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Properties
| Property Name | Value |
|---|
| Product | Kua-ubiquitin conjugating enzyme hybrid, localization |
| Orig transcript id | gnl|cribi|Naga_100063g13.3899.mrna |
| Orig protein id | gnl|cribi|Naga_100063g13.3899 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:106455..108678 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6624 ID=rna6624|Name=rna6624|organism=Nannochloropsis gaditana|type=mRNA|length=2530bp
ACAGGTGCTGGTTCCATAACTGGTCCCCAAAATGCTGTGACACGACCCCG
AGACCTTCATAATCATACACTTCATGTAAATAGACAGGACATGCGGTCTT
CCAAAATACGCAAGGTAGCAGAGGTTGAGGTTGCATTCCCTCTTTCATCT
CCTCCTCCTTCATCCGCCTCTGCCTCCGGTACACCAAGCAGTATCTTGAC
AACCATACGTGACATTGAGCGCGGCATACTGGATGGACAGGACCTGCAGC
ACTTAAATGGACTTACATTACTTCTTGTACATGTCCGGGCCTTACTTCAA
TCCATGATTGGAGCGCTGGAGGAGGAGAGTGGTGCAGAAAAAGTGCTGAA
CAACAAGGACAGGGAGGTTGCCGGCTTACAGTCTATGCATGCTTTGCGGC
GCATCTTCACGGCGTTAGTCAATCGGGGAGACGTGCGAAAACCAATAACC
AAAGATTCCACTACTGCTTCCAGTCCTGTAAATGCCATTACCCCGGATAC
GTCCCTCGCAAAAACTTCGGGTGCTCTGGGGAAGGGCGAAGTTTTGTCTG
GCGCAAGTAGAGCGCAAGGTCGCAAGCGTGCAGGCCACGTGGAAATTCAG
GAGCATCAGAATGAGACTCATGCCGTAAATGCAGAGGAATCGCTGCGTAT
ATTTCGCCAATGGGCGTACCGCCAGTACGCCACTTTCCTTTCTCTTCTAC
TCGACCTAGTGGAGGGCAAAGCTCACGACATAGCCCACCACTCTTCCTCC
TCATCCTCTTCCTCTTCTTTAACATCCATAAAACCTGCTTTCTCTATTAA
GGTGCGCATTCGCGCCGCAGCCCTTCGCACCATCATGGAGATGGTGAAAG
TGGAAAGCGTGGTTTTGCACAAGAACTACCGTTCCTTCGGGCACGAGCTG
TTCTACCGGCTTCTTATGGGACTACTCAGCAGCAGTACCAACAGTATCAG
CTCCCGCCACAGCCATAAGTATGGCAACTCTGACAAAGAGGAGGAATCTA
GAAAAGTAGTCGATGCGCGGGACCTGGCGGACCTGCTGGAGGTTCTCCGT
GTTGACTACATAGAGCCCTACTGTGACGTTCGCTATTGGCTCCTAAAAGG
GCTGGGAATCTGGGCGAGAAAGGAGCTGAAAGAGGGACGATGTAGGACAT
CCACGGAACAAGAAGAGGCATCAAGGACGGAGACGGCATTGAAGCTGTTG
ATGATGGTGCGATTGAGCGAGGAGGAATCGGCGATGCGCTTACTCTGGGT
GTCGCTTCAGGATGAAAAGGGGGATGGGGCATTGCTGCCGAACCAGGGAG
GGAAGGAGGAAGAGGAAGAGGAGGAAGAGACCGGGTGGGATTGGTCGGGA
GACGAGGGGATGGGCCATGAGGAGGACGAGGAGGCACTCGGGAAAGACGG
CGCCAGGGAGCGCGTTCCCAACGTGGCGAGTCTCTCGGCGCATCGAAAAG
CCCTGGAAGCTGCTTGGCTTGGATGCCTGCGACTCCCTGATCTCCCTCCC
GCCCTTTATCGGTCCATCACCCAGCATGTGGCCCGGCACGTCCTTGAACA
CCTGCCACGGCCTTTGCTTCTCGCGGATTTTTTCACCGCCGCCTACGCGC
AAGGGGGTTTAACGGCCGTCATTGCCCTGGAAGGCCTCTTCGTTCTGATG
CAGGCGCACAATTTGGAATACCCGAGCTTCTATTGCTCTCTCTACCGGCT
CCTGAGCCCCGGGCCTCAAGTCTTGTACTCCCGGCACCGGGCACGGTTCT
TCCGCCTCCTCCGTCTCTGCCTCATCTCCACCCTGGTCCCCGCCCACGTG
GTCGCTGCTTTCCTGAAGCGCTTGGGCCGACTTTCCCTGCGTGCGCCCGC
CCCGTCCGTCATTTTTTTCCTCTCTCTCCTTACGGTAGTCCTTCGCGCCC
ACCCAAGCTGCCTTGCCCTCTTGCATCGGTCCCGAGCGCTGAAGGGGATC
GACGAAGCTCAGGCCGTAGATCGATTCGACCCGGGCGTCGAGGATCCGGC
TGCTGCTTTCCAAATGACGGAGTTTGCCGCGGGAAAACACGAGGGAGAGG
ACCAAGACGGGAATAACGATGCTCAGATGGGGGGGATTCAGACATCCCTG
TGGGAAGTGGCGGCCTTGCAGATGCATTATCACCACGCCGTTGCTTCGCT
TGCGAAAGGACTGGAGATTACCACCCCAGAGGATCCAAAAAAGCCCCTTT
CAATGAACATGGAGGCGATGGCTTCGTATACGTACACAGAGCTTTTCACC
CTGGAGGGGAAGTATTGGAAGAGGGGGAAGAAGGAGGAGATGGCGGGCAG
GAAACGGCGAAGGAAAGGTCTGGAGGGAGGTCAAGAGGAAGGTGTGGCCC
TTGCCCATGAAAGAAAGCCAAGGTCAGGGAAGCTTTTTCAAGCAGGAGAC
GTTTTCGACGGTCTCTTTGTCTTGCCCTCCCTGTCCGCCGTGAGAAAAGA
GTAAGAAGGGCAACGTGATACGGAGGACAAGAGTGGGAAACGAAGCACCG
AGAAAATAATATGGGCGCAGAATTGCCCCT back to topprotein sequence of rna6624 >rna6624-protein ID=rna6624-protein|Name=rna6624|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQ
AKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGIL
TGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQF
HHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCA
VLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQG
FPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAA
WALEEGGCEGAIRGWAKSSML back to topmRNA from alignment at CM002469.1:106455..108678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6624 ID=rna6624|Name=rna6624|organism=Nannochloropsis gaditana|type=mRNA|length=2224bp|location=Sequence derived from alignment at CM002469.1:106455..108678+ (Nannochloropsis gaditana)
AAAGCCCCATAGCCGCATGCAGGCCAAAATGCTTTACGCACCTACACAGA
AGTTCTTCCCTGGCCAAGGGTAGCTTGGATGGTTAAGTAGAGGTAAATGG
TACAGTTTTCTTTCCCAACGATTCACGATTTTCTTGGCGGTTGCCTGCAT
GTTATGCTTGACACCACGCATGTCGCTTCCTACTGTCGGTCATGAAACAT
GCGCAGAGATCAGGCTCCTTCGCTGCACACAGTGGCAAAATTATGCAGAA
AATCTTCCAAATTAACCCTCACATCCATTTTTAATCATAAATTATACATT
TTGGGGGGCATTTCTTTTCAATAGTGGTCAGGACTGCACGGCTTCCGGTA
GTCAAAACAATCATCCACTTGCACACAAGTTGGTGCATCTGAAAGATGTG
CATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTGCAG
AGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATGCGCAA
GATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAGGCGAA
ACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTACGCAT
GCTTACAGATGGTCAAAGAGGGCGCCACGGTAGGGTCTAGGACGGGGAAT
GAGGGGCAAAGCGCGAAGGAACAATAAAAAAATTGTCACTCTTGTCTATG
TCCAAATGAATCTTGTGAGATGTATGCCCTGAAGGCATCAACTCCGACTC
TCTCCTCTTATTGTCCCTTCCACTATCAATTACAAAAGGTTTTCAAGCAC
CGCATTTGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGCAT
CTTGACGgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGACTT
ACCTGTACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAAC
CCGAATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCA
AGTACGATGCTTTTTTTAATATCTTACAGGGAAGGTTTCCCTCTGTTCAC
TCTTGTCACCAGCTATGATCCCTatcccctcttttttcccattGAAATTG
TGATGCTGAATGCGATTTTATGTCGTCACATCTTCCCAGCATTCCCACCA
CATCATCTTGGACGACAAGTCTTTTACGCTCATTTtcccctcgttctcct
cttcctcatccagTTCCATCACATCATTCCCCACGAAATTACGGTCCGAG
ATTTCCGACACATCGCTGCGGATCTGAACGGCATCATCGGCTTAGAATAC
GGAGTGAATCTCATTCTATTCAATGGTCTCACAGACCCGGCTTACCGGTG
CGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTGGGTCAACTCGCCCATC
GACAGGCACACATGCGCCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTC
CAAGGCTTGGGGCTGATGGTGACGCCGGACACGCACCGACGACACCACAA
GACATACGACCAAGGATTTCCCATTCTGAGCGGTACGTGAGCCATAACAT
caatcttcttcctttctcttccgtcGCCGTTctgccgccctccgtcctca
tGTCTGCCGCCTTactccgtctcctcttccccttccgttcctttccctcg
ctttttcttccctaGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCGA
TACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTAC
TTTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCAT
GGgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGAAA
TCGTCGATGTTgtaaggaggaatggaagaggtAGAAAAGTGAGTTCCTGG
ATGGCCAGGGGCAAGCCAGAAAGCACGAGTGATAGCTTTGATACGTGAAA
ATTAGTCCAACGGTATACATCCCGGGCATTGGACTACGTGGTTAAGGCGA
TGTGAGCCAATTGTAAGAGGTTTGTGTAcgatgggggggggctgggcaAA
TGGCGTTTTTTAATCTGACTGGATGTCGGCAGTGGTCATAAAATTGTGTA
TCACGAAGTTCACGAGATAAAGGCAGCCCGAATCTAGGAAAAGCAATGAA
TGTTGGGAATCTCGAAGGACTTTCGCCGAAATTCGGCAAGAGGTATTGGC
AGATTTCTCCACGCTCGGATTCCC back to topCoding sequence (CDS) from alignment at CM002469.1:106455..108678+ >rna6624 ID=rna6624|Name=rna6624|organism=Nannochloropsis gaditana|type=CDS|length=3864bp|location=Sequence derived from alignment at CM002469.1:106455..108678+ (Nannochloropsis gaditana)
ATGTGCATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTC
TGCAGAGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATG
CGCAAGATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAG
GCGAAACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTA
CGCATGCTTACAGATGGTCAAAGAGGGCGCCACGGTTTTCAAGCACCGCA
TTTGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGCATCTTG
ACGgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGACTTACCT
GTACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAACCCGA
ATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCAATTC
CATCACATCATTCCCCACGAAATTACGGTCCGAGATTTCCGACACATCGC
TGCGGATCTGAACGGCATCATCGGCTTAGAATACGGAGTGAATCTCATTC
TATTCAATGGTCTCACAGACCCGGCTTACCGGTGCGTTGCCTGCTGCGCG
GTCCTGAACGCTTATTTGGGTCAACTCGCCCATCGACAGGCACACATGCG
CCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTCCAAGGCTTGGGGCTGA
TGGTGACGCCGGACACGCACCGACGACACCACAAGACATACGACCAAGGA
TTTCCCATTCTGAGCGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCG
ATACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTA
CTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCA
TGGgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGAA
ATCGTCGATGTTgtaaATGTGCATCGGGTCTGTTTCGGCCGCTATTCCGC
CGGTCACTGCTGCTTCTGCAGAGGCGGTGGCCCAACATTCGTCGATGCCT
GTACCGGAATCTGATGCGCAAGATGGAGACGCATCGATGGATATAGTCGA
CCGCTTAAATGTACAGGCGAAACATTTAGCGGCGAAGACAATCGGTGTAC
CTGGTGACGAGCATTACGCATGCTTACAGATGGTCAAAGAGGGCGCCACG
GTTTTCAAGCACCGCATTTGGCCTCTCATGTACATATATTGGGCATACAC
GGTTTACGGCATCTTGACGgggccctcccttgcttttgcATTGGGTGCTT
TCGTGCTGACTTACCTGTACATCGACCTTTATGGCGCCGTCTTACACATT
GTTCTTGACAACCCGAATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTG
CCTGGAGTTCCAATTCCATCACATCATTCCCCACGAAATTACGGTCCGAG
ATTTCCGACACATCGCTGCGGATCTGAACGGCATCATCGGCTTAGAATAC
GGAGTGAATCTCATTCTATTCAATGGTCTCACAGACCCGGCTTACCGGTG
CGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTGGGTCAACTCGCCCATC
GACAGGCACACATGCGCCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTC
CAAGGCTTGGGGCTGATGGTGACGCCGGACACGCACCGACGACACCACAA
GACATACGACCAAGGATTTCCCATTCTGAGCGGTTGGTCGGACGCCCCGG
TAACGTTTTTGTATCGATACGTGGTGCCATCTCAATGGGTGTGGCTGGCC
ATGTTCGTCCTCCTTACTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTA
TCTGCCTCTCGCTGCATGGgcgctggaagagggaggttgTGAGGGTGCAA
TAAGGGGGTGGGCGAAATCGTCGATGTTgtaaATGTGCATCGGGTCTGTT
TCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTGCAGAGGCGGTGGCCCA
ACATTCGTCGATGCCTGTACCGGAATCTGATGCGCAAGATGGAGACGCAT
CGATGGATATAGTCGACCGCTTAAATGTACAGGCGAAACATTTAGCGGCG
AAGACAATCGGTGTACCTGGTGACGAGCATTACGCATGCTTACAGATGGT
CAAAGAGGGCGCCACGGTTTTCAAGCACCGCATTTGGCCTCTCATGTACA
TATATTGGGCATACACGGTTTACGGCATCTTGACGgggccctcccttgct
tttgcATTGGGTGCTTTCGTGCTGACTTACCTGTACATCGACCTTTATGG
CGCCGTCTTACACATTGTTCTTGACAACCCGAATTTCCTCAAACTGCCCC
TAATAGGAGAAGCGTGCCTGGAGTTCCAATTCCATCACATCATTCCCCAC
GAAATTACGGTCCGAGATTTCCGACACATCGCTGCGGATCTGAACGGCAT
CATCGGCTTAGAATACGGAGTGAATCTCATTCTATTCAATGGTCTCACAG
ACCCGGCTTACCGGTGCGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTG
GGTCAACTCGCCCATCGACAGGCACACATGCGCCCCGAGAAAAGAGATCC
CGTGGTGGCCGTACTCCAAGGCTTGGGGCTGATGGTGACGCCGGACACGC
ACCGACGACACCACAAGACATACGACCAAGGATTTCCCATTCTGAGCGGT
TGGTCGGACGCCCCGGTAACGTTTTTGTATCGATACGTGGTGCCATCTCA
ATGGGTGTGGCTGGCCATGTTCGTCCTCCTTACTTTTGGCGGTATCGCGG
GTCTGATTCGGCTGTATCTGCCTCTCGCTGCATGGgcgctggaagaggga
ggttgTGAGGGTGCAATAAGGGGGTGGGCGAAATCGTCGATGTTgtaaAT
GTGCATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTG
CAGAGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATGCG
CAAGATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAGGC
GAAACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTACG
CATGCTTACAGATGGTCAAAGAGGGCGCCACGGTTTTCAAGCACCGCATT
TGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGCATCTTGAC
GgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGACTTACCTGT
ACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAACCCGAAT
TTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCAATTCCA
TCACATCATTCCCCACGAAATTACGGTCCGAGATTTCCGACACATCGCTG
CGGATCTGAACGGCATCATCGGCTTAGAATACGGAGTGAATCTCATTCTA
TTCAATGGTCTCACAGACCCGGCTTACCGGTGCGTTGCCTGCTGCGCGGT
CCTGAACGCTTATTTGGGTCAACTCGCCCATCGACAGGCACACATGCGCC
CCGAGAAAAGAGATCCCGTGGTGGCCGTACTCCAAGGCTTGGGGCTGATG
GTGACGCCGGACACGCACCGACGACACCACAAGACATACGACCAAGGATT
TCCCATTCTGAGCGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCGAT
ACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTACT
TTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCATG
GgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGAAAT
CGTCGATGTTgtaa back to top
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