EWM24074.1, cds6608 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|585105365|gb|EWM24073.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana] >gi|585105366|gb|EWM24074.1| Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query: 1 MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALEEGGCEGAIRGWAKSSML 321
MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALEEGGCEGAIRGWAKSSML
Sbjct: 1 MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALEEGGCEGAIRGWAKSSML 321
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|585112244|gb|EWM29670.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 264.618 bits (675), Expect = 5.977e-84 Identity = 135/297 (45.45%), Postives = 182/297 (61.28%), Query Frame = 0
Query: 1 MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLP 297
MC+ + S P A S + + S+ +A G D +D+LN A K + P +E Y +MV++G VFK R PL+Y YWA + G+L PSL F GA TY Y++LY AVLHIVLDNP F+K+P + + EF HHI+P EI R +R I DLN I+GL + +NL+LF+ + D CV AYLGQ AHRQAHM P K P LQ GL+V+P HR HH+TYD+GF IL GWS+ +T LY +VVPSQ+VWLA+F ++T G+AG++++Y+P
Sbjct: 1 MCVSARSETATPPAAVSDTSAS--GSIKRYYDNAGLGRQDGDAIDQLNAFMTKQAHK-VWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIP 294
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|553187743|ref|XP_005854670.1| (kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294387|gb|EKU21687.1| kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 240.35 bits (612), Expect = 9.795e-74 Identity = 131/295 (44.41%), Postives = 179/295 (60.68%), Query Frame = 0
Query: 17 SAEAVAQHSSMPVPESDAQDGD--ASMDIVDRLNVQAKHLAAKTIGV--PGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILF---NGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALE 304
S+ AV H S ES A+ +++LN A A + V P + ++V+ G VFKHR L+Y YWA T G+L PSLAF + AF++TYLYI+LYGA+LH+ LDNP+FL LP++ EACLEFQ+HH+IP EIT+R + IAADLN I+ L++ V I+F GL +P C ++NAYL + AHRQAH KR LQ G +V+ HRRHH+T+D GFP+LSG S+ + F+ V +QWVWLA F+L+T G+ +I + + L W E
Sbjct: 27 SSTAVGGHDS----ESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGAGLLRCPSLAFGMSAFIITYLYIELYGAILHVNLDNPSFLFLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVALQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFILMTLAGLPCIISVNMRLWEWGGE 317
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|585101427|gb|EWM21272.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 239.965 bits (611), Expect = 1.203e-73 Identity = 132/303 (43.56%), Postives = 181/303 (59.74%), Query Frame = 0
Query: 17 SAEAVAQHSSMPVPESDAQDGD--ASMDIVDRLNVQAKHLAAKTIGV--PGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILF---NGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALE---EGGCE 309
S+ AV H S ES A+ +++LN A A + V P + ++V+ G VFKHR L+Y YWA T G+L PS AF + AF++TYLYI+LYGA+LH+ LDNP+FL LP++ EACLEFQ+HH+IP EIT+R + IAADLN I+ +++ V I+F GL +P C ++NAYL + AHRQAH KR LQ G +V+ HRRHH+T+D GFP+LSG S+ + F+ V +QWVWLA F+ +TF G+ +I + + L W E GG E
Sbjct: 27 SSTAVGGHDS----ESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQE 325
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|676396509|ref|XP_009041532.1| (hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens] >gi|323447839|gb|EGB03747.1| hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens]) HSP 1 Score: 114.005 bits (284), Expect = 1.260e-25 Identity = 87/287 (30.31%), Postives = 129/287 (44.95%), Query Frame = 0
Query: 8 AAIPPVTAASAEAVAQHSSMPVPESDAQD--GDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLD---NPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHK-TYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGI 288
AA P+ AA V ++ VP + D DI++R + AKT H + +GA V+ +R ++++Y A +Y I PS A L YL D+Y V H+ LD N LK ++ + CLEFQ+HH IP +IT + F ADLN I+ + +N + T A + + AY GQ HR AH KR V L G M + H HHK +D F L G+ D + + ++ + WVW ++ +FG +
Sbjct: 35 AARDPLLAAVPREVYMDAASNVPSASYYKDLNDKVADILER-----QRTGAKTAPPIELSHV----VAADGALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTGTA-AALTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|676397009|ref|XP_009041782.1| (hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens] >gi|323447600|gb|EGB03515.1| hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens]) HSP 1 Score: 110.153 bits (274), Expect = 3.607e-24 Identity = 86/287 (29.97%), Postives = 128/287 (44.60%), Query Frame = 0
Query: 8 AAIPPVTAASAEAVAQHSSMPVPESDAQD--GDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLD---NPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHK-TYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGI 288
AA P+ AA V ++ VP + D DI++R + AKT H + +GA V+ +R ++++Y A +Y I PS A L YL D+Y V H+ LD N LK ++ + CLEFQ+HH IP +IT + F ADLN I+ + +N + T + + AY GQ HR AH KR V L G M + H HHK +D F L G+ D + + ++ + WVW ++ +FG +
Sbjct: 35 AARDPLLAAVPREVYMDAASNVPSASYYKDLNDKVADILER-----QRTGAKTAPPIELSHV----VAADGALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALR-YTTGTAATLTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|298706641|emb|CBJ29579.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 102.449 bits (254), Expect = 9.597e-22 Identity = 77/222 (34.68%), Postives = 109/222 (49.10%), Query Frame = 0
Query: 70 LQMVKEGATVFKHRIWPLMYIYWAYTV-----YGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILF--NGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLT 284
+Q V G F RI L+ Y ++ YGIL +A +GAF + Y +D Y VLH+VLD+ + +PL+ + +EFQ+HH IP + R F DLN I+GL + LF G D ++ AY G HRQAH KR LQ G+M++P H+ HH L G + PVT+L R + S + W+A+F+ LT
Sbjct: 37 IQFVLGGRLPFVKRIETLVRGYVCVSMFFLIRYGILEC-GVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNLGSIF-WIALFLGLT 256
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|954193073|gb|KRX05823.1| (hypothetical protein PPERSA_02355 [Pseudocohnilembus persalinus]) HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20 Identity = 57/207 (27.54%), Postives = 103/207 (49.76%), Query Frame = 0
Query: 77 ATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFL---KLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMF 280
A V++ R L+ Y +Y + PS + +F L + + DL+ +LH+ LD+P L + ++ + CLEFQ+HH+IP +I + + DLN ++GL + + L++P ++ AY GQ +H+ +H R V +LQ ++++ H+ HH +D F I SG + + L + + + VW +F
Sbjct: 99 AEVYEDRSKYLIAAYICLGIYLVSQSPSWQITVFSFFLNFFWYDLFSGILHVCLDDPRNLIGWRSAILYKPCLEFQWHHVIPADIASKPYYQSIGDLNFVVGLIFAFQCCM-GILSNPTAMVLSGFKFFFAYYGQFSHKMSHTFEGDRSIFVNLLQKSHILLSEKDHKVHHTNHDDNFCIGSGTFNGVIRSLLK-ITTNPNVWFCIF 303
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|676382249|ref|XP_009034403.1| (hypothetical protein AURANDRAFT_62325 [Aureococcus anophagefferens] >gi|323454948|gb|EGB10817.1| hypothetical protein AURANDRAFT_62325 [Aureococcus anophagefferens]) HSP 1 Score: 77.411 bits (189), Expect = 5.464e-12 Identity = 62/203 (30.54%), Postives = 86/203 (42.36%), Query Frame = 0
Query: 93 AYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLI----------LFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVA-VLQGLGLMVTPDTHRRHH-KTYDQGFPILSGWSDAPVTFLYRYVVPSQW--VWLAMFV 281
A+ +G + A + F+ + LYID+ G +LH+VLDN N + L+ F HH P +I H A + LI F+ C A LN+ + Q AHR +H P P VA VL+ GL++ P H RHH + F I+ GW+D V R W VWL +FV
Sbjct: 207 AFDAFGFVRRVGFAGTVQLFLASALYIDVTGLLLHLVLDNSNNERFSLLAGGVRSFVNHHADPQKIAATPGLHYAFTHLPVAAAIVWATLIAIYAAASRAKTFDSERYAPTAVFVCFASLNSVVMQFAHRWSHT-PAFAVPTVARVLERAGLLIAPAKHARHHVPPHASNFSIMMGWADKLVNPFLRLAPGGPWSPVWLYVFV 408
BLAST of EWM24074.1 vs. NCBI_GenBank
Match: gi|1191002459|ref|XP_020873615.1| (fatty acid desaturase 4, chloroplastic [Arabidopsis lyrata subsp. lyrata] >gi|297315418|gb|EFH45841.1| hypothetical protein ARALYDRAFT_492093 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 67.3958 bits (163), Expect = 4.161e-9 Identity = 54/190 (28.42%), Postives = 80/190 (42.11%), Query Frame = 0
Query: 78 TVFKHRIW-----PLMYIYWAYTVYG-----ILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKT-YDQGFPILSG 256
+ + HR+W +++ A +V G + P+LA G Y+ DL V H +DN P++G FQ HH P IT R F A +L+ + + L L DP + C Q H AH K P+V LQ +GL+V+ H HH+ Y+ + I+SG
Sbjct: 94 STWTHRLWVAAGCTTLFVSLAKSVIGGFDSHLWLEPALAGCAG-----YILADLGSGVYHWAIDNYGDESTPVVGSQIEAFQGHHKWPWTITRRQF---ANNLHALAQVITFTVLPLDLAFNDPVFHGFVCTFAFCIMFSQQFHAWAHGTKSKLPPLVVALQDMGLLVSRRQHAEHHRAPYNNNYCIVSG 275 The following BLAST results are available for this feature:
BLAST of EWM24074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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