rna6620, rna6620 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6620
Unique Name	rna6620
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1961
Alignment location	CM002469.1:95433..97308 -

Link to JBrowse

Properties


Property Name	Value
Product	Trypsin Inhibitor-like, cysteine rich domain protein
Orig transcript id	gnl\|cribi\|Naga_100063g9.3887.mrna
Orig protein id	gnl\|cribi\|Naga_100063g9.3887
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:95433..97308 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g9	gene6399	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24062.1	cds6604	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6620	rna6620-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:95433..97308-
coding sequence from alignment at CM002469.1:95433..97308-

mRNA sequence

>rna6620 ID=rna6620|Name=rna6620|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp
GGGGATGGGTGTCCGCGTAAATGTGACAAACTATTTTTACCAGCTTAACA
TACCATTATGTGCCACCTAGGCGTCTAAATTGGTAGTAAATATCAAATGA
AGGCCCGCCGGCATCTCACTTGCTTCGCGGCCCTATTGGCCATGGGGGCT
TTCTTGACAGACAATGCTCCCCTAGCCGAGGCTCAACGCATTCGTGGAAG
TGTTAGTACGGAGAAAGCTGATGCTATCCCGGCGGCAGGCCCTGCCGTCC
CCGTCCAGGACGCAGCTCCCTCAAGTGCTGATTTATCCACCACCGTGAAT
GAGGACGGGGTTCCTAAAACGAAAGTCCGCGTAAACATCCGACGCAAAGA
CGCCTCAAAAGAAGCACAGAACGGATTGCAAGAAGAAGGGCATCAAACAC
ACCACGTGTACGTAAATAAGATGGAGGTCAAGAGACTTGAAGAGCCACCC
GCTACCGGTATTGCTGTCGGAGAACCTAATCCTGCTGCTTCTCAGCACCA
CACTCATCACGCACATTTTGAGTTCCAACAGCGGACGATGCAGTCAAGGG
TGCAAGAGGGAGCGGACGTCCGGGAGGCGAAGGACGAGCTGAAGGAGCGA
GGAATTGGGGGAGCCACTCATGATAACAACCATAACGAGATCCTTGATAC
GGCCTCTGAATCTGAAACAGGCTTGAATCGCATGACTCTCAAGGAATATT
TGCTTGAATATGGAGAGGAAGGAAGGCGGGGAAGGAAGAACCAGAAGAGT
CCTGGCGCAGCATCTATAGCAGCCACGGACAAGGCGGGCGCAAGAACCAC
GACACCGGCGATGAAAACTCATACAACGCAGTCCTTGTCGAGCATGCCTT
CCCCCAATAAGGTCGAGTCCCCGGTGGATTCGACTAGAGAGGGAGCTGCG
ACGGAAGGAACAGAGCTGTCACCCGTTCCCTCCGAGTCCGCCCCCACAAA
GAATGGATTGGCCGGCATGGCGGACGAGACCAAACACAACGTGCAGGAAG
TCACCAAGCGAATTCGGAAAAGGGCGGCGGAACCAGGCCGAGAACGGGGG
GACATTGACCCAGCAGATTTGGAGGAGATCCGGGCACGGGCCGTGGGGGA
CGAGGACGAGGAGGGCGTGGAGGCGGAAGACGCGGCAGCCCAGGTCCCAG
GAAACGCAGTGGAGGAGGTCAGGCCGGAATGCCCGGGTGGAATGGTTTAC
AGCGACTGCGGTCGCCCCTGCACCGCCACCTGCGAGCATCTAAGACCGGT
GTGTCCGGCGGTGTGTGTCGCGCGCTGTCACTGCCCACACGACAAGCCGA
TTTGGGACGGAGAAAATTGTCTGGAGGAGGCACAGTGTCGCCTCAAAGCA
AAGGCGGATGGAAACCAGGAAGACGGGGCAAATAAGATGTCGGGCAAAGC
ACTGCGTGGAGCGAGAGTGGGGTAGTGGCCGTGGAACCGTAAGTTTTTGC
GTCGGAAGAAGACAAATCGTTGCGGCATAATGGTGGTCAGTGCCCGTCAT
CTTTATGAAAAATATGGTTGTCTCGAGCGAGCTATAAATATCCAATATTC
CCATGGAATGGGGTACAACAGAGACAACGAAATGGACGAAGCTGGGAATG
CGAAGGAACCAATCCATGAGTAACAGCGAAAAATAGATGAAAGATGTATA
AAACGTTTGGCAGGGAATGCAAAGATATTGTACAGGCAAACATCATGAAA
AAGGGCTACAAAGCATAGGAATACTTTTGATTCGTCGGAGAGAGGTAGGC
GAGTTTGAAAGATTGGATTGAGATGTTATCTCTAAGGTCAAGAGCTCTTG
AGGGCTCGTACTTCAGAGTACTCATAGCTTGATCAGAGTGGGGAATCAGT
TGAGTGCCTCCTTCCACCTTTCACAAACCAATTGCAAAAGTAGATAGAAG
CGAAGTTAAAAAGAAATCAGCACTCGGCACACACGCATGCGCTCCTACCA
ATGGCTACCAA

protein sequence of rna6620

>rna6620-protein ID=rna6620-protein|Name=rna6620|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQ
SLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADET
KHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAED
AAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCH
CPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG

mRNA from alignment at CM002469.1:95433..97308-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6620 ID=rna6620|Name=rna6620|organism=Nannochloropsis gaditana|type=mRNA|length=1876bp|location=Sequence derived from alignment at CM002469.1:95433..97308- (Nannochloropsis gaditana)
CCTCACTTCCTGAGGCATGTTCCTCACGATTCGAATTTTAATATGTTCGT
AAAGCCATGGGGGCTTTCTTGACAGACAATGCTCCCCTAGCCGAGGCTCA
ACGCATTCGTGGAAGTGTTAGTACGGAGAAAGCTGATGCTATCCCGGCGG
CAGGCCCTGCCGTCCCCGTCCAGGACGCAGCTCCCTCAAGTGCTGATTTA
TCCACCACCGTGAATGAGGACGGGGTTCCTAAAACGAAAGTCCGCGTAAA
CATCCGACGCAAAGACGCCTCAAAAGAAGCACAGAACGGATTGCAAGAAG
AAGGGCATCAAACACACCACGTGTACGTAAATAAGATGGAGGTCAAGAGA
CTTGAAGAGCCACCCGCTACCGGTATTGCTGTCGGAGAACCTAATCCTGC
TGCTTCTCAGCACCACACTCATCACGCACATTTTGAGTTCCAACAGCGGA
CGATGCAGTCAAGGGTGCAAGAGGGAGCGGACGTCCGGGAGGCGAAGGAC
GAGCTGAAGGAGCGAGGAATTGGGGGAGCCACTCATGATAACAACCATAA
CGAGATCCTTGATACGGCCTCTGAATCTGAAACAGGCTTGAATCGCATGA
CTCTCAAGGAATATTTGCTTGAATATGGAGAGGAAGGAAGGCGGGGAAGG
AAGAACCAGAAGAGTCCTGGCGCAGCATCTATAGCAGCCACGGACAAGGC
GGGCGCAAGAACCACGACACCGGCGATGAAAACTCATACAACGCAGTCCT
TGTCGAGCATGCCTTCCCCCAATAAGGTCGAGTCCCCGGTGGATTCGACT
AGAGAGGGAGCTGCGACGGAAGGAACAGAGCTGTCACCCGTTCCCTCCGA
GTCCGCCCCCACAAAGAATGGATTGGCCGGCATGGCGGACGAGACCAAAC
ACAACGTGCAGGAAGTCACCAAGCGAATTCGGAAAAGGGCGGCGGAACCA
GGCCGAGAACGGGGGGACATTGACCCAGCAGATTTGGAGGAGATCCGGGC
ACGGGCCGTGGGGGACGAGGACGAGGAGGGCGTGGAGGCGGAAGACGCGG
CAGCCCAGGTCCCAGGAAACGCAGTGGAGGAGGTCAGGCCGGAATGCCCG
GGTGGAATGGTTTACAGCGACTGCGGTCGCCCCTGCACCGCCACCTGCGA
GCATCTAAGACCGGTGTGTCCGGCGGTGTGTGTCGCGCGCTGTCACTGCC
CACACGACAAGCCGATTTGGGACGGAGAAAATTGTCTGGAGGAGGCACAG
TGTCGCCTCAAAGCAAAGGCGGATGGAAACCAGGAAGACGGGGCAAATAA
GATGTCGGGCAAAGCACTGCGTGGAGCGAGAGTGGGGTAGTGGCCGTGGA
ACCGTAAGTTTTTGCGTCGGAAGAAGACAAATCGTTGCGGCATAATGGTG
GTCAGTGCCCGTCATCTTTATGAAAAATATGGTTGTCTCGAGCGAGCTAT
AAATATCCAATATTCCCATGGAATGGGGTACAACAGAGACAACGAAATGG
ACGAAGCTGGGAATGCGAAGGAACCAATCCATGAGTAACAGCGAAAAATA
GATGAAAGATGTATAAAACGTTTGGCAGGGAATGCAAAGATATTGTACAG
GCAAACATCATGAAAAAGGGCTACAAAGCATAGGAATACTTTTGATTCGT
CGGAGAGAGGTAGGCGAGTTTGAAAGATTGGATTGAGATGTTATCTCTAA
GGTCAAGAGCTCTTGAGGGCTCGTACTTCAGAGTACTCATAGCTTGATCA
GAGTGGGGAATCAGTTGAGTGCCTCCTTCCACCTTTCACAAACCAATTGC
AAAAGTAGATAGAAGCGAAGTTAAAAAGAAATCAGCACTCGGCACACACG
CATGCGCTCCTACCAATGGCTACCAA

Coding sequence (CDS) from alignment at CM002469.1:95433..97308-

>rna6620 ID=rna6620|Name=rna6620|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at CM002469.1:95433..97308- (Nannochloropsis gaditana)
ATGACTCTCAAGGAATATTTGCTTGAATATGGAGAGGAAGGAAGGCGGGG
AAGGAAGAACCAGAAGAGTCCTGGCGCAGCATCTATAGCAGCCACGGACA
AGGCGGGCGCAAGAACCACGACACCGGCGATGAAAACTCATACAACGCAG
TCCTTGTCGAGCATGCCTTCCCCCAATAAGGTCGAGTCCCCGGTGGATTC
GACTAGAGAGGGAGCTGCGACGGAAGGAACAGAGCTGTCACCCGTTCCCT
CCGAGTCCGCCCCCACAAAGAATGGATTGGCCGGCATGGCGGACGAGACC
AAACACAACGTGCAGGAAGTCACCAAGCGAATTCGGAAAAGGGCGGCGGA
ACCAGGCCGAGAACGGGGGGACATTGACCCAGCAGATTTGGAGGAGATCC
GGGCACGGGCCGTGGGGGACGAGGACGAGGAGGGCGTGGAGGCGGAAGAC
GCGGCAGCCCAGGTCCCAGGAAACGCAGTGGAGGAGGTCAGGCCGGAATG
CCCGGGTGGAATGGTTTACAGCGACTGCGGTCGCCCCTGCACCGCCACCT
GCGAGCATCTAAGACCGGTGTGTCCGGCGGTGTGTGTCGCGCGCTGTCAC
TGCCCACACGACAAGCCGATTTGGGACGGAGAAAATTGTCTGGAGGAGGC
ACAGTGTCGCCTCAAAGCAAAGGCGGATGGAAACCAGGAAGACGGGGCAA
ATAAGATGTCGGGCAAAGCACTGCGTGGAGCGAGAGTGGGGTAG

Synonyms

Publications