rna6626, rna6626 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6626
Unique Name	rna6626
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1440
Alignment location	CM002469.1:108626..110491 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100063g14.3890.mrna
Orig protein id	gnl\|cribi\|Naga_100063g14.3890
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:108626..110491 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g14	gene6404	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6626	rna6626-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24065.1	cds6610	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:108626..110491-
coding sequence from alignment at CM002469.1:108626..110491-

mRNA sequence

>rna6626 ID=rna6626|Name=rna6626|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
GAAGTTCTTCCCTGGCCAAGGGTAGCTTGGATGGTTAAGTAGAGTGGTCA
GGACTGCACGGCTTCCGGTAGTCAAAACAATCATCCACTTGCACACAAGT
TGGTGCATCTGAAAGATGTGCATCGGGTCTGTTTCGGCCGCTATTCCGCC
GGTCACTGCTGCTTCTGCAGAGGCGGTGGCCCAACATTCGTCGATGCCTG
TACCGGAATCTGATGCGCAAGATGGAGACGCATCGATGGATATAGTCGAC
CGCTTAAATGTACAGGCGAAACATTTAGCGGCGAAGACAATCGGTGTACC
TGGTGACGAGCATTACGCATGCTTACAGATGGTCAAAGAGGGCGCCACGG
TTTTCAAGCACCGCATTTGGCCTCTCATGTACATATATTGGGCATACACG
GTTTACGGCATCTTGACGGGGCCCTCCCTTGCTTTTGCATTGGGTGCTTT
CGTGCTGACTTACCTGTACATCGACCTTTATGGCGCCGTCTTACACATTG
TTCTTGACAACCCGAATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTGC
CTGGAGTTCCAATTCCATCACATCATTCCCCACGAAATTACGGTCCGAGA
TTTCCGACACATCGCTGCGGATCTGAACGGCATCATCGGCTTAGAATACG
GAGTGAATCTCATTCTATTCAATGGTCTCACAGACCCGGCTTACCGGTGC
GTTGCCTGCTGCGCGGTCCTGAACGCTTATTTGGGTCAACTCGCCCATCG
ACAGGCACACATGCGCCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTCC
AAGGCTTGGGGCTGATGGTGACGCCGGACACGCACCGACGACACCACAAG
ACATACGACCAAGGATTTCCCATTCTGAGCGGTTGGTCGGACGCCCCGGT
AACGTTTTTGTATCGATACGTGGTGCCATCTCAATGGGTGTGGCTGGCCA
TGTTCGTCCTCCTTACTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTAT
CTGCCTCTCGCTGCATGGGCGCTGGAAGAGGGAGGTTGTGAGGGTGCAAT
AAGGGGGTGGGCGAAATCGTCGATGTTGTAAGGAGGAATGGAAGAGGTAG
AAAAGTGAGTTCCTGGATGGCCAGGGGCAAGCCAGAAAGCACGAGTGATA
GCTTTGATACGTGAAAATTAGTCCAACGGTATACATCCCGGGCATTGGAC
TACGTGGTTAAGGCGATGTGAGCCAATTGTAAGAGGTTTGTGTACGATGG
GGGGGGGCTGGGCAAATGGCGTTTTTTAATCTGACTGGATGTCGGCAGTG
GTCATAAAATTGTGTATCACGAAGTTCACGAGATAAAGGCAGCCCGAATC
TAGGAAAAGCAATGAATGTTGGGAATCTCGAAGGACTTTCGCCGAAATTC
GGCAAGAGGTATTGGCAGATTTCTCCACGCTCGGATTCCC

protein sequence of rna6626

>rna6626-protein ID=rna6626-protein|Name=rna6626|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTG
LFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVER
TDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVT
QVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTL
RDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGD
VIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFK
AVEEGKELLRNFQNR

mRNA from alignment at CM002469.1:108626..110491-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6626 ID=rna6626|Name=rna6626|organism=Nannochloropsis gaditana|type=mRNA|length=1866bp|location=Sequence derived from alignment at CM002469.1:108626..110491- (Nannochloropsis gaditana)
GGGATGGCACCAAAGCACTACGGTCATAAAAAGCGCGCCTCTGTCCGCTT
AATCGCTCCCGGGTCGCCAATTCCTGTCCCACGACCTTGGGAAAAGCCAT
GAAAGATGGGGCCCATGGGACACGGTCGTAAAACGCGTGGGGTTGTACCG
TGTTATTTGTATTAATAGGCTTAATCCTCGTAAATTCGTTGAGGGGAGGA
GAGAGGGTCCCCCTGCTCCAAAAAACTCGTTTGCTCTGCTTCAAATACGC
CAAGGCAGGATGGCTTGCCTGCCCACCCTACCCTCCTGAACACGCTACTT
TCTGCCATGTTTCTGGCACTGGATTGACACACGTACATTGATGTATCACT
GGCACTGACCAATTTTTTCCACAGCTCGCGTGCGGCGCCCTAACCGATCG
ACATATGGGCTTCTCGAGTCACGCCGTCGTGCAGCAAGTGCTGGCAACCA
CATTGCTGCTTTTCATCACACTTGCGTCCACGAAAGACATTGAAATTGAC
AATGCGGGCGGAGGGTCTACCGCTCGCAAGGCAGGCGGCGCTAAGAAGAC
TGGTTTGTTTCAGAGGATCTCCCGGGCATTGGACACAGGGTCCGCCATGG
ACGATGACGGCACGCCCTTCACGGATGAGATGTGGGAGGCAACAAGGGAC
GAAGGAGAGCCAGTCGACCCGGCTTTGATGGATTTCAAGAACCCGGTGGA
GAGGACGGATGCGTGGAAATTCGACGACGGCTTGAAAATGCTGCAAACCT
CTATGGATGGGGATCTGACGAACCCGGTCCGAGACCTCGTGAACGGCGCC
AAAGACTTACACGCTGCCTGGGCGGTCCCCCACGTCTTCCGTGCGCTTGT
CACGCAGGTGCCACTTTTCCAGGCCTTCAAGCCCATCCAAGAGATCATAA
AAGATAAATCGCGCGACGAGGACTACTCGCCTGAGGACGGTGTGAAGGCC
GCAGGGATCTTCAAAAGTTTCATGCTGAGGTCGATGGACGTCCTGGATAC
GCTCCGGGACCCGGAAAAGTTTGCGGCTAAATTACAAGGGTACGCCGAGA
GCAAAGACAAGACTTTGTTGGACCTGTTTGCGAAAGCCTCCCGGGGGGAG
GATGAGAACCACAAGGAGATCAACAATTTTTTCATGAGGCAAGAGCTAGG
GGACGGTAAGCCGGGAGGACAAAGGTCATGACGGGGAGAAAGAAGGAGAA
ATGGCCTCGGTGCGAGAGGAGAATGTGTGTGTGTGTATGCGGGCAGGTTT
TGAACGACAAGCAATAGTCAGTCCGGAGCTTGCACATTGTAGTTCATGGC
CTTACCCGAACTCGTAACCGCCGGCCACACAGTAATAGATTTGGATTTCT
TGGGCTTTAGTGGCGTGGAGCCTTCCTTCTTGCCCGGTTTCCGTAACCAG
GTAGCGTCGATCCCACGTCCGATCCCTACTATCCTCCCACCTATTCACCT
CGCCTGGCACTTTTCCCTCCTCCCTTCCCCTTCCAGTCACAAAGGCTCAT
AATATCCTGCCACTTTTCCCATTTCTTTTCTACCCGTTGGATTTTCCCGC
CTTTTTCTTCCTTTCTACTGCCCGTCCCCTTTGCCAGGTCAAGGAGTTCG
CGCCAAATATGTATAACGCCCTCATGACCGACCCTAACATGAAGAAGTAC
ATGGAGGACCCTTTCAAAGCCGTAGAGGAAGGGAAGGAGCTGTTGCGAAA
CTTCCAAAACCGCTGACAACAGGCATGGACGAGGGAGGCGCGGAGGTACC
CAGGCGGAAATAGAACGTGAGACAAGCAGAAAGTAACCATGGTAAAGAAC
AATAGGTGTGAGAGGGAATCCGAGCGTGGAGAAATCTGCCAATACCTCTT
GCCGAATTTCGGCGAA

Coding sequence (CDS) from alignment at CM002469.1:108626..110491-

>rna6626 ID=rna6626|Name=rna6626|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at CM002469.1:108626..110491- (Nannochloropsis gaditana)
GTCAAGGAGTTCGCGCCAAATATGTATAACGCCCTCATGACCGACCCTAA
CATGAAGAAGTACATGGAGGACCCTTTCAAAGCCGTAGAGGAAGGGAAGG
AGCTGTTGCGAAACTTCCAAAACCGCTGATAATAGATTTGGATTTCTTGG
GCTTTAGTGGCGTGGAGCCTTCCTTCTTGCCCGGTTTCCGTAACCAGATG
GGCTTCTCGAGTCACGCCGTCGTGCAGCAAGTGCTGGCAACCACATTGCT
GCTTTTCATCACACTTGCGTCCACGAAAGACATTGAAATTGACAATGCGG
GCGGAGGGTCTACCGCTCGCAAGGCAGGCGGCGCTAAGAAGACTGGTTTG
TTTCAGAGGATCTCCCGGGCATTGGACACAGGGTCCGCCATGGACGATGA
CGGCACGCCCTTCACGGATGAGATGTGGGAGGCAACAAGGGACGAAGGAG
AGCCAGTCGACCCGGCTTTGATGGATTTCAAGAACCCGGTGGAGAGGACG
GATGCGTGGAAATTCGACGACGGCTTGAAAATGCTGCAAACCTCTATGGA
TGGGGATCTGACGAACCCGGTCCGAGACCTCGTGAACGGCGCCAAAGACT
TACACGCTGCCTGGGCGGTCCCCCACGTCTTCCGTGCGCTTGTCACGCAG
GTGCCACTTTTCCAGGCCTTCAAGCCCATCCAAGAGATCATAAAAGATAA
ATCGCGCGACGAGGACTACTCGCCTGAGGACGGTGTGAAGGCCGCAGGGA
TCTTCAAAAGTTTCATGCTGAGGTCGATGGACGTCCTGGATACGCTCCGG
GACCCGGAAAAGTTTGCGGCTAAATTACAAGGGTACGCCGAGAGCAAAGA
CAAGACTTTGTTGGACCTGTTTGCGAAAGCCTCCCGGGGGGAGGATGAGA
ACCACAAGGAGATCAACAATTTTTTCATGAGGCAAGAGCTAGGGGACGGT
CAAGGAGTTCGCGCCAAATATGTATAACGCCCTCATGACCGACCCTAACA
TGAAGAAGTACATGGAGGACCCTTTCAAAGCCGTAGAGGAAGGGAAGGAG
CTGTTGCGAAACTTCCAAAACCGCTGATAATAGATTTGGATTTCTTGGGC
TTTAGTGGCGTGGAGCCTTCCTTCTTGCCCGGTTTCCGTAACCAGATGGG
CTTCTCGAGTCACGCCGTCGTGCAGCAAGTGCTGGCAACCACATTGCTGC
TTTTCATCACACTTGCGTCCACGAAAGACATTGAAATTGACAATGCGGGC
GGAGGGTCTACCGCTCGCAAGGCAGGCGGCGCTAAGAAGACTGGTTTGTT
TCAGAGGATCTCCCGGGCATTGGACACAGGGTCCGCCATGGACGATGACG
GCACGCCCTTCACGGATGAGATGTGGGAGGCAACAAGGGACGAAGGAGAG
CCAGTCGACCCGGCTTTGATGGATTTCAAGAACCCGGTGGAGAGGACGGA
TGCGTGGAAATTCGACGACGGCTTGAAAATGCTGCAAACCTCTATGGATG
GGGATCTGACGAACCCGGTCCGAGACCTCGTGAACGGCGCCAAAGACTTA
CACGCTGCCTGGGCGGTCCCCCACGTCTTCCGTGCGCTTGTCACGCAGGT
GCCACTTTTCCAGGCCTTCAAGCCCATCCAAGAGATCATAAAAGATAAAT
CGCGCGACGAGGACTACTCGCCTGAGGACGGTGTGAAGGCCGCAGGGATC
TTCAAAAGTTTCATGCTGAGGTCGATGGACGTCCTGGATACGCTCCGGGA
CCCGGAAAAGTTTGCGGCTAAATTACAAGGGTACGCCGAGAGCAAAGACA
AGACTTTGTTGGACCTGTTTGCGAAAGCCTCCCGGGGGGAGGATGAGAAC
CACAAGGAGATCAACAATTTTTTCATGAGGCAAGAGCTAGGGGACGGTCA
AGGAGTTCGCGCCAAATATGTATAACGCCCTCATGACCGACCCTAACATG
AAGAAGTACATGGAGGACCCTTTCAAAGCCGTAGAGGAAGGGAAGGAGCT
GTTGCGAAACTTCCAAAACCGCTGATAATAGATTTGGATTTCTTGGGCTT
TAGTGGCGTGGAGCCTTCCTTCTTGCCCGGTTTCCGTAACCAGATGGGCT
TCTCGAGTCACGCCGTCGTGCAGCAAGTGCTGGCAACCACATTGCTGCTT
TTCATCACACTTGCGTCCACGAAAGACATTGAAATTGACAATGCGGGCGG
AGGGTCTACCGCTCGCAAGGCAGGCGGCGCTAAGAAGACTGGTTTGTTTC
AGAGGATCTCCCGGGCATTGGACACAGGGTCCGCCATGGACGATGACGGC
ACGCCCTTCACGGATGAGATGTGGGAGGCAACAAGGGACGAAGGAGAGCC
AGTCGACCCGGCTTTGATGGATTTCAAGAACCCGGTGGAGAGGACGGATG
CGTGGAAATTCGACGACGGCTTGAAAATGCTGCAAACCTCTATGGATGGG
GATCTGACGAACCCGGTCCGAGACCTCGTGAACGGCGCCAAAGACTTACA
CGCTGCCTGGGCGGTCCCCCACGTCTTCCGTGCGCTTGTCACGCAGGTGC
CACTTTTCCAGGCCTTCAAGCCCATCCAAGAGATCATAAAAGATAAATCG
CGCGACGAGGACTACTCGCCTGAGGACGGTGTGAAGGCCGCAGGGATCTT
CAAAAGTTTCATGCTGAGGTCGATGGACGTCCTGGATACGCTCCGGGACC
CGGAAAAGTTTGCGGCTAAATTACAAGGGTACGCCGAGAGCAAAGACAAG
ACTTTGTTGGACCTGTTTGCGAAAGCCTCCCGGGGGGAGGATGAGAACCA
CAAGGAGATCAACAATTTTTTCATGAGGCAAGAGCTAGGGGACG

Synonyms

Publications