACTATTTCTTGGATGAGAGCCCGTCTGATGTAATGGCTTTC
CCTCCTCCCACTCCATACAAACCCGCCCATCCGGGCTATGCCCCGGCTTC
TGCCACCAGGACGCCTTCCTCTCTCCACCGACATCCCCACGAACCGCATT
CCCACCATCACCCCACGCACTCCTCCAAACGGAACGGCCGCGGCAGCAAC
CCCTGTAGCACCGACAAGCACCGAGGCAGCGGGGCCGGGCCAGGAAGCAG
CGGCCGGCGGACTTCCCTCCATCAGGGTCATGGGCCGACCACGCCGGTGT
CGCGTTTCCAAACGGACTTTGACGTTGTCCGCGTCATAGGCTCGGGCTGT
TTCGGGGAGGTCTACCGTGTCCGAAGCCGGGTGGACGGGGTGGAATATGC
GGTCAAGTGCACCCGTCGCCGTTTCCGGGGGCCCGCAGACCGAAACCGTT
ACCTGCAAGAGGTGAAGGCGTTGGCGAAAGTGTGCGCTGCGGACAGCAGC
GAGGAAGTCTTGCATGTTGTTCGGTACCACCAGGCTTGGATCGAGGACGA
GCGTCTCTTCATGCAGACAGAGTTGTGCGAGGAGAGCTTGGACGGGGCGC
TTCGAGCCGGGGAGAAGATGGGCTTCGAAGAGGTGTTTGATTTCATGCGA
CAGATGCTCCTGGCTTTGGACGTGTTGCACCGACATGGCCTCGTACACTT
GGACGTGAAGCCTGGCAACATCTTTATCAAGGCGGGTGTGTATAAGCTGG
GGGACTTCGGCCTGGTCGCCTCCGTCAACAGCAGCGACGGTCTGGGCGAC
AGCTTGGTTGAAGGCGACTCCCGCTACATGTCCGCCGAGCTCCTCCAGGA
CGGACCGAAGGACCTGACGAAATGCGACATCTTCTCCCTGGGGGCGACCG
TCTACGAAATGGGCCGGGGCCGGGCTCTGCCACCGAACGGGGAGGAGTGG
CACGCCTTGCGGTCTGGGCATCCCCCTTCTTTAAAAGGAGAACCGGCGGT
TCTGGTCTCTGATTTGATGCGGGTCCTCGCCCAGATGATGGCGGTAGGCA
GCTGA
back to top

protein sequence of rna6642

>rna6642-protein ID=rna6642-protein|Name=rna6642|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MGNAKAYKSKETKLHGMPQRWVGVRRAAHDTGRDGACYGIGDGECKAEWD
NIDCLHIEFIAWCTQLFRGFIGKTSRANDILVKVKAMALPELMFVGGLRT
IPGVPYLSLSLFLLSLQVPRSMHTAKMCVRGALTDRSRRDQVKSKTQRHE
TTVTV
back to top

mRNA from alignment at CM002469.1:157671..158195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6642 ID=rna6642|Name=rna6642|organism=Nannochloropsis gaditana|type=mRNA|length=525bp|location=Sequence derived from alignment at CM002469.1:157671..158195+ (Nannochloropsis gaditana)
ATGGGAAATGCGAAGGCGTATAAGAGCAAAGAGACTAAACTACATGGGAT
GCCACAACGTTGGGTAGGAGTGAGACGGGCTGCTCATGACACGGGCCGGG
ATGGTGCCTGCTACGGGATTGGAGATGGGGAGTGCAAGGCAGAATGGGAC
AAGTCTTCTCGATGACGTACTGACCGTTGCACATGCCCCCAAATTTACGC
AGCTTCTAGCATAGATTGTTTGCATATCGAATTTATTGCTTGGTGTACAC
AGTTATTTCGTGGTTTTATTGGAAAAACGAGTCGAGCGAACGACATCTTA
GTTAAAGTCAAGGCGATGGCCCTTCCCGAGCTGATGTTCGTCGGCGGATT
GCGCACAATCCCCGGGGTTCCTTACCTGTCGCTGTCGCTGTTTCTACTAT
CGTTGCAGGTCCCACGGTCAATGCACACGGCAAAAATGTGTGTACGAGGG
GCTTTGACAGACCGCAGTCGAAGGGATCAAGTGAAAAGTAAAACACAACG
TCACGAGACGACAGTCACTGTTTGA
back to top

Coding sequence (CDS) from alignment at CM002469.1:157671..158195+

>rna6642 ID=rna6642|Name=rna6642|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at CM002469.1:157671..158195+ (Nannochloropsis gaditana)
ATGGGAAATGCGAAGGCGTATAAGAGCAAAGAGACTAAACTACATGGGAT
GCCACAACGTTGGGTAGGAGTGAGACGGGCTGCTCATGACACGGGCCGGG
ATGGTGCCTGCTACGGGATTGGAGATGGGGAGTGCAAGGCAGAATGGGAC
AACATAGATTGTTTGCATATCGAATTTATTGCTTGGTGTACACAGTTATT
TCGTGGTTTTATTGGAAAAACGAGTCGAGCGAACGACATCTTAGTTAAAG
TCAAGGCGATGGCCCTTCCCGAGCTGATGTTCGTCGGCGGATTGCGCACA
ATCCCCGGGGTTCCTTACCTGTCGCTGTCGCTGTTTCTACTATCGTTGCA
GGTCCCACGGTCAATGCACACGGCAAAAATGTGTGTACGAGGGGCTTTGA
CAGACCGCAGTCGAAGGGATCAAGTGAAAAGTAAAACACAACGTCACGAG
ACGACAGTCACTGTTTGAATGGGAAATGCGAAGGCGTATAAGAGCAAAGA
GACTAAACTACATGGGATGCCACAACGTTGGGTAGGAGTGAGACGGGCTG
CTCATGACACGGGCCGGGATGGTGCCTGCTACGGGATTGGAGATGGGGAG
TGCAAGGCAGAATGGGACAACATAGATTGTTTGCATATCGAATTTATTGC
TTGGTGTACACAGTTATTTCGTGGTTTTATTGGAAAAACGAGTCGAGCGA
ACGACATCTTAGTTAAAGTCAAGGCGATGGCCCTTCCCGAGCTGATGTTC
GTCGGCGGATTGCGCACAATCCCCGGGGTTCCTTACCTGTCGCTGTCGCT
GTTTCTACTATCGTTGCAGGTCCCACGGTCAATGCACACGGCAAAAATGT
GTGTACGAGGGGCTTTGACAGACCGCAGTCGAAGGGATCAAGTGAAAAGT
AAAACACAACGTCACGAGACGACAGTCACTGTTTGA
back to top
Synonyms
Publications