EWM24062.1, cds6604 (CDS) Nannochloropsis gaditana

Overview
NameEWM24062.1
Unique Namecds6604
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:95969..96712 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24062.1
ProductTrypsin Inhibitor-like, cysteine rich domain protein
Orig transcript idgnl|cribi|Naga_100063g9.3887.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:95969..96712 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002919TIL_dom
Homology
BLAST of EWM24062.1 vs. NCBI_GenBank
Match: gi|585105354|gb|EWM24062.1| (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 501.13 bits (1289), Expect = 2.418e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG 247
            MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG
Sbjct:    1 MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG 247          
BLAST of EWM24062.1 vs. NCBI_GenBank
Match: gi|585105353|gb|EWM24061.1| (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 506.908 bits (1304), Expect = 1.315e-178
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG 247
            MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG
Sbjct:  196 MTLKEYLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSMPSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQEVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQVPGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG 442          
BLAST of EWM24062.1 vs. NCBI_GenBank
Match: gi|919076950|ref|XP_013419579.1| (PREDICTED: balbiani ring protein 3-like [Lingula anatina])

HSP 1 Score: 63.929 bits (154), Expect = 5.428e-8
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  165 PECPGGMVYSDCGRPCTATCEHLRPV--CPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKA 225
            P C GG VY +CG  C  TCE+L  +  CP +CV +C CP + P+W  + C+ E QCR+   A
Sbjct:  810 PVCSGGQVYMECGSSCETTCENLNSLMPCPLICVPKCQCPSELPVWHNKQCILEEQCRVSPLA 872          
BLAST of EWM24062.1 vs. NCBI_GenBank
Match: gi|919080875|ref|XP_013421565.1| (PREDICTED: SCO-spondin-like [Lingula anatina])

HSP 1 Score: 57.7658 bits (138), Expect = 7.256e-7
Identity = 32/90 (35.56%), Postives = 43/90 (47.78%), Query Frame = 0
Query:  136 RAVGDEDEEGVEAEDAAAQVPGNAV-----EEVRPECPGGMVYSDCGRPCTATCEHLRPV-CPAVCVARCHCPHDKPIWDGENCLEEAQC 219
            R   D    G +       +P N V     E VR EC GG V+  CG PCT TC   + + C A+C   C CP   PIW+  +C+++  C
Sbjct:   29 RCTSDSCPPGFKCVSTCVDLPCNKVNKTVCEPVREECTGGRVWKVCGSPCTLTCHTPKDMGCIALCRRGCECPSTAPIWNNGSCIKKEDC 118          
BLAST of EWM24062.1 vs. NCBI_GenBank
Match: gi|919047715|ref|XP_013407049.1| (PREDICTED: SCO-spondin-like [Lingula anatina])

HSP 1 Score: 60.077 bits (144), Expect = 8.820e-7
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  165 PECPGGMVYSDCGRPCTATCEHLRPV--CPAVCVARCHCPHDKPIWDGENCLEEAQCRLKAKA 225
            P C GG VY +CG  C  TCE+L  +  CP VCV +C CP + P+W  + C+ E QCR+   A
Sbjct:  401 PVCSGGQVYMECGSSCETTCENLNSLMPCPLVCVPKCQCPSELPVWHNKQCILEEQCRVSPLA 463          
The following BLAST results are available for this feature:
BLAST of EWM24062.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105354|gb|EWM24062.1|2.418e-179100.00Trypsin Inhibitor-like, cysteine rich domain prote... [more]
gi|585105353|gb|EWM24061.1|1.315e-178100.00Trypsin Inhibitor-like, cysteine rich domain prote... [more]
gi|919076950|ref|XP_013419579.1|5.428e-844.44PREDICTED: balbiani ring protein 3-like [Lingula a... [more]
gi|919080875|ref|XP_013421565.1|7.256e-735.56PREDICTED: SCO-spondin-like [Lingula anatina][more]
gi|919047715|ref|XP_013407049.1|8.820e-746.03PREDICTED: SCO-spondin-like [Lingula anatina][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6620rna6620Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications