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Properties
| Property Name | Value |
|---|
| Product | Rna-dependent RNA polymerase |
| Orig transcript id | gnl|cribi|Naga_100063g28.3901.mrna |
| Orig protein id | gnl|cribi|Naga_100063g28.3901 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:123733..125010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6629 ID=rna6629|Name=rna6629|organism=Nannochloropsis gaditana|type=mRNA|length=5095bp
TATTTTTAGGAGGCTTTCTGAATCTCAACGCTTAAAAAGCCAAAGATACG
CATTTATCAAAGGACCCTCTTAGTCCTGCACACTGTGACGTCGCGAGAAA
ATAGCTTTAATAGCATGGCTCTGTGACTCGTATTGTCCCTCAAGTTCACA
TCACCATCTAATATCGTGCAAAAAATGCTGCTTATTAGGTCCAGGAAAAA
ATCGCATGACATCTCAAGGGCCCCCTTCCCCTTCAGGGAAGTCGGAGGTA
GTCCCACCCGCTCTGACCGTCTCACCATCCAAGATTAGCACACCAGCCAG
TGTGGGAGGTGGTACCGTCTTTAGCCGCTTTATCGGTAAAATGGAACTCA
AGAGTCCGGCATTTGAATTTGCGCGTGTTGGTCCTAAGCAGCATTCAGGG
GGGCGGAGGAACATTGTCAGCATGGCAGGTCAGCATCTTATCGAGGTAGA
GGGTACGGCTGCCTCGCCGCCTCTTCTTAAGGCATGGGGCATCCATCAAT
CTGGATCCATTATCAGAAACAAAAATAGAGGGAAGAAGGGACATGAAAAG
CTTCTTGGCATGACAGAGTCAGGGGAGAGGGTATATGAGATGGAGGACGA
AATTGGTCTGAGTGCGAAAGTGCAGTGGACTGTCGACAAGCCAAAGTCTT
ATTGTATTTCGCCAAGTAGAACGCCGGAAAGTGATCAAGTCCCATTTAAA
TCGGGCAAGTTGCAACAACCCTCGAATGATGAGCGTAAGAAACATCTCCT
TGATTTATCTGCGATCGATGAATGCAGGGATGCGTGGTCAACGAGAGAGT
GTCCAAACCGGTTGACAGCAGAAGAGGAAAGCGAAGCAGGAATTAGTAAT
GACGATGACGATGAGGAGGAGGAGGAGGAGGAAGAAGAAGCAGCAGCAGC
GGGAGAGCAAAAGGCAAAGTTGGAAAAGCACAAGGTAGTGTTCCCTTGGC
AAACAGAATCGGAAAACGCCCGAGGATCTCACAAAGAGTCGCAAACCTTC
AAGCTGTCTTTTGGGTCGGGCACTGCGGGTTTGATTATGGCTTCTACAAA
AGCCGGGAAAGGTGCTTTCCTGGAATCCTTTAAACGCTTGGAGACAAGGC
AAGGCCATCTGCCGACGGCTGCCGAGCTCTGTGGGCAGCTTCGAGTGGGG
GACGTAATTACCCAAATTAACACGACGGACGTCCGGTTCAGCTCTGTGAC
GACAGTACAAGAACTTTTGGACAACGGAGAGCGGCCAGTCACTGTGGTTT
TCCGGCGTTACCCTCAATCGTACTCGTTCCAGGAGGTTGCACAAGACAGC
CGCAAGGTTCCCTTCTATTTCCAATACCTGTTGACGGAGGTAACAGATCC
CCGACATGAGCAAGCGAAAGTCATGCTGCTGATAGAATCTGAGCAATACG
CATCTCAGTACAAAAACATGACGGCAGTTGATCGCGCTTTGGAGGGTCAG
CGCATTTTCGACAAGTTTTTTGACACCCGATCTCATTTTGATTTGAGCGC
TGACATACCATCCCAGCTCCTGAAAAAGCTTAGGGCACAGTGCTATCCCC
CCCCCCCGGCCACTCGTTCAGTACCTGTAAATCCTCTCCTCCGGCCTCCA
CGCTCTTCTGGTCCCATCACCCTCCCAGATGTTGGTCAGGACGAAGACGA
GTGTACGTTGCGGGCCTGTTCGTCCGACATGTTCAACGACGTGCGTCATC
ACATTCAGGAGGACTTGGATCGCGGGAGTTTCCCCCGCTTTCGGGAGAGC
TTGGTTCACTACCGCATGGTTGGATACCTGTCTCAGAGCCCTGAATACGT
TCCGCTCCACCCTTTGGAAGTTTTACAAAACGACGATATGCTCCAATTTT
TCATGCTTTATCTCATGCAAGCCCGCAAACATGCTAGTCTTCGCTGTTAC
CTGGACATGGAACGCTTCGTAAAGCCGCGGGTGGCGGCAGTGGAGGATTT
GTTGAGACGAGGGCTGGTAGCGAGTGAGAAAGCCAAGCAAGCCGTCAAGA
CCCTCATGCAGGCAGTCCTGCGAGTGTTTAGTCTCTACCTATGCAATGGT
TCCTACATGGAAGTGACGCTTCGGCCCCTGTCGCGGCTGAATCAATGGCT
TCGGAGCGTCTTGAACAGTAGGGCAGACATCGCCCGTATCCAACGCAGAG
CATGCAAACTCGCTGCGAGCAAAGCGGCGGAGACGGAAATTCTCGGTAGC
CAGCTTTTGAAGGAAGCGCACAGGAGAAGACCGGGTGCGTTGTTCACATT
TCCTTTAGTAAACGAGCAATGGCAGCAGCAGCAAGCACCGGCGGCGAGGC
CAGAGGTGGAAAGCCCCGCTGACTGGTTGATGGTTTTCGACACCGAGTTC
AGCCCGAACATGGCAATTAAAGTACGAACCACAAAACAGATCCCCGTCTC
CACCTATGCCAAGTCGCTTGCGCACAAAAGCTCTGCCTCTGGCAATATTT
CCGCCTTACGTCCTGGTGCCCCTTCTGCCTTGCCCGCCGGCCTTGAAACC
TTTTTAGTCCCAGAGGAATTCCCCACCAAGCTCGGCACTGTGCCCCCCGA
CCCGGTCCTTTTCAATTTCCTGGTCCCTGGCAAGAACGAGAAAGCCTTCT
ACGGCGCGTGTTTGATCATGTATCGGCCTGCAAACGAGGCCCTTCCAGTG
GACGAGGATGACTTGGACCTGAGCTTGTCGCCCGTGAAGCAGAACATCTC
CAGTCCCTTGATCAATGTGGATTTGACCATCAGCCAATCTCTGGGAGGCA
AGGAAAAAGAGGCTCAAGTACCATCTACGGCACCACAGGCTTCAGGAATG
ACTTGTCCGAATGGTGTACCGACTCACGAAAGCGATGCCCCTTTGCCCTT
CCCTTCTCACGTGACCACGTCGGAGGATTCTTCCATTTCGTCCTCCGAAC
AGAGTACCACCCTCTCCTCCCTTGACCCTGTACAAAATAGCGACCCAGAA
AATTCTCGAAGAGGATCGCAGGCAGACCCTCCCAGAGCCAGGCGGGGCAC
GTTTGTCGCCTACCGCATCGAGCGTGGGGACGAAGCACAGGAGCAAGTCA
AAGCCATGGCAGACAGCATCTTTTCGAGCCCACGACACGATGAGGACGGT
GTAGAGCCGATAGATGGGCGGGAGGGTGATCGGGACGACGATGTCTCTGA
TGTATCTGCTCATGTGGTCGTACCTAAGGGGCCCGTGAAGGAGCAGGCGG
AAGGCGAAGTTGCGCGAGAGGCCTTTTGTCGCCCGGATGCCCCAGAAAAG
TCATCCCCGTCTTCCCAATCGATTTCGCACTTGCCAGCGCCAGAGTGCAT
GGGCCATAGATTGCTGTCTATGGATGTACACATACCAGAGGAACGGACCG
CAGAAGCACAATCACTGTGGGGGCCGGGAGAGGGGTCCAGTTCAGAACCC
GAGCCTCAAATGAAGCATAACGAGGACGGTATTCAAGCACAGACGCTTCA
AGAGGCCGATGTTGACGACGATGATGATAGTTTGATTGCCCTTGTCGAAG
CGGACTTTCAGGACGCCCTATTACAAAGCTATGAAACGTTTGCCAGAGCG
TCTTCCGTGGATCAAGAATCCCTCCCAACCATCGTAGACTCCCCACAACA
ATGGAACAAATTGGACCCGGCAGCTCTTGGTGGGCAATCGCCCTCCTATC
ATCAAACCTATATGTCCTCCCTCGCTACCAACTCGACTCGGCGTGCGTCT
GCAATGGACGAAATTGGATCACATGTTCAGGGGGGACAGCGCCTGCGCCG
GGGTAGTACAAACGCATCTATTGGGACGCGGGACGGTCTTATGGCTGCCA
CAGCCAAGGCTTTACCGGTCACCTTGACATACGCCCCTTACGGATTTTGC
CTCATGTCTCGCTTCTCTTTCATCAACTCGCTCCGCACCCCCCTGACCGC
TTTGTTTGACCCCAAACAAACCCGGAATCGGTCCGCCCTGCGTGTCATCC
AAACCCTCCTTGCCGATCATCCCCCTGTTCGGATTCCCCTCGATGCGGCC
GACCGGGATGAATCCTTGTTCTTGCCCTTCTCTACCCCTCTCCCATCTTC
ACCGCACGAGCTGGCATCTGGCCTCTCTCCATCGGGACTTCTATCACCCG
CTTTAACCCAGCCAGGCTCTGCTTCGGCGTCTACCAACGGTCATGGTCCA
ACCTCAGCGACAGCTCATCAGCATCAGTTGCCCACTCAAATCGACTTTGA
AATTGACCTTCTTTTCCAATGCCTAAGCTCTCGCAACCTCATCCTCGTCT
TCCTCGCCCTTCTTTTGGAGTGCAAGGTCTTGCTCATATCTGAGCGGCTA
ACTCTCTTAACGGTCGCTGGGGAGGGTCTTCGGCTTCTCCTCCATCCTCT
AAAATGGTGCCATGTCTACGTGCCGTTGGTACCGGAAGTCATGATTGATC
ACGTCATTGGCTGCCCTACCCCCTTCCTTATGGGGCTGCACCGCAAAACC
TTTTTGCTGCGGCGGAATGATTTCCCCATGGAGATCATGCGAGTCGACCT
GGACAACGACTACGTCGAAGTGCCCGCCAAGGATCTGAACAGAAAAAATG
TCCCATTTGCCGGTCCCTTGGCACGAAAATTCGAGCGTATGGCCTCTCCT
GCCATGGCTTACAGTGACTCGTACAGATGGCCAGCGACAACCCAATTACA
TGCGAAGACGACTACAGGAATGTTGACCACCACCAACTTCAGCACCACGG
GTATGGTTAGCCCACCAGCCTCCGCGGGCAACGAGAATATGTCCGCATTG
CCATCACACTCTCCACAGAAACGGGACGTGCGGGCAGCCCTGCATGTGCT
ACGGGAGTTTGTTCAAGGGCTTTTGATGGGCATTGAAGATTCCTGCTACC
GCCTGTGCACGGAGACCGAATTGACAATCTTGTTTGACGAGACCTTGTTT
GGGCATATAAATGGACCTGCAGAGCTGCTCTTGATCACACCAAATGACCC
GGAGACGGATGCCTTGCCTCACTCCCCACATTTGCCTGTAGCACCTGCAC
AGACGGGGGCTGCGACAGAGAGTTTCATTTTACGCTTTTCCAGGACTCAA
GCTTTTTCAAACGTTTTAATGAAGAGCTTACAACGGACCGTTTGA back to topprotein sequence of rna6629 >rna6629-protein ID=rna6629-protein|Name=rna6629|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MDGDTYFVCMHEKIVEFACPIEDNGAPEKDTNICTKERHGKSKSDNEIFL
SNQPDIPASKTIPPCPGAELLTQIGPFRLDPETVGHKIDAKVMRRCLESC
VAQAKASQILASASDWWIRHADIRGALSRDCRILGEIAVGAVNSAKTGEL
WSLPRVLRPQHYPPYLNRYSAVDATSPSRPISADSFLGRVYSRVLPLFLE
TSRQKSASLRSDDVGNTVAPLDPIKLDVDLRIEGSAAFFELAQSWLKAYR
QSLARRARRSSRSTWRHHEKEQQRSQCDHNCQYQASKADILFPFQKLLGA
VAAARADKTNLTFTHAVLDRRGQARARQPLQALAANVRSDDSSKIASQVP
AARSRNDSITDIQNENCTLETRRLAMASAIYEVTYMGGSILNFVWDLVMP
ELNQLKKDALARRKDDTIFAKEADS back to topmRNA from alignment at CM002469.1:123733..125010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6629 ID=rna6629|Name=rna6629|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at CM002469.1:123733..125010+ (Nannochloropsis gaditana)
ATGGACGGGGATACTTATTTCGTCTGCATGCACGAAAAGATTGTAGAATT
TGCATGTCCCATCGAGGATAATGGTGCTCCTGAGAAGGATACCAATATTT
GCACCAAAGAACGGCATGGCAAAAGCAAGAGCGACAACGAGATCTTTCTT
TCAAATCAGCCGGATATTCCTGCGTCCAAAACaattcctccttgtcctgg
tGCTGAGCTTCTGACGCAAATCGGCCCCTTCCGGCTAGATCCTGAAACGG
TTGGCCATAAGATAGACGCCAAGGTGATGCGAAGATGCTTGGAGAGCTGC
GTAGCGCAAGCCAAAGCAAGCCAAATACTTGCTAGCGCCTCTGATTGGTG
GATAAGACATGCCGATATTCGTGGCGCCCTTTCAAGAGATTGTCGTATTT
TAGGAGAAATCGCCGTGGGCGCCGTGAACAGTGCGAAAACTGGTGAATTG
TGGTCCTTGCCTAGGGTTCTAAGGCCTCAACACTATCCTCCCTACTTAAA
TCGCTACTCTGCGGTAGATGCAACGAGCCCATCGCGTCCAATTTCTGCTG
ATAGCTTTCTGGGCCGCGTTTATTCTCGAGTCTTGCCCCTTTTCTTGGAG
ACAAGCCGCCAAAAGTCAGCAAGTTTACGCAGTGACGACGTCGGTAATAC
CGTAGCACCTCTAGACCCAATCAAATTGGACGTGGATCTCAGGATCGAGG
GTTCGGCGGCCTTTTTTGAGCTTGCACAATCATGGCTGAAGGCTTACCGT
CAATCACTTGCCAGACGAGCCCGGCGATCGAGCCGCAGTACCTGGCGGCA
CCATGAGAAGGAGCAACAGCGATCGCAATGCGACCACAATTGTCAATATC
AAGCATCGAAGGCCGACATTTTGTTCCCTTTCCAGAAGCTACTTGGCGCT
GTGGCAGCAGCTCGGGCGGATAAAACGAATTTGACATTTACGCATGCGGT
CCTCGATAGAAGAGGGCAGGCAAGGGCACGTCAGCCTTTGCAAGCGTTGG
CTGCAAACGTGAGAAGCGACGATTCGTCGAAGATTGCGAGTCAAGTGCCA
GCTGCAAGAAGTCGGAATGACAGCATAACTGACATCCAGAACGAGAACTG
CACTCTAGAAACGCGACGTTTGGCTATGGCCTCTGCCATATACGAAGTCA
CCTACATGGGAGGGAGTATATTGAATTTTGTTTGGGATCTCGTCATGCCA
GAGCTGAACCAGCTCAAGAAAGATGCTCTTGCGCGAAGAAAAGACGATAC
AATCTTTGCAAAAGAGGCAGATTCGTAG back to topCoding sequence (CDS) from alignment at CM002469.1:123733..125010+ >rna6629 ID=rna6629|Name=rna6629|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002469.1:123733..125010+ (Nannochloropsis gaditana)
ATGGACGGGGATACTTATTTCGTCTGCATGCACGAAAAGATTGTAGAATT
TGCATGTCCCATCGAGGATAATGGTGCTCCTGAGAAGGATACCAATATTT
GCACCAAAGAACGGCATGGCAAAAGCAAGAGCGACAACGAGATCTTTCTT
TCAAATCAGCCGGATATTCCTGCGTCCAAAACaattcctccttgtcctgg
tGCTGAGCTTCTGACGCAAATCGGCCCCTTCCGGCTAGATCCTGAAACGG
TTGGCCATAAGATAGACGCCAAGGTGATGCGAAGATGCTTGGAGAGCTGC
GTAGCGCAAGCCAAAGCAAGCCAAATACTTGCTAGCGCCTCTGATTGGTG
GATAAGACATGCCGATATTCGTGGCGCCCTTTCAAGAGATTGTCGTATTT
TAGGAGAAATCGCCGTGGGCGCCGTGAACAGTGCGAAAACTGGTGAATTG
TGGTCCTTGCCTAGGGTTCTAAGGCCTCAACACTATCCTCCCTACTTAAA
TCGCTACTCTGCGGTAGATGCAACGAGCCCATCGCGTCCAATTTCTGCTG
ATAGCTTTCTGGGCCGCGTTTATTCTCGAGTCTTGCCCCTTTTCTTGGAG
ACAAGCCGCCAAAAGTCAGCAAGTTTACGCAGTGACGACGTCGGTAATAC
CGTAGCACCTCTAGACCCAATCAAATTGGACGTGGATCTCAGGATCGAGG
GTTCGGCGGCCTTTTTTGAGCTTGCACAATCATGGCTGAAGGCTTACCGT
CAATCACTTGCCAGACGAGCCCGGCGATCGAGCCGCAGTACCTGGCGGCA
CCATGAGAAGGAGCAACAGCGATCGCAATGCGACCACAATTGTCAATATC
AAGCATCGAAGGCCGACATTTTGTTCCCTTTCCAGAAGCTACTTGGCGCT
GTGGCAGCAGCTCGGGCGGATAAAACGAATTTGACATTTACGCATGCGGT
CCTCGATAGAAGAGGGCAGGCAAGGGCACGTCAGCCTTTGCAAGCGTTGG
CTGCAAACGTGAGAAGCGACGATTCGTCGAAGATTGCGAGTCAAGTGCCA
GCTGCAAGAAGTCGGAATGACAGCATAACTGACATCCAGAACGAGAACTG
CACTCTAGAAACGCGACGTTTGGCTATGGCCTCTGCCATATACGAAGTCA
CCTACATGGGAGGGAGTATATTGAATTTTGTTTGGGATCTCGTCATGCCA
GAGCTGAACCAGCTCAAGAAAGATGCTCTTGCGCGAAGAAAAGACGATAC
AATCTTTGCAAAAGAGGCAGATTCGTAG back to top
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