rna664, rna664 (mRNA) Nannochloropsis gaditana

Overview
Namerna664
Unique Namerna664
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length581
Alignment locationCM002456.1:107357..107613 -

Link to JBrowse

Properties
Property NameValue
Productpp-loop domain protein
Orig transcript idgnl|cribi|Naga_104720g1.7595.mrna
Orig protein idgnl|cribi|Naga_104720g1.7595
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:107357..107613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_104720g1gene637Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30009.1cds664Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna664rna664-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna664 ID=rna664|Name=rna664|organism=Nannochloropsis gaditana|type=mRNA|length=581bp
ATGTCGTCACGAATTTCGCCTTACCCCTCCTGCTTTGCCACCCTACCCCC
CTCCCCTCTCCAGATGTTCATCGCTCCTTCCACTTACGCCTCCACTTACT
TCGAGCTCTGTTCCTTGATGCCTTCGGACGCCGAAATTCGGCGACAGCTG
CACCGGATGATCGAGTTGGCAGGTGCCACTGTCCGTGTGACAGTCCTAAG
GAAGGAAGGAGGGGAGGGAGGGAGGGAGAGAGGCGGAGGTGGAGGCGGAG
GAGTTGGAGGGGGAGGAAATGGAGGGAAAGGGTGCCATCATCATCATACG
GCAGAAGTGTTGGATGATGGGGAAGGAAGGAGGAACCCGATGATGTTTAT
GGAGCGCCTGCATGCGTAAGGAGGTGAAAAAAGGGAGGGAGTGGAGGAAA
GAAGGAGTTCTTTCTGCCTATCCTCAGTGTCAACGACACGTACAAGGGTA
CCTGCCGGGAAATGACACATAAATATCAATTGAAGGGTCCCAGATGACGT
GGCCAGCCACCCATGGCGTGGGCAGGAAGGCACTGTCGGGAGGATCGCTG
AACCAGTGGCGAGGTCGGTGGCGGCACACAG
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protein sequence of rna664

>rna664-protein ID=rna664-protein|Name=rna664|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQVGGRAGGRAG
GREKGGRNSKGRRGRSTSMAL
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mRNA from alignment at CM002456.1:107357..107613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna664 ID=rna664|Name=rna664|organism=Nannochloropsis gaditana|type=mRNA|length=257bp|location=Sequence derived from alignment at CM002456.1:107357..107613- (Nannochloropsis gaditana)
CCCAGCTCCAAGGCGACTCCCTCTGCTCCTTCTGCAGCCGCATGAAGCGC
GGACTGCTCTATACATGCTGCGTGGAAAACGGGTACAACAAGTTGCTCTT
GGCGCAGCACCTTGATGACCTGGTGGAATCCCTCTTTATGTCGCTCATGC
ACAACGGCCAGGTGGGGGGGAGGGCGGGAGGGAGGGCGGGAGGGCGGGAG
AAGGGAGGGAGGAATTCCAAAGGAAGAAGAGGGAGGAGCACAAGCATGGC
ACTGTGA
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Coding sequence (CDS) from alignment at CM002456.1:107357..107613-

>rna664 ID=rna664|Name=rna664|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002456.1:107357..107613- (Nannochloropsis gaditana)
ATGAAGCGCGGACTGCTCTATACATGCTGCGTGGAAAACGGGTACAACAA
GTTGCTCTTGGCGCAGCACCTTGATGACCTGGTGGAATCCCTCTTTATGT
CGCTCATGCACAACGGCCAGGTGGGGGGGAGGGCGGGAGGGAGGGCGGGA
GGGCGGGAGAAGGGAGGGAGGAATTCCAAAGGAAGAAGAGGGAGGAGCAC
AAGCATGGCACTGTGA
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Synonyms
Publications