rna6618, rna6618 (mRNA) Nannochloropsis gaditana

Overview
Namerna6618
Unique Namerna6618
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2922
Alignment locationCM002469.1:94517..95359 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100063g8.3877.mrna
Orig protein idgnl|cribi|Naga_100063g8.3877
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:94517..95359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100063g8gene6398Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6618rna6618-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24052.1cds6602Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6618 ID=rna6618|Name=rna6618|organism=Nannochloropsis gaditana|type=mRNA|length=2922bp
ATGGGGGGGTGGGAGGGGGGACAGGGGAAAGGGAGGGGAGGTGGGAAGGG
GCGGAAGGGACGGTTGGATGGGTATGATCCGTTGGGCAGCAATACCATCA
CAGCCGCGGAGCTTTTCGGGAAAAAATCGGTGGAAAAAGCCGCATGGGAA
TCCGACACGGATGGAGATGGGGAGGAAGAGGATGGGGAGGAAGGGATGAT
GGAGGATGAGGAGGACGAGGAGCAGCTGGAAGCGGATCGTCAGGCTTTCT
TGGCCGCGCTCCGTGGCGAATCGACGACCCAGAAGCCTTCCGTGGGAGAT
CCCGTAGGCTCTGTCCCGCCTAAGGCAGGGTTGGATGCGGAGGGTCCCGA
GGGTGGGAAAGGCGGGGAAGGAGGGGAGGGGCCATCGAAGGAGCCTCGCA
GCCGGTTGGGCAGACTCTTCCAGTCGGACGGGGACCTGGAGGAGGAGGAC
GAGGAAGGCCCGAGGGAGGGGCCCAAGACAGCCTTGGAGATTTTGCAGGA
GCAGGTGAAGAAAAAGGAGCTGAAACCCGTGGACCACGCCCGAGTTGACT
ACCTCCCCATCCGTAAGAAACTCTACATTGTCCCCCGCGCCCTCCACGGG
CATTCTGACGCAGAGCTGAACCGACGGCGGGAGGCCTTGGAGATCAAAGT
ACGGGGGAAAGGGTGCCCTGCCCCTTTGGAAACATGGGAGCAATCGGGTC
TACCGGACCGCGTCCTGGGGCTGTTGCGGAAATACAAACTCGCGGAGCCC
TTTCCGATCCAACGGCAGGCCCTCCCGGCCATCATGGCGGGGCGGGATAT
CATCGGGGTGGCTAAGACGGGGTCGGGGAAAACGCTGGCCTTCCTGCTCC
CCATGCTCCGGCACATTTTGGACCAGGAAGCGAGCTTTCCCTTGGGCGAG
GGGGAGGGTCCGATTGGCATGGTCATGGCCCCGGCCCGGGAGCTGGCTGT
GCAGATCCACACGGAGGCAAAGAAATTCTGTCGGCCGCTTGGCTTGCGCT
GCGTGGCTGTGTACGGTGGCGCGGGCATTGGGGACCAGATTGGGGAGCTC
AAGAGGGGCGCCCACATCGTCGTGTGCACGCCCGGGCGGATGATCGACAT
CTTGACCATGCAGGCGGGGAAGCTGATGAGCCTGTCCCGCGTCTCTTTTG
TGGTGATGGACGAGGCGGACCGTATGTTTGACATGGGCTTTGAACCCCAG
ATCAAAATGATCTTGACCAATATCCGCCCCGACCGGCAGACCGTCTTGTT
CTCGGCCACTTTCCCCAAGCAAGTAGAAAGCTTGGCCCGGAAAGTATTGG
CGTTCCCCTTGGAGATATTGGTGGGGGGCCGGAGTGTGGCCTCCGACGCC
ATCACGCAGTATGTGGAGGTGCGGGAGGAAGGGGAGGAGAAATACATGCG
TTTGCTGCAGCTCCTGGGGGTGTGGTACGAGAAGGGGAACGTACTGATAT
TTGTGGACACGCAACAGAAATGCGACAACCTTTTTGCCGATCTGATGCGC
AGCGGATACCCGTGCCTGTCCCTCCATGGGGGCATGGACCAAATGGATCG
TGACTCGACCATCCACGATTTCAAGTCTCGGGCGCGGACCTTGATGGTGG
CGACGAGCGTGGCGGGCCGGGGCTTGGATGTACCCGAGTTGTGCTGTGTA
ATCAACTATGCCTGCCCCAACCACCTGGAGGATTACGTGCACCGTGTGGG
TCGAACGGGGCGGGCGGGCCGAAAAGGCACCGCCTACACATTCCTCACGT
CCGAGGAAGAACAATACGCGCCTCTCTTGCTCAAAGCATTGACTCAAAGC
AAGCAAGAAGTGCCTCCTGAATTGCGGGCGATGGCAGAAGCATTCCAACA
GAAAGTAACGGCCGGGACGGCGCACTGGGCGGGGAGCGGATTCGGTGGGA
AAGGATTTACCTTCGAGGACAGCGAACAAACGGATGCCCAACGGACCGCG
GCATTGCAGAAGAAACAGTACCAGATCGAGCAAGGCTTGGTGGCGGAGGA
GGGAGGAGCAGGGGGAGGCGGGGACAGCAGCGACGAAGAGGCCGAGTTGG
AGGAAGAGAAGAGGAAGCGCGCGACGACGCCCACCACGGAGGGAACCGCT
GGTGGAGCTGCGGCTGTGGTGGAAGGCGTGGCACCCAAAATTCCTTCGCA
GGCAGTGTCAGGCTCACCAGGGGTGGGAGAAGGGGAGAGCGGTGTCAGTA
CAGGAATTTTAGCGGCAGTGGAGCGGGCCAAGGCCCTTGCTGAACGGCTG
AAACAGGGGGGCACAGGGGCGTCGGCCAACGTGCCATCCACCACACCGTC
CCTTCCTTCCCCGCCTGGGGGAACTGGCGCTCCTGCTCCTCCTCCATCCA
CCTCGGATGCGTTGGCACGTGCGCGGGCATTAGCCGAGAAATTTGGTGCC
GCCCCATCCACAGCGGCCGCCGCTGCTGGGCTTGGTGCTGGCTCTACTGT
CACTGCAGCGGACGCCCTGAAAGCGGCCCTGGCTATCGCCGGAGGTGTCA
GTGCGGAGAAAGTTGAGAAGAAGGAGCATTTTTTCGAAGAGCTGGAGATC
AACGAGTACCCACAGCAAGCTCGTTGGAAAGCGACGCAAAAGGATAACGT
GAGCCAGATCCAAGAGCGGACGGAATGTTCGGTGATCACGCGGGGGCGCT
ACGTGGCTCCAGGGCAAGAGCATACCCTGGAACCTGGAGAACGAAAATTG
TATTTGCTCATCGAAGGGAGGACCGAGCTGGCTGTTCGCCAGGCGCGACG
GGAATTTCAAAGGATTTTGGACGAGGAAACCTTGCGTGTGGGTTCTCGAC
CCCAGTTTGGTCGCTATTCCGTCTTGAGGAGAAGGGAGGGAGCGACGGAG
GTTGTGGAGGAAAGAGGATGCGTAGGGAGGGTTGATTGCCGTGGCACAGC
TCACAATTGGCTTGTCATGTGA
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protein sequence of rna6618

>rna6618-protein ID=rna6618-protein|Name=rna6618|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MLMASQVQSWGKVLPAPTAPLFHAFDAMSLRSHFAYTPVYHVSRIKRLGP
PLLRDGGCLTPGTRPFLPVPPQHCLLFLRFCGSILCPCYWRDICAGGCIH
LGYLSARYLFLLPFLPLRGCTHVLGDKGEDSRLSTVCRLAERVNLKLDGV
GYFLVVDQLDTYVSCYESGRISKYDR
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mRNA from alignment at CM002469.1:94517..95359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6618 ID=rna6618|Name=rna6618|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002469.1:94517..95359+ (Nannochloropsis gaditana)
ATGTTGATGGCTAGCCAAGTGCAGTCATGGGGCAAagtccttcctgctcc
tacCGCCCCACTTTTTCACGCTTTCGATGCAATGTCCCTTCGATCCCATT
TTGCTTATACCCCTGTCTATCACGTTAGCAGGATCAAGCGACTTGGCCCA
CCTCTTCTACGAGACGGCGGATGTTTGACGCCAGGTACACGTCCGTttct
tcccgtccctccccagcattgtctcctctttcttcgttTTTGTGGCTCCA
TCTTGTGTCCATGTTATTGGCGTGACATCTGTGCCGGTGGGTGCATCCAC
GTAAAGTGAGGCAAAGCAATCGAAATCCGAGAGAAGGATTCGATTTCGAC
CCACGTCCTTTCtacctttctctcccttgccaCCACTTTATGACCGTGGC
GGGGCCCTACACCACTACCAACTGCAACACAACTTTCTACCTCGTGACAC
CCGCTTTAATTTTCTTCCACGGCTGCCCATTTTGACATCGATCCAGTCCT
ACTGGTGTAGTTGGGATACCTTTCCGCGCGCTACCTTTTCCTTCTacctt
tcctgcctctgcGCGGGGTTCTAGGGAGAGAtaggagcaggggggggcaa
TAGCGTCTAGGCAGAAAGACAGTCAATAGAAATGGAgtgtggagaagggg
acaAGAGATGGAGAGATAGTGTACACATGTATTGGGTGACAAAGGTGAAG
ATAGTCGCTTGTCAACTGTATGCAGGCTCGCGGAGCGTGTGAATTTGAAA
TTGGACGGCGTTGGCTACTTTTTAGTGGTAGACCAGTTGGATACATACGT
ATCCTGCTATGAGAGCGGAAGAATCAGCAAATATGATAGGTAA
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Coding sequence (CDS) from alignment at CM002469.1:94517..95359+

>rna6618 ID=rna6618|Name=rna6618|organism=Nannochloropsis gaditana|type=CDS|length=1593bp|location=Sequence derived from alignment at CM002469.1:94517..95359+ (Nannochloropsis gaditana)
ATGTTGATGGCTAGCCAAGTGCAGTCATGGGGCAAagtccttcctgctcc
tacCGCCCCACTTTTTCACGCTTTCGATGCAATGTCCCTTCGATCCCATT
TTGCTTATACCCCTGTCTATCACGTTAGCAGGATCAAGCGACTTGGCCCA
CCTCTTCTACGAGACGGCGGATGTTTGACGCCAGGTACACGTCCGTttct
tcccgtccctccccagcattgtctcctctttcttcgttTTTGTGGCTCCA
TCTTGTGTCCATGTTATTGGCGTGACATCTGTGCCGGTGGGTGCATCCAC
TTGGGATACCTTTCCGCGCGCTACCTTTTCCTTCTacctttcctgcctct
gcGCGGGTGTACACATGTATTGGGTGACAAAGGTGAAGATAGTCGCTTGT
CAACTGTATGCAGGCTCGCGGAGCGTGTGAATTTGAAATTGGACGGCGTT
GGCTACTTTTTAGTGGTAGACCAGTTGGATACATACGTATCCTGCTATGA
GAGCGGAAGAATCAGCAAATATGATAGGTAAATGTTGATGGCTAGCCAAG
TGCAGTCATGGGGCAAagtccttcctgctcctacCGCCCCACTTTTTCAC
GCTTTCGATGCAATGTCCCTTCGATCCCATTTTGCTTATACCCCTGTCTA
TCACGTTAGCAGGATCAAGCGACTTGGCCCACCTCTTCTACGAGACGGCG
GATGTTTGACGCCAGGTACACGTCCGTttcttcccgtccctccccagcat
tgtctcctctttcttcgttTTTGTGGCTCCATCTTGTGTCCATGTTATTG
GCGTGACATCTGTGCCGGTGGGTGCATCCACTTGGGATACCTTTCCGCGC
GCTACCTTTTCCTTCTacctttcctgcctctgcGCGGGTGTACACATGTA
TTGGGTGACAAAGGTGAAGATAGTCGCTTGTCAACTGTATGCAGGCTCGC
GGAGCGTGTGAATTTGAAATTGGACGGCGTTGGCTACTTTTTAGTGGTAG
ACCAGTTGGATACATACGTATCCTGCTATGAGAGCGGAAGAATCAGCAAA
TATGATAGGTAAATGTTGATGGCTAGCCAAGTGCAGTCATGGGGCAAagt
ccttcctgctcctacCGCCCCACTTTTTCACGCTTTCGATGCAATGTCCC
TTCGATCCCATTTTGCTTATACCCCTGTCTATCACGTTAGCAGGATCAAG
CGACTTGGCCCACCTCTTCTACGAGACGGCGGATGTTTGACGCCAGGTAC
ACGTCCGTttcttcccgtccctccccagcattgtctcctctttcttcgtt
TTTGTGGCTCCATCTTGTGTCCATGTTATTGGCGTGACATCTGTGCCGGT
GGGTGCATCCACTTGGGATACCTTTCCGCGCGCTACCTTTTCCTTCTacc
tttcctgcctctgcGCGGGTGTACACATGTATTGGGTGACAAAGGTGAAG
ATAGTCGCTTGTCAACTGTATGCAGGCTCGCGGAGCGTGTGAATTTGAAA
TTGGACGGCGTTGGCTACTTTTTAGTGGTAGACCAGTTGGATACATACGT
ATCCTGCTATGAGAGCGGAAGAATCAGCAAATATGATAGGTAA
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Synonyms
Publications