rna6630, rna6630 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6630
Unique Name	rna6630
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1278
Alignment location	CM002469.1:125041..127203 -

Link to JBrowse

Properties


Property Name	Value
Product	gdp-mannose -epimerase
Orig transcript id	gnl\|cribi\|Naga_100063g17.3892.mrna
Orig protein id	gnl\|cribi\|Naga_100063g17.3892
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:125041..127203 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g17	gene6408	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6630	rna6630-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24067.1	cds6614	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:125041..127203-
coding sequence from alignment at CM002469.1:125041..127203-

mRNA sequence

>rna6630 ID=rna6630|Name=rna6630|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp
ATGGACGGGGATACTTATTTCGTCTGCATGCACGAAAAGATTGTAGAATT
TGCATGTCCCATCGAGGATAATGGTGCTCCTGAGAAGGATACCAATATTT
GCACCAAAGAACGGCATGGCAAAAGCAAGAGCGACAACGAGATCTTTCTT
TCAAATCAGCCGGATATTCCTGCGTCCAAAACAATTCCTCCTTGTCCTGG
TGCTGAGCTTCTGACGCAAATCGGCCCCTTCCGGCTAGATCCTGAAACGG
TTGGCCATAAGATAGACGCCAAGGTGATGCGAAGATGCTTGGAGAGCTGC
GTAGCGCAAGCCAAAGCAAGCCAAATACTTGCTAGCGCCTCTGATTGGTG
GATAAGACATGCCGATATTCGTGGCGCCCTTTCAAGAGATTGTCGTATTT
TAGGAGAAATCGCCGTGGGCGCCGTGAACAGTGCGAAAACTGGTGAATTG
TGGTCCTTGCCTAGGGTTCTAAGGCCTCAACACTATCCTCCCTACTTAAA
TCGCTACTCTGCGGTAGATGCAACGAGCCCATCGCGTCCAATTTCTGCTG
ATAGCTTTCTGGGCCGCGTTTATTCTCGAGTCTTGCCCCTTTTCTTGGAG
ACAAGCCGCCAAAAGTCAGCAAGTTTACGCAGTGACGACGTCGGTAATAC
CGTAGCACCTCTAGACCCAATCAAATTGGACGTGGATCTCAGGATCGAGG
GTTCGGCGGCCTTTTTTGAGCTTGCACAATCATGGCTGAAGGCTTACCGT
CAATCACTTGCCAGACGAGCCCGGCGATCGAGCCGCAGTACCTGGCGGCA
CCATGAGAAGGAGCAACAGCGATCGCAATGCGACCACAATTGTCAATATC
AAGCATCGAAGGCCGACATTTTGTTCCCTTTCCAGAAGCTACTTGGCGCT
GTGGCAGCAGCTCGGGCGGATAAAACGAATTTGACATTTACGCATGCGGT
CCTCGATAGAAGAGGGCAGGCAAGGGCACGTCAGCCTTTGCAAGCGTTGG
CTGCAAACGTGAGAAGCGACGATTCGTCGAAGATTGCGAGTCAAGTGCCA
GCTGCAAGAAGTCGGAATGACAGCATAACTGACATCCAGAACGAGAACTG
CACTCTAGAAACGCGACGTTTGGCTATGGCCTCTGCCATATACGAAGTCA
CCTACATGGGAGGGAGTATATTGAATTTTGTTTGGGATCTCGTCATGCCA
GAGCTGAACCAGCTCAAGAAAGATGCTCTTGCGCGAAGAAAAGACGATAC
AATCTTTGCAAAAGAGGCAGATTCGTAG

protein sequence of rna6630

>rna6630-protein ID=rna6630-protein|Name=rna6630|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MSGPAPLVTGKKVLVAGGGGFIGSHLARRLKKDGNYVVVADWKKNEFMAE
PEFCDEFFLVDLRELENCIKASKGCHHVYNLAADMGGMGFIESNQSVLMW
NNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEGDAWP
AKPQEVYGLEKLYHEEMALAYSRDFPLVSRIARFHNVYGPFGTWKGGREK
APAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSDTATMP
LNLGTEQMGVRGRNSDNTLIREMLGWEPLISIEDGLRETYFWIKGQIEKE
RAAGVVFDYSSSKVVVQTTESLDALASKQEKSNSIPESDSASNGVQVA

mRNA from alignment at CM002469.1:125041..127203-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6630 ID=rna6630|Name=rna6630|organism=Nannochloropsis gaditana|type=mRNA|length=2163bp|location=Sequence derived from alignment at CM002469.1:125041..127203- (Nannochloropsis gaditana)
ATTCTGCGCCCATAAATATTGTCGCCTCGTGCATTCTAAGCTTGCATGTG
CACGTACGACTCTCTCCGAACACATTTCGCACATGTTGTGGGCACGCACT
GTGTCTACGGCCAGGTATTCCGAACAACTCAGTCGCTAATAACAAAGCAG
CGACGCGTTCGAGGCACTTCCCATGGCCCATCATGATGATGGTTTCCTAC
AACAAAGAAAACAATCAAGCGGGCAGAATTGTTCGCGCGTCGGGCGTCCG
GGTTCTGTTTCTTTGTGTTAGGCCGTCATTCGGTGGTGACAAACGCTTCT
ATGTAATGAGAAGTCAATGTCGCAATGCGTAAATTTTCGTGCGACCTGTG
GTTAAGTGTAGGAACACCTTTTTAAGGGACAGCCGGTATCCGCCCAGATT
CAAATCTAACATCACTGCAACCTCATAGCGACACACAGAAATCAAATTAT
GAGCGGCCCAGCCCCTTTGGTCACTGGCAAGAAAGTCCTCGTAGCAGGGG
GTGGCGGATTTATTGGCTCACACTTGGCCAGGCGCCTCAAGAAGGACGGC
AACTATGTGGTAGTCGCGGATTGGAAGAAGAACGAGTTCATGGCCGAACC
CGAGTTCTGCGATGAATTCTTTTTGGTTGACCTTCGTGAGCTTGAGAACT
GTATCAAGGCCTCCAAAGGTTGCCACCATGTGTACAACCTGGCGGCAGAC
ATGGGCGGAATGGGTTTCATTGAATCGAACCAGTCAGTTCTCATGTGGAA
CAATACCATGGTTTCTTCCAACGTCCTAGAAGCCGCGCGCCGCAACGGTG
CCGAAAGGTACTTCTATTCCTCCACGGCCTGTGTCTACAACGAAGACCTT
CAGCTCGACCCGTCCAATCCGGGTTTGAAGGAAGGTGACGCCTGGCCTGC
CAAGCCCCAAGAGGTGTACGGGCTGGAGAAACTCTACCACGAGGAGATGG
CTTTGGCGTACTCGCGGGACTTCCCTCTCGTCAGCCGCATTGCCCGGTAC
GTTGCCAGATAGTAATGGCGGGATGGGAGAAACTGTGGGTGCTTTGCCTT
TGATTGGTTTCATGTCTTTTTTGACATGCGTTTGTTGCGCCGGCCATCAC
CCACGAGTCGACGTCATTCACGTCATGCCTTTTCCGCGTCTCTTTCCGTC
AGCTTCCACAACGTGTACGGACCGTTTGGCACCTGGAAAGGCGGGCGAGA
GAAAGCGCCAGCTGCTTTCTGCCGCAAGGCCGTTGGCAGCACCGAGCATT
TCGAGGTCTGGGGCGACGGCGAGCAAACCCGCTCGTTCATGTACGTGGAT
GACTGCGTGGAGGGCGTGCTTCGCATCATGATGTCGGACACGGCAACAAT
GCCGTTGAATCTGGGGACCGAACAAATGGTGAGTATGAACAGTTTTGCCG
AGATCGCAATGGGCTTCGAAGGGAAGAAGCTGCCGATCAAGCATATCCCC
GGGCCACAGGGTGTGCGTGGTCGAAACTCTGACAACACACTGATCCGGGA
GATGCTCGGATGGGAGCCCTTGATTTCCATTGAGGACGGACTGCGGGAGA
CTTACTTCTGGATCAAGGGCCAGATCGAGAAGGAGAGGGCCGCGGGAGTG
GTCTTCGACTATTCGTCCTCCAAGGTGGTAGTGCAAACGACAGAGTCTTT
GGATGCGCTCGCTTCAAAGCAGGAGAAATCAAACAGCATTCCTGAGTCTG
ACTCTGCCAGCAATGGTGTCCAGGTCGCCTGAGTCGCCAGAGCAACTCAT
TGACGTGCGGTGGGAAAGGCAAATGAAGCCCGCAAGCAGCTTTTAGATAC
GATGACATGGTAAGATGGTAGCAGGAATGAGAGTGCAAATGACGAAAGCT
TTTATTTAAAAGTGAGCGTAGAGAATAGGAATAATGAGGGAAATAACAAG
AAAAAAACACGAAAGAAAGAAATAGGACTACATATACATATGCTGCCGGG
TGCCAGGAGCTGGAAATCAGGAGGCATCAGTCTCCCACATTTTTCTGAAT
CAACACGTCCACAAGCCCTCACATCGCCTTCTTATCTGAAACGGATGAAC
TGGTTTCTTTCGAAAAAGTCGATTTCCATGTCGACATTGAAAACGTGCAT
CTTCCCTTGGGCCCGCCGAGGCCTGCATAAAGAAGGGAAGCAGGGTGTCG
ATATTCACTTCCG

Coding sequence (CDS) from alignment at CM002469.1:125041..127203-

>rna6630 ID=rna6630|Name=rna6630|organism=Nannochloropsis gaditana|type=CDS|length=3141bp|location=Sequence derived from alignment at CM002469.1:125041..127203- (Nannochloropsis gaditana)
GGTGTGCGTGGTCGAAACTCTGACAACACACTGATCCGGGAGATGCTCGG
ATGGGAGCCCTTGATTTCCATTGAGGACGGACTGCGGGAGACTTACTTCT
GGATCAAGGGCCAGATCGAGAAGGAGAGGGCCGCGGGAGTGGTCTTCGAC
TATTCGTCCTCCAAGGTGGTAGTGCAAACGACAGAGTCTTTGGATGCGCT
CGCTTCAAAGCAGGAGAAATCAAACAGCATTCCTGAGTCTGACTCTGCCA
GCAATGGTGTCCAGGTCGCCTGACTTCCACAACGTGTACGGACCGTTTGG
CACCTGGAAAGGCGGGCGAGAGAAAGCGCCAGCTGCTTTCTGCCGCAAGG
CCGTTGGCAGCACCGAGCATTTCGAGGTCTGGGGCGACGGCGAGCAAACC
CGCTCGTTCATGTACGTGGATGACTGCGTGGAGGGCGTGCTTCGCATCAT
GATGTCGGACACGGCAACAATGCCGTTGAATCTGGGGACCGAACAAATGA
TGAGCGGCCCAGCCCCTTTGGTCACTGGCAAGAAAGTCCTCGTAGCAGGG
GGTGGCGGATTTATTGGCTCACACTTGGCCAGGCGCCTCAAGAAGGACGG
CAACTATGTGGTAGTCGCGGATTGGAAGAAGAACGAGTTCATGGCCGAAC
CCGAGTTCTGCGATGAATTCTTTTTGGTTGACCTTCGTGAGCTTGAGAAC
TGTATCAAGGCCTCCAAAGGTTGCCACCATGTGTACAACCTGGCGGCAGA
CATGGGCGGAATGGGTTTCATTGAATCGAACCAGTCAGTTCTCATGTGGA
ACAATACCATGGTTTCTTCCAACGTCCTAGAAGCCGCGCGCCGCAACGGT
GCCGAAAGGTACTTCTATTCCTCCACGGCCTGTGTCTACAACGAAGACCT
TCAGCTCGACCCGTCCAATCCGGGTTTGAAGGAAGGTGACGCCTGGCCTG
CCAAGCCCCAAGAGGTGTACGGGCTGGAGAAACTCTACCACGAGGAGATG
GCTTTGGCGTACTCGCGGGACTTCCCTCTCGTCAGCCGCATTGCCCGGGT
GTGCGTGGTCGAAACTCTGACAACACACTGATCCGGGAGATGCTCGGATG
GGAGCCCTTGATTTCCATTGAGGACGGACTGCGGGAGACTTACTTCTGGA
TCAAGGGCCAGATCGAGAAGGAGAGGGCCGCGGGAGTGGTCTTCGACTAT
TCGTCCTCCAAGGTGGTAGTGCAAACGACAGAGTCTTTGGATGCGCTCGC
TTCAAAGCAGGAGAAATCAAACAGCATTCCTGAGTCTGACTCTGCCAGCA
ATGGTGTCCAGGTCGCCTGACTTCCACAACGTGTACGGACCGTTTGGCAC
CTGGAAAGGCGGGCGAGAGAAAGCGCCAGCTGCTTTCTGCCGCAAGGCCG
TTGGCAGCACCGAGCATTTCGAGGTCTGGGGCGACGGCGAGCAAACCCGC
TCGTTCATGTACGTGGATGACTGCGTGGAGGGCGTGCTTCGCATCATGAT
GTCGGACACGGCAACAATGCCGTTGAATCTGGGGACCGAACAAATGATGA
GCGGCCCAGCCCCTTTGGTCACTGGCAAGAAAGTCCTCGTAGCAGGGGGT
GGCGGATTTATTGGCTCACACTTGGCCAGGCGCCTCAAGAAGGACGGCAA
CTATGTGGTAGTCGCGGATTGGAAGAAGAACGAGTTCATGGCCGAACCCG
AGTTCTGCGATGAATTCTTTTTGGTTGACCTTCGTGAGCTTGAGAACTGT
ATCAAGGCCTCCAAAGGTTGCCACCATGTGTACAACCTGGCGGCAGACAT
GGGCGGAATGGGTTTCATTGAATCGAACCAGTCAGTTCTCATGTGGAACA
ATACCATGGTTTCTTCCAACGTCCTAGAAGCCGCGCGCCGCAACGGTGCC
GAAAGGTACTTCTATTCCTCCACGGCCTGTGTCTACAACGAAGACCTTCA
GCTCGACCCGTCCAATCCGGGTTTGAAGGAAGGTGACGCCTGGCCTGCCA
AGCCCCAAGAGGTGTACGGGCTGGAGAAACTCTACCACGAGGAGATGGCT
TTGGCGTACTCGCGGGACTTCCCTCTCGTCAGCCGCATTGCCCGGGTGTG
CGTGGTCGAAACTCTGACAACACACTGATCCGGGAGATGCTCGGATGGGA
GCCCTTGATTTCCATTGAGGACGGACTGCGGGAGACTTACTTCTGGATCA
AGGGCCAGATCGAGAAGGAGAGGGCCGCGGGAGTGGTCTTCGACTATTCG
TCCTCCAAGGTGGTAGTGCAAACGACAGAGTCTTTGGATGCGCTCGCTTC
AAAGCAGGAGAAATCAAACAGCATTCCTGAGTCTGACTCTGCCAGCAATG
GTGTCCAGGTCGCCTGACTTCCACAACGTGTACGGACCGTTTGGCACCTG
GAAAGGCGGGCGAGAGAAAGCGCCAGCTGCTTTCTGCCGCAAGGCCGTTG
GCAGCACCGAGCATTTCGAGGTCTGGGGCGACGGCGAGCAAACCCGCTCG
TTCATGTACGTGGATGACTGCGTGGAGGGCGTGCTTCGCATCATGATGTC
GGACACGGCAACAATGCCGTTGAATCTGGGGACCGAACAAATGATGAGCG
GCCCAGCCCCTTTGGTCACTGGCAAGAAAGTCCTCGTAGCAGGGGGTGGC
GGATTTATTGGCTCACACTTGGCCAGGCGCCTCAAGAAGGACGGCAACTA
TGTGGTAGTCGCGGATTGGAAGAAGAACGAGTTCATGGCCGAACCCGAGT
TCTGCGATGAATTCTTTTTGGTTGACCTTCGTGAGCTTGAGAACTGTATC
AAGGCCTCCAAAGGTTGCCACCATGTGTACAACCTGGCGGCAGACATGGG
CGGAATGGGTTTCATTGAATCGAACCAGTCAGTTCTCATGTGGAACAATA
CCATGGTTTCTTCCAACGTCCTAGAAGCCGCGCGCCGCAACGGTGCCGAA
AGGTACTTCTATTCCTCCACGGCCTGTGTCTACAACGAAGACCTTCAGCT
CGACCCGTCCAATCCGGGTTTGAAGGAAGGTGACGCCTGGCCTGCCAAGC
CCCAAGAGGTGTACGGGCTGGAGAAACTCTACCACGAGGAGATGGCTTTG
GCGTACTCGCGGGACTTCCCTCTCGTCAGCCGCATTGCCCG

Synonyms

Publications