EWM30009.1, cds664 (CDS) Nannochloropsis gaditana

Overview
NameEWM30009.1
Unique Namecds664
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:107357..107572 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30009.1
Productpp-loop domain protein
Orig transcript idgnl|cribi|Naga_104720g1.7595.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:107357..107572 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011063tRNA-lysidine/thiocyt_synth
Homology
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|585112627|gb|EWM30009.1| (pp-loop domain protein [Nannochloropsis gaditana])

HSP 1 Score: 141.739 bits (356), Expect = 8.858e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQVGGRAGGRAGGREKGGRNSKGRRGRSTSMAL 71
            MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQVGGRAGGRAGGREKGGRNSKGRRGRSTSMAL
Sbjct:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQVGGRAGGRAGGREKGGRNSKGRRGRSTSMAL 71          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|1173954103|gb|OQS01596.1| (hypothetical protein ACHHYP_00577 [Achlya hypogyna])

HSP 1 Score: 79.337 bits (194), Expect = 1.112e-15
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLYTCC +NGYNKL+LAQHLDDL ES FMS M+NGQV
Sbjct:  800 MKRGLLYTCCRKNGYNKLVLAQHLDDLAESFFMSAMYNGQV 840          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|813185857|ref|XP_012207100.1| (hypothetical protein SPRG_12658 [Saprolegnia parasitica CBS 223.65] >gi|641527901|gb|KDO22160.1| hypothetical protein SPRG_12658 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.337 bits (194), Expect = 1.112e-15
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLYTCC +NGYNKL+LAQHLDDL ES FMS M+NGQV
Sbjct:  798 MKRGLLYTCCRKNGYNKLVLAQHLDDLAESFFMSAMYNGQV 838          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|669158542|ref|XP_008614833.1| (hypothetical protein SDRG_10614 [Saprolegnia diclina VS20] >gi|530733584|gb|EQC31826.1| hypothetical protein SDRG_10614 [Saprolegnia diclina VS20])

HSP 1 Score: 77.7962 bits (190), Expect = 3.989e-15
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLYTCC +NGYNKL+L QHLDDL ES FMS M+NGQV
Sbjct:  815 MKRGLLYTCCRKNGYNKLVLGQHLDDLAESFFMSAMYNGQV 855          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|298708709|emb|CBJ49206.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.485 bits (184), Expect = 2.733e-14
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLY CC E GYNKL+LAQHLDDL ES  MS +HNGQV
Sbjct:  979 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQV 1019          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|953500112|emb|CEG38753.1| (hypothetical protein L914_16740 [Plasmopara halstedii])

HSP 1 Score: 75.0998 bits (183), Expect = 3.944e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLYTCC   G+NKL+LAQHLDDL ES FMS MHNGQ+
Sbjct:  848 MKRGLLYTCCRNFGFNKLVLAQHLDDLAESFFMSAMHNGQL 888          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|298706813|emb|CBJ34231.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 7.701e-14
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQ 40
            MKRGLLY CC E GYNKL+LAQHLDDL ES  MS +HNGQ
Sbjct:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 40          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|695408750|ref|XP_009524736.1| (hypothetical protein PHYSODRAFT_557789 [Phytophthora sojae] >gi|348682203|gb|EGZ22019.1| hypothetical protein PHYSODRAFT_557789 [Phytophthora sojae])

HSP 1 Score: 73.9442 bits (180), Expect = 9.870e-14
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRG+LYTCC + G+NKL+LAQHLDDL ES FMS MHNGQ+
Sbjct:  877 MKRGVLYTCCRKYGFNKLVLAQHLDDLAESFFMSAMHNGQL 917          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|1173945389|gb|OQR94019.1| (cysteine desulfurase [Thraustotheca clavata])

HSP 1 Score: 73.559 bits (179), Expect = 1.233e-13
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRGLLYTCC  N YNKL+LAQHLDDL ES  MS M+NGQV
Sbjct:  814 MKRGLLYTCCRTNNYNKLVLAQHLDDLAESFIMSAMYNGQV 854          
BLAST of EWM30009.1 vs. NCBI_GenBank
Match: gi|1214682733|gb|OWZ00908.1| (hypothetical protein PHMEG_00027801 [Phytophthora megakarya])

HSP 1 Score: 73.1738 bits (178), Expect = 1.896e-13
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQV 41
            MKRG+LY+CC + G+NKL+LAQHLDDL ES FMS MHNGQ+
Sbjct:  862 MKRGVLYSCCRKYGFNKLVLAQHLDDLAESFFMSAMHNGQL 902          
The following BLAST results are available for this feature:
BLAST of EWM30009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112627|gb|EWM30009.1|8.858e-43100.00pp-loop domain protein [Nannochloropsis gaditana][more]
gi|1173954103|gb|OQS01596.1|1.112e-1582.93hypothetical protein ACHHYP_00577 [Achlya hypogyna... [more]
gi|813185857|ref|XP_012207100.1|1.112e-1582.93hypothetical protein SPRG_12658 [Saprolegnia paras... [more]
gi|669158542|ref|XP_008614833.1|3.989e-1580.49hypothetical protein SDRG_10614 [Saprolegnia dicli... [more]
gi|298708709|emb|CBJ49206.1|2.733e-1478.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|953500112|emb|CEG38753.1|3.944e-1478.05hypothetical protein L914_16740 [Plasmopara halste... [more]
gi|298706813|emb|CBJ34231.1|7.701e-1477.50conserved unknown protein [Ectocarpus siliculosus][more]
gi|695408750|ref|XP_009524736.1|9.870e-1475.61hypothetical protein PHYSODRAFT_557789 [Phytophtho... [more]
gi|1173945389|gb|OQR94019.1|1.233e-1378.05cysteine desulfurase [Thraustotheca clavata][more]
gi|1214682733|gb|OWZ00908.1|1.896e-1373.17hypothetical protein PHMEG_00027801 [Phytophthora ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna664rna664Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications