EWM24065.1, cds6610 (CDS) Nannochloropsis gaditana

Overview
NameEWM24065.1
Unique Namecds6610
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:109337..110087 -
Alignment locationCM002469.1:109092..109159 -
Alignment locationCM002469.1:108776..108904 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24065.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100063g14.3890.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:109337..110087 -
CM002469.1supercontigCM002469.1:109092..109159 -
CM002469.1supercontigCM002469.1:108776..108904 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|585105357|gb|EWM24065.1| (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR 315
            MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR
Sbjct:    1 MGFSSHAVVQQVLATTLLLFITLASTKDIEIDNAGGGSTARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNFQNR 315          
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|553187652|ref|XP_005854650.1| (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >gi|422294407|gb|EKU21707.1| hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.005 bits (284), Expect = 6.221e-27
Identity = 63/174 (36.21%), Postives = 97/174 (55.75%), Query Frame = 0
Query:  128 LVNGAK--DLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMT-DPNMKKYMEDP 298
            L N A   +L A W+ P VFR L  Q P  +AFKP++ +       E  +P+DGV A   FK+ ML+ +  ++ +RDPE  A  +  Y+  +D   + L A+   GE E   E+  + + +ELG +IDL+ +GF G EPS L   R  V+   P +++++ + DP  +KYME P
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSK----EALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAP 171          
BLAST of EWM24065.1 vs. NCBI_GenBank
Match: gi|585099457|gb|EWM20107.1| (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 7.039e-13
Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  210 LQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNMKKYMEDPFKAVEEGKELLRNF 312
            +  YA S D     L  +  +G+     ++  F + +E+GD+IDL+  GF GV P  L    + V+E  P ++N++++DP  K+Y+EDP  AV+E  ++ +++
Sbjct:    1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISSVREQEPLIWNSVLSDPVAKRYLEDPMLAVKEALDVAKDY 103          
The following BLAST results are available for this feature:
BLAST of EWM24065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105357|gb|EWM24065.1|0.000e+0100.00hypothetical protein Naga_100063g14 [Nannochlorops... [more]
gi|553187652|ref|XP_005854650.1|6.221e-2736.21hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
gi|585099457|gb|EWM20107.1|7.039e-1332.04hypothetical protein Naga_101770g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6626rna6626Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications