rna6631, rna6631 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6631
Unique Name	rna6631
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1926
Alignment location	CM002469.1:127301..129386 +

Link to JBrowse

Properties


Property Name	Value
Product	arsenite inducuble rna associated protein aip
Orig transcript id	gnl\|cribi\|Naga_100063g18.3878.mrna
Orig protein id	gnl\|cribi\|Naga_100063g18.3878
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:127301..129386 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g18	gene6409	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6631	rna6631-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24053.1	cds6615	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:127301..129386+
coding sequence from alignment at CM002469.1:127301..129386+

mRNA sequence

>rna6631 ID=rna6631|Name=rna6631|organism=Nannochloropsis gaditana|type=mRNA|length=1926bp
ATTCTGCGCCCATAAATATTGTCGCCTCGTGCATTCTAAGCTTGCATGTG
CACGTACGACTCTCTCCGAACACATTTCGCACATGTTGTGGGCACGCACT
GTGTCTACGGCCAGGTATTCCGAACAACTCAGTCGCTAATAACAAAGCAG
CGACGCGTTCGAGGCACTTCCCATGGCCCATCATGATGATGGTTTCCTAC
AACAAAGAAAACAATCAAGCGGGCAGAATTGTTCGCGCGTCGGGCGTCCG
GGTTCTGTTTCTTTGTGTTAGGCCGTCATTCGGTGGTGACAAACGCTTCT
ATGTAATGAGAAGTCAATGTCGCAATGCGTAAATTTTCGTGCGACCTGTG
GTTAAGTGTAGGAACACCTTTTTAAGGGACAGCCGGTATCCGCCCAGATT
CAAATCTAACATCACTGCAACCTCATAGCGACACACAGAAATCAAATTAT
GAGCGGCCCAGCCCCTTTGGTCACTGGCAAGAAAGTCCTCGTAGCAGGGG
GTGGCGGATTTATTGGCTCACACTTGGCCAGGCGCCTCAAGAAGGACGGC
AACTATGTGGTAGTCGCGGATTGGAAGAAGAACGAGTTCATGGCCGAACC
CGAGTTCTGCGATGAATTCTTTTTGGTTGACCTTCGTGAGCTTGAGAACT
GTATCAAGGCCTCCAAAGGTTGCCACCATGTGTACAACCTGGCGGCAGAC
ATGGGCGGAATGGGTTTCATTGAATCGAACCAGTCAGTTCTCATGTGGAA
CAATACCATGGTTTCTTCCAACGTCCTAGAAGCCGCGCGCCGCAACGGTG
CCGAAAGGTACTTCTATTCCTCCACGGCCTGTGTCTACAACGAAGACCTT
CAGCTCGACCCGTCCAATCCGGGTTTGAAGGAAGGTGACGCCTGGCCTGC
CAAGCCCCAAGAGGTGTACGGGCTGGAGAAACTCTACCACGAGGAGATGG
CTTTGGCGTACTCGCGGGACTTCCCTCTCGTCAGCCGCATTGCCCGCTTC
CACAACGTGTACGGACCGTTTGGCACCTGGAAAGGCGGGCGAGAGAAAGC
GCCAGCTGCTTTCTGCCGCAAGGCCGTTGGCAGCACCGAGCATTTCGAGG
TCTGGGGCGACGGCGAGCAAACCCGCTCGTTCATGTACGTGGATGACTGC
GTGGAGGGCGTGCTTCGCATCATGATGTCGGACACGGCAACAATGCCGTT
GAATCTGGGGACCGAACAAATGGGTGTGCGTGGTCGAAACTCTGACAACA
CACTGATCCGGGAGATGCTCGGATGGGAGCCCTTGATTTCCATTGAGGAC
GGACTGCGGGAGACTTACTTCTGGATCAAGGGCCAGATCGAGAAGGAGAG
GGCCGCGGGAGTGGTCTTCGACTATTCGTCCTCCAAGGTGGTAGTGCAAA
CGACAGAGTCTTTGGATGCGCTCGCTTCAAAGCAGGAGAAATCAAACAGC
ATTCCTGAGTCTGACTCTGCCAGCAATGGTGTCCAGGTCGCCTGAGTCGC
CAGAGCAACTCATTGACGTGCGGTGGGAAAGGCAAATGAAGCCCGCAAGC
AGCTTTTAGATACGATGACATGGTAAGATGGTAGCAGGAATGAGAGTGCA
AATGACGAAAGCTTTTATTTAAAAGTGAGCGTAGAGAATAGGAATAATGA
GGGAAATAACAAGAAAAAAACACGAAAGAAAGAAATAGGACTACATATAC
ATATGCTGCCGGGTGCCAGGAGCTGGAAATCAGGAGGCATCAGTCTCCCA
CATTTTTCTGAATCAACACGTCCACAAGCCCTCACATCGCCTTCTTATCT
GAAACGGATGAACTGGTTTCTTTCGAAAAAGTCGATTTCCATGTCGACAT
TGAAAACGTGCATCTTCCCTTGGGCCCGCCGAGGCCTGCATAAAGAAGGG
AAGCAGGGTGTCGATATTCACTTCCG

protein sequence of rna6631

>rna6631-protein ID=rna6631-protein|Name=rna6631|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MEFQDLGAHCAVTTCNMRDFLPFLCDCCHKTHCLEHRTYSSHACPHQGRK
QQMAIRCPLCSATLALTAAQDPNVVWQLHSGSRDCDPTRKAKRERCAVKA
CKEILGPSNSHVCGVCRKRVCLRHRYQDQHACAGPGGRGGGRGIAGWFSN
GGGGASNTRNSNGNRKASTKKDARPSVPGEKGRSAPHPTRNSPSGFAPGT
TTTTSCNGNGQGSSHGGNGRRGSRDRQPDGASRSLQAVGDRRRGEGEARG
GKIEENGCSNNNLRDRQVVGVGSGYPGATSLAIGSSQAGQQVDGGCPYCH
ALFHDPVKLVEHVETMHKGDQLREGGGSGEGLSGCRLA

mRNA from alignment at CM002469.1:127301..129386+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6631 ID=rna6631|Name=rna6631|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp|location=Sequence derived from alignment at CM002469.1:127301..129386+ (Nannochloropsis gaditana)
ctcgcgtTCTTCACTGCGCCTCTCTCTTTGCCGATTTAAGACAGGTAGAA
CTGGCTCATCAAAGAATAGAATTACCATGGAGTTTCAAGATCTCGGCGCG
CACTGTGCGGTCACAACTTGTAACATGCgtgacttcctccccttcctttg
tgGTAAGTTCCCTCGCTCTAAGAAGTAATTCTCGTCATGTAATCGTCGTC
GTTAACTTTGGAAACGACTTTCTAATGTGAGGAGCAACCATAGGCCAGGA
AAGTGAGATTGAGGGTCAATTATTCGGGGGAAAGGCTGCATGAGGCCTCC
AGACCATGTCTGTCTGACTATTTTTATGCGCCAGAGCCTGACACGGGAGA
CGGCAGGCCTCATTGCTCGTCTAAAGAGCTGATGCGATCATAAATGCAAG
TGATATCTGTACTTTTATGTGCATGCATGTGCGTATAGGGTATACGAACC
GTGGAGGGGCCAAGCTCTTTCAAAGCTTCGGACCTAGGACGGTCATCCCT
GTTTAATGCCTAAGATACCGCATTTCATCAtatttcctccattttcaccg
ccctttccccctgcatTATTCCGCATGTCGTCATGTTGGCGCATGCAGCA
TATGGGCATTGTTTGCGAAGGACTTGTAAAGAACTCTTTTGCTTCTTGGA
GATCGAGTGCCTGTTCGGCCTCTTCGGGGCAATTCTCatctttcccccgt
ccttccattttctcctcctgctgcagaCTGCTGCCATAAAACTCATTGCT
TAGAGCATCGGACCTACTCCTCGCATGCTTGTCCGCACCAAGGACGGAAG
CAGCAGATGGCCATTCGGTGTCCTCTCTGCAGTGCCACGCTCGCGCTCAC
AGCTGCCCAAGACCCTAATGTTGTCTGGCAGCTTCATTCCGGGTCCCGCG
ACTGCGATCCTACCCGGAAGGCGAAAAGGGAACGTTGTGCGGTGAAAGCT
TGCAAAGAGATCCTGGGCCCCAGCAACAGCCATGTCTGTGGGGTGTGTAG
GAAGCGCGTCTGCCTACGACATCGATACCAAGACCAGCACGCCTGCGCGG
GaccaggaggtcgagggggagggagagggatcgCAGGGTGGTTCAGTAAT
GGTGGCGGGGGCGCGAGCAATACCAGGAACAGCAACGGTAATAGGAAAGC
GTCAACCAAGAAGGACGCTCGACCAAGCGTCCCAGGTGAGAAAGGGCGCT
CGGCGCCCCACCCGACCCGGAACTCTCCCAGCGGCTTCGCACCCGGCACA
ACCACCACTACCAGTTGTAATGGAAACGGTCAAGGTAGCAGCCATGGTGG
TAATGGACGGCGGGGGAGTCGTGACAGGCAGCCTGACGGCGCGTCGAGAA
GTCTGCAGGCTGTGGGGGACCGGCGTAGGGGCGAAGGCGAGGctagagga
gggaaaattgAGGAAAACGGATGCAGCAATAATAATCTTAGGGACAGGCA
GGTCGTCGGGGTGGGCAGTGGGTATCCCGGGGCCACCTCGTTGGCTATCG
GTTCCTCCCAAGCGGGTCAGCaggtggatggaggatgCCCCTATTGCCAC
GCCCTTTTCCACGACCCCGTGAAGCTGGTGGAGCACGTGGAGACAATGCA
CAAGGGGGACCAGctgcgggaaggcggggggagtggggagggactCTCCG
GGTGTCGGCTTGCATGACGGAGGAATGTGACATCCAGGGGCCCGGCGCAC
CGTCTCCGTCCTGTCCCTTGCCTAGTCTTCTCCCAAAGGGGTTTTAGACT
ATCGCTCGTTCGGAGACAAGAGAGCTTTGGGGCGGAACGTCGAcaatggg
aaagggagacggCGTGGGGGGGCTTAAGGCTACAAGGCATATCCCAAAGA
TTCCCAGACGAGATCTCGTCTGCCGGGCGAGCCACGAGAGCGGGGGCGAG
AATCGTTTGTCGGGGCGCCGGTCAAAGAGACTTTTGAAAGGTCTGCAGGA
GCCAGGGTACGCTTGTTGTACAGTGGGTGCCCCTAGGTTGGTAAGCATTA
TAAAATTCCCTCATGTTTATATCAAGATTGCCAATAGGGCCCAATATACA
AATCACAAAGAAATGTATGCTACTTTGCGCTATTTT

Coding sequence (CDS) from alignment at CM002469.1:127301..129386+

>rna6631 ID=rna6631|Name=rna6631|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002469.1:127301..129386+ (Nannochloropsis gaditana)
ATGGAGTTTCAAGATCTCGGCGCGCACTGTGCGGTCACAACTTGTAACAT
GCgtgacttcctccccttcctttgtgaCTGCTGCCATAAAACTCATTGCT
TAGAGCATCGGACCTACTCCTCGCATGCTTGTCCGCACCAAGGACGGAAG
CAGCAGATGGCCATTCGGTGTCCTCTCTGCAGTGCCACGCTCGCGCTCAC
AGCTGCCCAAGACCCTAATGTTGTCTGGCAGCTTCATTCCGGGTCCCGCG
ACTGCGATCCTACCCGGAAGGCGAAAAGGGAACGTTGTGCGGTGAAAGCT
TGCAAAGAGATCCTGGGCCCCAGCAACAGCCATGTCTGTGGGGTGTGTAG
GAAGCGCGTCTGCCTACGACATCGATACCAAGACCAGCACGCCTGCGCGG
GaccaggaggtcgagggggagggagagggatcgCAGGGTGGTTCAGTAAT
GGTGGCGGGGGCGCGAGCAATACCAGGAACAGCAACGGTAATAGGAAAGC
GTCAACCAAGAAGGACGCTCGACCAAGCGTCCCAGGTGAGAAAGGGCGCT
CGGCGCCCCACCCGACCCGGAACTCTCCCAGCGGCTTCGCACCCGGCACA
ACCACCACTACCAGTTGTAATGGAAACGGTCAAGGTAGCAGCCATGGTGG
TAATGGACGGCGGGGGAGTCGTGACAGGCAGCCTGACGGCGCGTCGAGAA
GTCTGCAGGCTGTGGGGGACCGGCGTAGGGGCGAAGGCGAGGctagagga
gggaaaattgAGGAAAACGGATGCAGCAATAATAATCTTAGGGACAGGCA
GGTCGTCGGGGTGGGCAGTGGGTATCCCGGGGCCACCTCGTTGGCTATCG
GTTCCTCCCAAGCGGGTCAGCaggtggatggaggatgCCCCTATTGCCAC
GCCCTTTTCCACGACCCCGTGAAGCTGGTGGAGCACGTGGAGACAATGCA
CAAGGGGGACCAGctgcgggaaggcggggggagtggggagggactCTCCG
GGTGTCGGCTTGCATGAATGGAGTTTCAAGATCTCGGCGCGCACTGTGCG
GTCACAACTTGTAACATGCgtgacttcctccccttcctttgtgaCTGCTG
CCATAAAACTCATTGCTTAGAGCATCGGACCTACTCCTCGCATGCTTGTC
CGCACCAAGGACGGAAGCAGCAGATGGCCATTCGGTGTCCTCTCTGCAGT
GCCACGCTCGCGCTCACAGCTGCCCAAGACCCTAATGTTGTCTGGCAGCT
TCATTCCGGGTCCCGCGACTGCGATCCTACCCGGAAGGCGAAAAGGGAAC
GTTGTGCGGTGAAAGCTTGCAAAGAGATCCTGGGCCCCAGCAACAGCCAT
GTCTGTGGGGTGTGTAGGAAGCGCGTCTGCCTACGACATCGATACCAAGA
CCAGCACGCCTGCGCGGGaccaggaggtcgagggggagggagagggatcg
CAGGGTGGTTCAGTAATGGTGGCGGGGGCGCGAGCAATACCAGGAACAGC
AACGGTAATAGGAAAGCGTCAACCAAGAAGGACGCTCGACCAAGCGTCCC
AGGTGAGAAAGGGCGCTCGGCGCCCCACCCGACCCGGAACTCTCCCAGCG
GCTTCGCACCCGGCACAACCACCACTACCAGTTGTAATGGAAACGGTCAA
GGTAGCAGCCATGGTGGTAATGGACGGCGGGGGAGTCGTGACAGGCAGCC
TGACGGCGCGTCGAGAAGTCTGCAGGCTGTGGGGGACCGGCGTAGGGGCG
AAGGCGAGGctagaggagggaaaattgAGGAAAACGGATGCAGCAATAAT
AATCTTAGGGACAGGCAGGTCGTCGGGGTGGGCAGTGGGTATCCCGGGGC
CACCTCGTTGGCTATCGGTTCCTCCCAAGCGGGTCAGCaggtggatggag
gatgCCCCTATTGCCACGCCCTTTTCCACGACCCCGTGAAGCTGGTGGAG
CACGTGGAGACAATGCACAAGGGGGACCAGctgcgggaaggcggggggag
tggggagggactCTCCGGGTGTCGGCTTGCATGA

Synonyms

Publications