EWM24065.1, cds6610 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|585105357|gb|EWM24065.1| (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana]) HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR 315
MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR
Sbjct: 1 MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR 315
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|553187652|ref|XP_005854650.1| (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >gi|422294407|gb|EKU21707.1| hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 114.005 bits (284), Expect = 6.221e-27 Identity = 63/174 (36.21%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 128 LVNGAK--DLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMT-DPNMKKYMEDP 298
L N A +L A W+ P VFR L Q P +AFKP++ + E +P+DGV A FK+ ML+ + ++ +RDPE A + Y+ +D + L A+ GE E E+ + + +ELG +IDL+ +GF G EPS L R V+ P +++++ + DP +KYME P
Sbjct: 2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSK----EALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAP 171
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|585099457|gb|EWM20107.1| (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana]) HSP 1 Score: 73.9442 bits (180), Expect = 7.039e-13 Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 210 LQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNF 312
+ YA S D L + +G+ ++ F + +E+GD+IDL+ GF GV P L + V+E P ++N++++DP K+Y+EDP AV+E ++ +++
Sbjct: 1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISSVREQEPLIWNSVLSDPVAKRYLEDPMLAVKEALDVAKDY 103 The following BLAST results are available for this feature:
BLAST of EWM24065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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