rna6636, rna6636 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6636
Unique Name	rna6636
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1969
Alignment location	CM002469.1:138714..141130 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100063g24.3884.mrna
Orig protein id	gnl\|cribi\|Naga_100063g24.3884
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:138714..141130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g24	gene6414	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6636	rna6636-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24059.1	cds6620	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:138714..141130-
coding sequence from alignment at CM002469.1:138714..141130-

mRNA sequence

>rna6636 ID=rna6636|Name=rna6636|organism=Nannochloropsis gaditana|type=mRNA|length=1969bp
ATGGGCAATCCCTATCGCTATCCGACAACCTGACTTAAGAGGTCGGAGCT
GGGTGTGGACACATTATTCATTAATTGGTGACAAAATTGGCGGCGACGGC
AGCGAGGAGGGAGTACCCGGCGCCTTGAGTCTGATAACTTGCTGCAGACA
GGCGATCGCAGATTTCAAAATGAAATTCAGGACTTGTCACGCGTAGAGAT
TCCAAACGAAGTGTCTAAAAGTGCTCCTGGGTATTTTGTCATTGTCGTCA
TGATGCGAATCGTGGTGGTAGCATTTAGGGAACACAGCTCTAACCCCCCA
AATGACAGCCCTATCAATTTTCATGACGAGAATCAAGCTGGTGCGAATGC
CGTTCTCATCGATAAGACTTTTCATCCTTAAATCATACAGGATGGTATGA
CAGTCATCGTAATTCATTCCCATTGGTTTTAAGACTTCCTGGAATCTCAT
CGATTTCTCTCAGATAACGCGCCAGTATGCTCCCGCGTGCCGTCACCGGG
CTGTTGGCCGTGCTCCTGTCTCTCCCCGCCGCTTCATTCCTTCAACTCCC
TCTCCGCCCCCGTATCGTTCGTCGTCATTTTGACTCGGCTGCTGCGCCCC
CCAATGTCCTCGAGATTCCTCCTGCTTCCGACCAGGCCTGTCGCCCGATC
CTTCGCCGCTTCACCCGTCGAGTCACCTTCCGCGCATGGCACCTCATTTG
GCGGCACCGCTTTCCTTTCTTCCTACCAGCCTGGGTAGATGCCCGGTTGG
AGAAACGTTGGGTCGACGGGCAGGAGGACTGGCTCCAAGACTTGCACATT
CTAGCGAGGGAGACAGAAGACAGGGAGGAGGAAGAGCAGAAGGAGGAGGA
GGAGGAGGAAGGGAACGAGGGCGGTCATCGCATCTGGTCGGTGACGGGCC
CCTCCCGCTACCTGGCTCCCTTAGACCATGCAGAGGCTTCGTCCACTTCT
CCTTCGTCCACCATGTCCTCCTTCGTTCCTCTCTCCCTCCGCCAAGCCCC
CGTTCCGCGTCCCCGACGGCTTGGGCAGACGGTCAGGAGGCTTCGATCCA
CGCTAAGATCCATGCTCCGCCCTTCCCTGCTTTTCGGGGTGGAAAGGACG
CGGGTAGGGCTGTCGACGCGTGGAGACGGGGACATTCAAGAGTGGCACCT
CTACGGTCTTCGGTGCCGGGAGGGGACAGTGCAAAAGGAGGGGAGGGTGG
AATCGGCAGCAGAAAAGGAGAGCACGGGGAGGACTACAAAAAGACGTGCG
GAAAGAAGGGGGGAGCAAAACATACTATTGGGCAAAATGGGGATCAAAGT
GAAACTTCCGGGGATAGGAGGACCCTCGGCTGTATATGACGCCGGTCGAG
CGTTGTTTGGCGAAGGGGGGAAGGAAGGGGCGGAGGGAGGGCCGTTGCCT
GTGGTGGTATTGGTCTGGTGTTTCGTACCGGTGGAGTTCCGAGGTCGCGG
CATTGGCCGCGTCATGATAGACATGGTGGAGGAGGCCGTGGTAGGCAGGG
GAAGGAAGGAGGGGGAGGAGGATGGCGGGGCGGGGTGGGAGGAACAGGAG
CCTAAAGATGCGCTTACCCCCCCCTTGGAAGCAAAAGGGAAGGGGAGAAG
AAGGGGGTATGTGATGTTGACGGTGGATGACAATGGAAGTGGCCGGTTGT
GGCAGTATTACCACGCGCTTGGATTTCGAATTGCACCTTCCTTAAGCAGC
GACGACTGCCAGATCATGCTTCGACCGATCGAATGTTGGAAGAGATGACA
CGATGAAAATCCAGTTGTATCATAAAAAATCTCAAATAAGAATGCGAGTG
AGACTCGACAAAGTAGAACACGCAGGAAAGGGAATACTGGCAGGGCAGGA
AACGACGGGATCGCGCTTGCACAGGGCCCTTCTCCTTCCTTCCCTCCTCT
CTCGATCAACAGCAATGCTCATTCCTTGCGTCTTTCAAATGAGTGGGTCT
TCCTGGACAGCTCTCCATC

protein sequence of rna6636

>rna6636-protein ID=rna6636-protein|Name=rna6636|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MSHLFDVRARHRLLPPRQLLLAAVSALFFSTCAIAVDRSKGHSSFSDLPS
SSYSSVLVPKAESSLHCHSSAFAFPSPTHPSTSSSRQDWIKRQPFSPSST
FSRGGAPAKGRDCRNARPIKTIGPGVLLPLFLFLHSSQASPFDPHPLPLM
LSLCFFNGWYIRVTDHEKQVAFAAIVGSFKHPGATNYTEHYVGLVYADRS
GKMQTAHAFPPPDSVTIERGSEGFDGVPSNFTWKAKGVGRLHVGKDEGLL
DIDLPGMRATAHFHDRVPWNAERPDTDGPEVGTGRGQWERGGQGGKEGGR
EGEGRGSVLSSFACCVHS

mRNA from alignment at CM002469.1:138714..141130-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6636 ID=rna6636|Name=rna6636|organism=Nannochloropsis gaditana|type=mRNA|length=2417bp|location=Sequence derived from alignment at CM002469.1:138714..141130- (Nannochloropsis gaditana)
AAATCCCCACATGGTTTAAAGCCCCCCGAAATACAAGCGTCAATATCCTT
CAAAACGGATATCAATTGTTCAGATCATCCAGCAATTTCTAATACTGCAA
TGGGCGTAGGGATTGTCTCTGGAACCGTGCCCTTCCCCTGCCTCATGTCA
GGCGAGCCCCAGCACTTATGAAGTGCAGGGCCCACCTGACCAGTTGGCAC
ATTCACATACAGATGTATTAGATGCGGCATGTCATTATGTTTGCGTGAAA
CTTACGCTGTTCTCATCTCTTTTCAACACGTGCCTTATTTGGACCGGGGG
GGAGAAAAAGGAAAGTGAGCAGGCTTTGAAGTTGCCCTGCACATGGGTAA
ATTCACTGAAATGATTCAATTTTCCAGACCTTTCGCACAGCGCACAGGTA
CTTGACCATCTAGTACATTTGCCATGGTAAGCTCCTGAGTCGTCGGCCCT
TCAGCCCATCCTATAATCACACATCGGCTTACGTGTCATGACCCGCCAGA
GTCACCTCTTTGATGTTCGAGCCCGCCACCGCCTCCTTCCACCCCGTCAA
CTCCTCCTAGCCGCGGTCTCCGCGCTTTTCTTCTCCACATGCGCGATAGC
AGTTGACCGCTCCAAAGGCCACTCTTCATTTTCGGACCTTCCTTCATCAA
GCTACTCGTCCGTGCTGGTCCCAAAAGCAGAAAGCTCCTTGCACTGTCAT
TCCTCCGCCTTCGCTTTTCCGTCTCCCACCCACCCGTCTACCTCTTCTTC
CCGACAAGATTGGATAAAACGGCAGCCTTTTTCACCTTCCTCCACCTTTT
CAAGAGGCGGCGCGCCTGCTAAAGGACGCGACTGTCGGAATGCACGGCCC
ATCAAGACGATAGGGCCGGGAGTGCTCCTGCCCCTCTTCCTCTTCCTCCA
CTCCTCCCAGGCCTCCCCCTTCGACCCCCACCCCCTCCCACTTATGTTGA
GCCTTTGTTTTTTCAATGGTTGGTACATCCGGGTCACCGACCACGAGAAA
CAGGTGGCGTTCGCCGCCATCGTGGGATCGTTCAAGCATCCCGGGGCCAC
TAATTATACGGAGCATTACGTAGGATTGGTCTACGCGGACCGGTCCGGGA
AGATGCAGACGGCGCACGCCTTTCCCCCGCCCGACAGTGTGACGATTGAA
CGGGGAAGCGAGGGTTTTGACGGCGTTCCCAGTAACTTCACGTGGAAGGC
CAAGGGGGTAGGACGCTTGCATGTTGGAAAGGACGAGGGCCTGCTGGACA
TTGACCTGCCGGGAATGCGGGCCACAGCGCACTTTCACGACCGAGTGCCT
TGGAACGCGGAAAGGCCAGACACGGACGGACCAGAGGTGGGCACGGGGAG
AGGGCAGTGGGAGAGAGGGGGGCAGGGAGGGAAGGAGGGAGGGAGGGAGG
GTGAAGGGAGGGGCAGTGTCCTCTCCTCTTTCGCATGCTGTGTTCATTCT
TGACGCTCGGTCTTCTCACGATGGCCATTCGCCCTTTCTCCCCACCCACC
ATGTCTTACTTCCGGGTATCCAGGGATGGTTGGGTCGGACCCCTCTGCTC
CCGTGCCGGTACTTTGTCCACTCCCTCGCCTCTCGCACCACCTACAGCCT
CCGCCTCCGGCCCCGGCCTCCCTCCCTCGCTCCCTCCACGCGTCCCCCCA
CCCATCTCGCCGGACAGGGCTACGCGCACATGGAAAGCAACCACGGGAAC
TGTTTCCCCTCAGCTTGGATTTGGTGCAATGCCATCGGCCCCGACCGGGC
CGTCTCCCTGCTTATGGTGGGGGGAAAATTCGAAATCGGCCCCTCGGCGC
CCACCACTTGGATCCTCACACTCCGCTCTCCCCGCTTCAATTGGGTCTTT
CGGACCACGGACCTCGACGAGGTGAACGCGCACTTGCAGTACACGACCGG
CACGCTCCAGGTCCAGGCTCGCTCCCGCTGTGGGCGACGCCGGCTGACCG
TGAGTCTCTGCGCCCCCGTCGGATCCTTCGGAGCGCCCATTTACGTCCCC
ACAGCCCAAGGCTTCTCCTGTCAGCCGGGGTGCCGGGAATCGTTCACAGG
GAAGGCGATCATCCGTGCCGTGGACGAGGGGGAGGGCGGGGGGGGGCGTA
TAGTCAGGGAGGAGACCCATGAGGTGCCCTTGGCGGCCTTGGAGCTCGGG
GGGGAGATGCAACGATTGTGAAGGAGGGATGTACAGCGCGGTGGTTGTTT
TACGTGGTGGCTGAGAGGGGGGGGTAGAGGGTGGGCTGGCCAGCGGGCTC
ACACCCGAGGGCTTTGGGAAAACGTCCACAAAAGAAGGTGAAGGAACGTA
CAGGGGGGAGGAAGTAGGGATGATGGAGAGCTGTCCAGGAAGACCCACTC
ATTTGAAAGACGCAAGGAATGAGCATTGCTGTTGATCGAGAGAGGAGGGA
AGGAAGGAGAAGGGCCC

Coding sequence (CDS) from alignment at CM002469.1:138714..141130-

>rna6636 ID=rna6636|Name=rna6636|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at CM002469.1:138714..141130- (Nannochloropsis gaditana)
AGTCACCTCTTTGATGTTCGAGCCCGCCACCGCCTCCTTCCACCCCGTCA
ACTCCTCCTAGCCGCGGTCTCCGCGCTTTTCTTCTCCACATGCGCGATAG
CAGTTGACCGCTCCAAAGGCCACTCTTCATTTTCGGACCTTCCTTCATCA
AGCTACTCGTCCGTGCTGGTCCCAAAAGCAGAAAGCTCCTTGCACTGTCA
TTCCTCCGCCTTCGCTTTTCCGTCTCCCACCCACCCGTCTACCTCTTCTT
CCCGACAAGATTGGATAAAACGGCAGCCTTTTTCACCTTCCTCCACCTTT
TCAAGAGGCGGCGCGCCTGCTAAAGGACGCGACTGTCGGAATGCACGGCC
CATCAAGACGATAGGGCCGGGAGTGCTCCTGCCCCTCTTCCTCTTCCTCC
ACTCCTCCCAGGCCTCCCCCTTCGACCCCCACCCCCTCCCACTTATGTTG
AGCCTTTGTTTTTTCAATGGTTGGTACATCCGGGTCACCGACCACGAGAA
ACAGGTGGCGTTCGCCGCCATCGTGGGATCGTTCAAGCATCCCGGGGCCA
CTAATTATACGGAGCATTACGTAGGATTGGTCTACGCGGACCGGTCCGGG
AAGATGCAGACGGCGCACGCCTTTCCCCCGCCCGACAGTGTGACGATTGA
ACGGGGAAGCGAGGGTTTTGACGGCGTTCCCAGTAACTTCACGTGGAAGG
CCAAGGGGGTAGGACGCTTGCATGTTGGAAAGGACGAGGGCCTGCTGGAC
ATTGACCTGCCGGGAATGCGGGCCACAGCGCACTTTCACGACCGAGTGCC
TTGGAACGCGGAAAGGCCAGACACGGACGGACCAGAGGTGGGCACGGGGA
GAGGGCAGTGGGAGAGAGGGGGGCAGGGAGGGAAGGAGGGAGGGAGGGAG
GGTGAAGGGAGGGGCAGTGTCCTCTCCTCTTTCGCATGCTGTGTTCATTC
TTGAATGAGTCACCTCTTTGATGTTCGAGCCCGCCACCGCCTCCTTCCAC
CCCGTCAACTCCTCCTAGCCGCGGTCTCCGCGCTTTTCTTCTCCACATGC
GCGATAGCAGTTGACCGCTCCAAAGGCCACTCTTCATTTTCGGACCTTCC
TTCATCAAGCTACTCGTCCGTGCTGGTCCCAAAAGCAGAAAGCTCCTTGC
ACTGTCATTCCTCCGCCTTCGCTTTTCCGTCTCCCACCCACCCGTCTACC
TCTTCTTCCCGACAAGATTGGATAAAACGGCAGCCTTTTTCACCTTCCTC
CACCTTTTCAAGAGGCGGCGCGCCTGCTAAAGGACGCGACTGTCGGAATG
CACGGCCCATCAAGACGATAGGGCCGGGAGTGCTCCTGCCCCTCTTCCTC
TTCCTCCACTCCTCCCAGGCCTCCCCCTTCGACCCCCACCCCCTCCCACT
TATGTTGAGCCTTTGTTTTTTCAATGGTTGGTACATCCGGGTCACCGACC
ACGAGAAACAGGTGGCGTTCGCCGCCATCGTGGGATCGTTCAAGCATCCC
GGGGCCACTAATTATACGGAGCATTACGTAGGATTGGTCTACGCGGACCG
GTCCGGGAAGATGCAGACGGCGCACGCCTTTCCCCCGCCCGACAGTGTGA
CGATTGAACGGGGAAGCGAGGGTTTTGACGGCGTTCCCAGTAACTTCACG
TGGAAGGCCAAGGGGGTAGGACGCTTGCATGTTGGAAAGGACGAGGGCCT
GCTGGACATTGACCTGCCGGGAATGCGGGCCACAGCGCACTTTCACGACC
GAGTGCCTTGGAACGCGGAAAGGCCAGACACGGACGGACCAGAGGTGGGC
ACGGGGAGAGGGCAGTGGGAGAGAGGGGGGCAGGGAGGGAAGGAGGGAGG
GAGGGAGGGTGAAGGGAGGGGCAGTGTCCTCTCCTCTTTCGCATGCTGTG
TTCATTCTTGAATG

Synonyms

Publications