EWM24059.1, cds6620 (CDS) Nannochloropsis gaditana

Overview
NameEWM24059.1
Unique Namecds6620
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:140705..140707 -
Alignment locationCM002469.1:139678..140631 -

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Properties
Property NameValue
Protein idEWM24059.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100063g24.3884.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:140705..140707 -
CM002469.1supercontigCM002469.1:139678..140631 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24059.1 vs. NCBI_GenBank
Match: gi|585105351|gb|EWM24059.1| (hypothetical protein Naga_100063g24 [Nannochloropsis gaditana])

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0 
Query:    1 MSHLFDVRARHRLLPPRQLLLAAVSALFFSTCAIAVDRSKGHSSFSDLPSSSYSSVLVPKAESSLHCHSSAFAFPSPTHPSTSSSRQDWIKRQPFSPSSTFSRGGAPAKGRDCRNARPIKTIGPGVLLPLFLFLHSSQASPFDPHPLPLMLSLCFFNGWYIRVTDHEKQVAFAAIVGSFKHPGATNYTEHYVGLVYADRSGKMQTAHAFPPPDSVTIERGSEGFDGVPSNFTWKAKGVGRLHVGKDEGLLDIDLPGMRATAHFHDRVPWNAERPDTDGPEVGTGRGQWERGGQGGKEGGREGEGRGSVLSSFACCVHS 318
            MSHLFDVRARHRLLPPRQLLLAAVSALFFSTCAIAVDRSKGHSSFSDLPSSSYSSVLVPKAESSLHCHSSAFAFPSPTHPSTSSSRQDWIKRQPFSPSSTFSRGGAPAKGRDCRNARPIKTIGPGVLLPLFLFLHSSQASPFDPHPLPLMLSLCFFNGWYIRVTDHEKQVAFAAIVGSFKHPGATNYTEHYVGLVYADRSGKMQTAHAFPPPDSVTIERGSEGFDGVPSNFTWKAKGVGRLHVGKDEGLLDIDLPGMRATAHFHDRVPWNAERPDTDGPEVGTGRGQWERGGQGGKEGGREGEGRGSVLSSFACCVHS
Sbjct:    1 MSHLFDVRARHRLLPPRQLLLAAVSALFFSTCAIAVDRSKGHSSFSDLPSSSYSSVLVPKAESSLHCHSSAFAFPSPTHPSTSSSRQDWIKRQPFSPSSTFSRGGAPAKGRDCRNARPIKTIGPGVLLPLFLFLHSSQASPFDPHPLPLMLSLCFFNGWYIRVTDHEKQVAFAAIVGSFKHPGATNYTEHYVGLVYADRSGKMQTAHAFPPPDSVTIERGSEGFDGVPSNFTWKAKGVGRLHVGKDEGLLDIDLPGMRATAHFHDRVPWNAERPDTDGPEVGTGRGQWERGGQGGKEGGREGEGRGSVLSSFACCVHS 318
[Close]
BLAST of EWM24059.1 vs. NCBI_GenBank
Match: gi|299473051|emb|CBN77444.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.270e-9
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0 
Query:  202 KMQTAHAFPPPDSVTIERGSEGFDGVPS-----NFTWKAKGVGRLHVGKDEGLLDIDLPGMRATAHFHDRVPWNAERPDTDGPE 280
            +  T HAFPP D+VTI    E  +GVP+     +FTW+A G+G   V  D+G L   LP +   A F  R PW+ ERP++ GPE
Sbjct:  366 RTHTFHAFPPADTVTILCRGEPVNGVPNLRDDPSFTWEADGIGSFAVDGDKGRLSFQLPELSVAASFRYRQPWSEERPNSAGPE 449
The following BLAST results are available for this feature:
BLAST of EWM24059.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105351|gb|EWM24059.1|0.000e+0100.00hypothetical protein Naga_100063g24 [Nannochlorops... [more]
gi|299473051|emb|CBN77444.1|1.270e-944.05conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6636rna6636Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications