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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna large subunit methyltransferase i |
| Orig transcript id | gnl|cribi|Naga_100063g20.3891.mrna |
| Orig protein id | gnl|cribi|Naga_100063g20.3891 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:132037..134162 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6633 ID=rna6633|Name=rna6633|organism=Nannochloropsis gaditana|type=mRNA|length=2181bp
AGTACTCGCTCCAACACATGTCTCCCTCTTGTCACATAGCATATCACCTC
CACAATACATCTCTTTTTACAGCAAACGGCAATGACGACTCGCCGCAAAG
GCAAATCCTCCTCAATGTCCTCTCCTAGAAAGACGACCAACAAGGGCATA
ATTCCTGACTCTGGTCATAGCGGAGAGCGCGAGGAAAACACACGCCCGAC
CGACAACACGGCCCCTTCTTCCTTTTTTAAACTTTGGACTTCTGCACCTT
TCGTAGTCATCTTCGCCATCATGGCAATTGCATTCGCGCTGGGCTTGCAA
CACCAATCCCAAGGCATGGATTTGGCGGACAACATTATCAACCTCCTGCA
AGATTATTCAGGGGCAGTATCTGACGTCCCAAGCCTCTCGAATTGGGATG
CGGCACAGATGCCACACAAAGCCCAGAGACAAAAGCAAAGACGGAGGACA
AGCAAGGAGGTCAATCGCCGTCTTGCCCCTACTCTGTCACGAAATATGAC
CGTACTCATTCATGACAACGGCGAGAGCACTCCTGCTGGCTCCTTGTATC
TGGAGCCGAAGACAACGACATCGATCGAGGAGCTCAAATCTGCCGTGGGC
CTTGTGATTGACGCGTGTCACGGCGGGACCTGCCGTGTCTTCGACCGTTA
CGGCTACGAAATTAAAGCCCTGGGGGCCCTACACGACGAGCAACTCCTCT
TTGCCGTCCCCCCCAGCAGGCATTTTGTATGGCCAGCCTTCGAGATCGGC
CATCGCGTGGCCGTGCCTGGGGTCACGTCCTCCTTGCCCGGACATCCCAT
CATTCTCGAGACCCTCTCCGATTCCCCACGTGTCTTTATGTTGGAGAATT
TTCTTTCCGCCGAAGACGCTGACGAAGTGATCGAAACGACGCTTGGTATC
ACCGCCGCCGGCTTCGCCCTGAAGAGATCTACGACTGGCACCCAAGGGGC
GGTCGTTTCTTCGCAACGCACGAGTGAGAACGCCTTCGACACCACCTCGC
CCGTGGCCATGAAGCTGAAGCGAAGGGTCTTTGATCTTCTCGGCATGCGA
CCCTACGTGGAAACATGGGCAGACGGACTCCAGGTGCTTCGTTACAACGC
CAGCAAGGCCTATATTCCGCACATGGACTACCTCGAGTTCGATAGCAATG
CGGACCATAACTTTGACTCCGCCAGCCCCGGAGGCACCAACAGGTTTGCG
ACTGTACTTCTGTACCTGACGGACGTCGAGGAAGGGGGCGAGACGGTCTT
TCCCCTGGGGGAGCCCTTGGAAAAAGAGATGAGGACAACGCAGGAGGTCC
AGGCGGAGGCTCGGGCCCGGGGGCGCGCGGCGGATCTGAAGCCGGGGTCG
TGGGAGGAAGAGATGACAGAAACCTGCATCTCCCGCCTGGCCGTCAAGCC
GCGAAAGGGTCGTGCGGTGTTGTTCTACAGCCAACATCCAGACGGAAGGC
CGGATGAGAGAAGTCTCCACGGGGCCTGCCCGGTTGTGAAGGGAGTCAAA
TGGGCCGCCAACCTATGGGTGTGGAACGGCCCTCGTTTCGGTCACAGCGC
CACTTCCCTAGCCAAGGAAGCGGAGGGTAAAATCCAGGCGGTCTTCAGCA
GTGCAGTGGAGGGCGTGGCTTTGTATTGGGAGACGACTCGGTGGGGGAAA
ATGGGGCCTGGAGAGGCCGAGCTGAAAGCCATGACCTACCAGGGGCACAA
GTGGAACGTGAGACGGGACGAAGGAGACGAGCATGGGGCTGTCCTGGCGT
CCTGGACGATCGAGGCCGAAAAGGCGGAGGATGGGATCATCAAATATCGA
TACGAAGGATGAGGGAGGAGGGAAGCTTGGTTGGAAACTGGGTTGATGTG
TGGGAAGGAAGAAAAGCGGACGCGTCATCTCTAGCGCCTCTAGTCAGCCA
TCGGAACTTAGCCGTAAAAATGTCGCCTTGTCCCCTTCATACACAGAATG
GAAGCCAGCAAGATCGCACCAGGTACTGGCGAAGAGATGGTGCGTCTCTA
TTTGTTACAAAACCATGAAAGAACAAGGCGTCCAGAAGCCAAGGAGAAGG
CTCAAAATAACCGGTGTACATCCACGCCGCGAAGGACATGCCAAAAAATA
GCGCAAAGTAGCATACATTTCTTTGTGATTTGTATATTGGGCCCTATTGG
CAATCTTGATATAAACATGAGGGAATTTTAT back to topprotein sequence of rna6633 >rna6633-protein ID=rna6633-protein|Name=rna6633|organism=Nannochloropsis gaditana|type=polypeptide|length=511bp
MRRSLFVSALGLTTSLSLLLATRRAAAFALPAIPFFHSSRGWTSVIPVRD
QSATARAHKSSRKGGQYSVREGQEHRTSTRPRARETEVEPAARIQRDYPH
VVLRAGKARLFLEGNPLVYGEAVHEVVGHVADGDFVEVVDHRGNLIGKGC
YNSQSMYRVRLLWHAREKGEALYASSLEDIVARRVSTAWATRQALGLPNA
ETTCFRLVNGEGDKLSGLAADVFDKVCVVSSSSLWCERHKDFIIQGLEAS
LGPAGISTVWRRSEARLKQDGFVDPEEALRPAIDVKAEARKEGAYVWAKE
AGLKYKVYPELGQKTGFYCDQRQNRQMIQSLSRGKRVLDLFCYTGGFALN
AARGGAREAIGVDSSALAIETAMENARANDLEGHATFCKSDVLVYARDLG
KTGEKAFDIVIADPPKLAPTRRDLPRALHKYLKINRAVFRMVASGGLVLT
HTCSAALTQDPEEFRKMVTQAAHDVGRSITILQVSHAAPCHVQSPVYGES
NYLTAMLVAVF back to topmRNA from alignment at CM002469.1:132037..134162+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6633 ID=rna6633|Name=rna6633|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp|location=Sequence derived from alignment at CM002469.1:132037..134162+ (Nannochloropsis gaditana)
AATTCCGTATCCATTGTTCTTACAGAGATGAGACGAAGCCTCTTCGTCTC
TGCACTTGGTTTGACTACGTCGTTATCATTGCTCTTGGCAACGCGCCGGG
CTGCGGCTTTTGCCCTGCCTGCAATACCTTTCTTCCACTCTTCACGGGGT
TGGACCTCCGTTATTCCAGTTCGAGATCAGAGTGCCACTGCTAGAGCCCA
CAAGAGCAGCCGGAAAGGGGGACAGTATAGCGTCAGAGAAGGTCAGGAGC
ATCGCACGTCAACGCGTCCGCGAGCACGTGAGACAGAGGTCGAGCCTGCC
GCACGTATCCAGCGAGATTATCCTCATGTGGTCCTTCGAGCGGGCAAAGC
CCGTTTATTCTTGGAGGGCAACCCCTTAGTGTATGGAGAGGCCGTGCATG
AGGTGGTGGGCCATGTGGCTGACGGAGATTTTGTCGAGGTGGTCGATCAC
AGGGGAAATTTGATCGGCAAGGGGTGCTACAATTCACAATCCATGTACCG
CGTTCGTCTGTTGTGGCAtgcaagggagaaaggggaggctcTCTACGCTT
CGTCATTGGAGGATATCGTTGCCCGGCGGGTAAGTACTGCCTGGGCGACT
CGCCAAGCTCTGGGCTTGCCCAATGCCGAAACAACGTGCTTTCGTCTTGT
GAATGGCGAAGGGGACAAATTGAGCGGCCTGGCTGCGGACGTCTTTGACA
AAGTCTGCGTCGTCTCGAGCAGTTCCTTGTGGTGTGAGAGGCACAAAGAC
TTCATTATCCAAGGACTGGAGGCTTCTCTCGGCCCAGCGGGGATTTCCAC
GGTTTGGCGCCGGAGCGAGGCCCGGCTCAAGCAGGACGGGtttgtggacc
cggaggaggCCCTCAGACCCGCCATCGACGtcaaggcggaggcgcggaaa
gaaggggcaTACGTgtgggccaaggaggcgggctTGAAGTACAAGGTATA
CCCGGAGCTGGGTCAAAAAACGGGGTTTTATTGCGACCAGCGTCAGAACC
GGCAAATGATTCAGAGCCTCTCCCGTGGAAAACGCGTCTTGGACCTCTTC
TGTTACACGGGGGGGTTCGCATTGAACGGTACGGCGTCGGCGCGGGGGAT
AGGGTGtcaaaaagggaaaggacgacTTGAGGGGTGCATAGTGAAcgggg
agagcatggccaACGAAATTTTGACGGAACGGCATCCATGGGACGCAGGC
TTGAACTTCGTGCATACACTGTGTGAACCTCGTCTGTCTTTCCATTCtac
ccttttcctctgcaGCGGCCCGGGGGGGTGCCCGCGAAGCCATCGGAGTC
GACAGCTCCGCCCTGGCGATCGAGACTGCGATGGAGAATGCGCGGGCGAA
CGACCTGGAAGGCCATGCCACGTTTTGTAAGTCCGACGTCCTTGTCTACG
CTCGCGACCTGGGCAAAACCGGCGAGAAAGCTTTCGACATCGTCATTGCC
GACCCCCCCAAACTCGCCCCGACCCGGCGTGACCTGCCGCGAGCCCTGCA
CAAGTACCTGAAGATCAATCGCGCGGTGTTTCGGATGGTGGCGAGTGGTG
GCTTGGTCCTGACCCACACCTGTTCGGCCGCGCTCACCCAGGACCCGGAA
GAGTTTCGGAAGATGGTCACTCAGGCGGTACGTGCGGAGGAGTGTagagg
tggcggggaggaggagataagGGGTTCGAAACGTGGCGAAGGGTGCAGGA
ATGCTACGTGACAGGGAaacgagaggggagaagtaATGGCTCAAGCGGTT
CGACTCGATTTCCCCCACCCCATCCATTTTCCATCCCCAGGCGCACGACG
TAGGGCGCTCCATCACCATCCTGCAAGTCAGCCACGCGGCCCCTTGCCAC
GTTCAATCCCCCGTCTACGGGGAATCGAACTACCTGACAGCGATGCTCGT
GGCGGTCTTCTAGACGCGTGctcgcgggaggaggattcgTGCGTAGTGTG
GATATGGACAGGAACGCATGGGAGAAATGAACGCTGTTGAGGGAAGCCTC
TGGCGAGAATAGGTCTTGCGGGATCCGCCCTGGTGCCAAAGTATATGCTG
TCGTTACGGTGCCTGGTCCTCAAAGACTAAAGCAAAGTAAATAACTACCA
CTACTTCCATCCTGGCAGGCCTCGCT back to topCoding sequence (CDS) from alignment at CM002469.1:132037..134162+ >rna6633 ID=rna6633|Name=rna6633|organism=Nannochloropsis gaditana|type=CDS|length=4608bp|location=Sequence derived from alignment at CM002469.1:132037..134162+ (Nannochloropsis gaditana)
ATGAGACGAAGCCTCTTCGTCTCTGCACTTGGTTTGACTACGTCGTTATC
ATTGCTCTTGGCAACGCGCCGGGCTGCGGCTTTTGCCCTGCCTGCAATAC
CTTTCTTCCACTCTTCACGGGGTTGGACCTCCGTTATTCCAGTTCGAGAT
CAGAGTGCCACTGCTAGAGCCCACAAGAGCAGCCGGAAAGGGGGACAGTA
TAGCGTCAGAGAAGGTCAGGAGCATCGCACGTCAACGCGTCCGCGAGCAC
GTGAGACAGAGGTCGAGCCTGCCGCACGTATCCAGCGAGATTATCCTCAT
GTGGTCCTTCGAGCGGGCAAAGCCCGTTTATTCTTGGAGGGCAACCCCTT
AGTGTATGGAGAGGCCGTGCATGAGGTGGTGGGCCATGTGGCTGACGGAG
ATTTTGTCGAGGTGGTCGATCACAGGGGAAATTTGATCGGCAAGGGGTGC
TACAATTCACAATCCATGTACCGCGTTCGTCTGTTGTGGCAtgcaaggga
gaaaggggaggctcTCTACGCTTCGTCATTGGAGGATATCGTTGCCCGGC
GGGTAAGTACTGCCTGGGCGACTCGCCAAGCTCTGGGCTTGCCCAATGCC
GAAACAACGTGCTTTCGTCTTGTGAATGGCGAAGGGGACAAATTGAGCGG
CCTGGCTGCGGACGTCTTTGACAAAGTCTGCGTCGTCTCGAGCAGTTCCT
TGTGGTGTGAGAGGCACAAAGACTTCATTATCCAAGGACTGGAGGCTTCT
CTCGGCCCAGCGGGGATTTCCACGGTTTGGCGCCGGAGCGAGGCCCGGCT
CAAGCAGGACGGGtttgtggacccggaggaggCCCTCAGACCCGCCATCG
ACGtcaaggcggaggcgcggaaagaaggggcaTACGTgtgggccaaggag
gcgggctTGAAGTACAAGGTATACCCGGAGCTGGGTCAAAAAACGGGGTT
TTATTGCGACCAGCGTCAGAACCGGCAAATGATTCAGAGCCTCTCCCGTG
GAAAACGCGTCTTGGACCTCTTCTGTTACACGGGGGGGTTCGCATTGAAC
GCGGCCCGGGGGGGTGCCCGCGAAGCCATCGGAGTCGACAGCTCCGCCCT
GGCGATCGAGACTGCGATGGAGAATGCGCGGGCGAACGACCTGGAAGGCC
ATGCCACGTTTTGTAAGTCCGACGTCCTTGTCTACGCTCGCGACCTGGGC
AAAACCGGCGAGAAAGCTTTCGACATCGTCATTGCCGACCCCCCCAAACT
CGCCCCGACCCGGCGTGACCTGCCGCGAGCCCTGCACAAGTACCTGAAGA
TCAATCGCGCGGTGTTTCGGATGGTGGCGAGTGGTGGCTTGGTCCTGACC
CACACCTGTTCGGCCGCGCTCACCCAGGACCCGGAAGAGTTTCGGAAGAT
GGTCACTCAGGCGGCGCACGACGTAGGGCGCTCCATCACCATCCTGCAAG
TCAGCCACGCGGCCCCTTGCCACGTTCAATCCCCCGTCTACGGGGAATCG
AACTACCTGACAGCGATGCTCGTGGCGGTCTTCTAGATGAGACGAAGCCT
CTTCGTCTCTGCACTTGGTTTGACTACGTCGTTATCATTGCTCTTGGCAA
CGCGCCGGGCTGCGGCTTTTGCCCTGCCTGCAATACCTTTCTTCCACTCT
TCACGGGGTTGGACCTCCGTTATTCCAGTTCGAGATCAGAGTGCCACTGC
TAGAGCCCACAAGAGCAGCCGGAAAGGGGGACAGTATAGCGTCAGAGAAG
GTCAGGAGCATCGCACGTCAACGCGTCCGCGAGCACGTGAGACAGAGGTC
GAGCCTGCCGCACGTATCCAGCGAGATTATCCTCATGTGGTCCTTCGAGC
GGGCAAAGCCCGTTTATTCTTGGAGGGCAACCCCTTAGTGTATGGAGAGG
CCGTGCATGAGGTGGTGGGCCATGTGGCTGACGGAGATTTTGTCGAGGTG
GTCGATCACAGGGGAAATTTGATCGGCAAGGGGTGCTACAATTCACAATC
CATGTACCGCGTTCGTCTGTTGTGGCAtgcaagggagaaaggggaggctc
TCTACGCTTCGTCATTGGAGGATATCGTTGCCCGGCGGGTAAGTACTGCC
TGGGCGACTCGCCAAGCTCTGGGCTTGCCCAATGCCGAAACAACGTGCTT
TCGTCTTGTGAATGGCGAAGGGGACAAATTGAGCGGCCTGGCTGCGGACG
TCTTTGACAAAGTCTGCGTCGTCTCGAGCAGTTCCTTGTGGTGTGAGAGG
CACAAAGACTTCATTATCCAAGGACTGGAGGCTTCTCTCGGCCCAGCGGG
GATTTCCACGGTTTGGCGCCGGAGCGAGGCCCGGCTCAAGCAGGACGGGt
ttgtggacccggaggaggCCCTCAGACCCGCCATCGACGtcaaggcggag
gcgcggaaagaaggggcaTACGTgtgggccaaggaggcgggctTGAAGTA
CAAGGTATACCCGGAGCTGGGTCAAAAAACGGGGTTTTATTGCGACCAGC
GTCAGAACCGGCAAATGATTCAGAGCCTCTCCCGTGGAAAACGCGTCTTG
GACCTCTTCTGTTACACGGGGGGGTTCGCATTGAACGCGGCCCGGGGGGG
TGCCCGCGAAGCCATCGGAGTCGACAGCTCCGCCCTGGCGATCGAGACTG
CGATGGAGAATGCGCGGGCGAACGACCTGGAAGGCCATGCCACGTTTTGT
AAGTCCGACGTCCTTGTCTACGCTCGCGACCTGGGCAAAACCGGCGAGAA
AGCTTTCGACATCGTCATTGCCGACCCCCCCAAACTCGCCCCGACCCGGC
GTGACCTGCCGCGAGCCCTGCACAAGTACCTGAAGATCAATCGCGCGGTG
TTTCGGATGGTGGCGAGTGGTGGCTTGGTCCTGACCCACACCTGTTCGGC
CGCGCTCACCCAGGACCCGGAAGAGTTTCGGAAGATGGTCACTCAGGCGG
CGCACGACGTAGGGCGCTCCATCACCATCCTGCAAGTCAGCCACGCGGCC
CCTTGCCACGTTCAATCCCCCGTCTACGGGGAATCGAACTACCTGACAGC
GATGCTCGTGGCGGTCTTCTAGATGAGACGAAGCCTCTTCGTCTCTGCAC
TTGGTTTGACTACGTCGTTATCATTGCTCTTGGCAACGCGCCGGGCTGCG
GCTTTTGCCCTGCCTGCAATACCTTTCTTCCACTCTTCACGGGGTTGGAC
CTCCGTTATTCCAGTTCGAGATCAGAGTGCCACTGCTAGAGCCCACAAGA
GCAGCCGGAAAGGGGGACAGTATAGCGTCAGAGAAGGTCAGGAGCATCGC
ACGTCAACGCGTCCGCGAGCACGTGAGACAGAGGTCGAGCCTGCCGCACG
TATCCAGCGAGATTATCCTCATGTGGTCCTTCGAGCGGGCAAAGCCCGTT
TATTCTTGGAGGGCAACCCCTTAGTGTATGGAGAGGCCGTGCATGAGGTG
GTGGGCCATGTGGCTGACGGAGATTTTGTCGAGGTGGTCGATCACAGGGG
AAATTTGATCGGCAAGGGGTGCTACAATTCACAATCCATGTACCGCGTTC
GTCTGTTGTGGCAtgcaagggagaaaggggaggctcTCTACGCTTCGTCA
TTGGAGGATATCGTTGCCCGGCGGGTAAGTACTGCCTGGGCGACTCGCCA
AGCTCTGGGCTTGCCCAATGCCGAAACAACGTGCTTTCGTCTTGTGAATG
GCGAAGGGGACAAATTGAGCGGCCTGGCTGCGGACGTCTTTGACAAAGTC
TGCGTCGTCTCGAGCAGTTCCTTGTGGTGTGAGAGGCACAAAGACTTCAT
TATCCAAGGACTGGAGGCTTCTCTCGGCCCAGCGGGGATTTCCACGGTTT
GGCGCCGGAGCGAGGCCCGGCTCAAGCAGGACGGGtttgtggacccggag
gaggCCCTCAGACCCGCCATCGACGtcaaggcggaggcgcggaaagaagg
ggcaTACGTgtgggccaaggaggcgggctTGAAGTACAAGGTATACCCGG
AGCTGGGTCAAAAAACGGGGTTTTATTGCGACCAGCGTCAGAACCGGCAA
ATGATTCAGAGCCTCTCCCGTGGAAAACGCGTCTTGGACCTCTTCTGTTA
CACGGGGGGGTTCGCATTGAACGCGGCCCGGGGGGGTGCCCGCGAAGCCA
TCGGAGTCGACAGCTCCGCCCTGGCGATCGAGACTGCGATGGAGAATGCG
CGGGCGAACGACCTGGAAGGCCATGCCACGTTTTGTAAGTCCGACGTCCT
TGTCTACGCTCGCGACCTGGGCAAAACCGGCGAGAAAGCTTTCGACATCG
TCATTGCCGACCCCCCCAAACTCGCCCCGACCCGGCGTGACCTGCCGCGA
GCCCTGCACAAGTACCTGAAGATCAATCGCGCGGTGTTTCGGATGGTGGC
GAGTGGTGGCTTGGTCCTGACCCACACCTGTTCGGCCGCGCTCACCCAGG
ACCCGGAAGAGTTTCGGAAGATGGTCACTCAGGCGGCGCACGACGTAGGG
CGCTCCATCACCATCCTGCAAGTCAGCCACGCGGCCCCTTGCCACGTTCA
ATCCCCCGTCTACGGGGAATCGAACTACCTGACAGCGATGCTCGTGGCGG
TCTTCTAG back to top
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