rna6616, rna6616 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6616
Unique Name	rna6616
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	873
Alignment location	CM002469.1:86717..88388 -

Link to JBrowse

Properties


Property Name	Value
Product	transaminase transferring nitrogenous groups
Orig transcript id	gnl\|cribi\|Naga_100063g5.3896.mrna
Orig protein id	gnl\|cribi\|Naga_100063g5.3896
Gene	OsNAAT1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:86717..88388 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
OsNAAT1	gene6396	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6616	rna6616-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24071.1	cds6600	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:86717..88388-
coding sequence from alignment at CM002469.1:86717..88388-

mRNA sequence

>rna6616 ID=rna6616|Name=rna6616|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
ATGCACGGTGAATCAGGGAAGCAATCTTTGCGTGGAGCTCTGAAAGAGGA
CGTGCCAGGGTTTAACTTTGACAATTACGCCCGAAATGCCTCCTTGCCTA
CGGAGACGACTATGCACTTACCCTCGGCCATGAAAACGGGCACGACCATC
GCAGGCGTCACCTTCAAGGACGGCGTGGTATTGGGCGCGGACACACGGGC
GACGGGCGGCACGGAAGTGGCGGACAAGAACTGTGAGAAGATCCACTACT
TGGCTCCCAACATTTATTGCTGCGGGGCGGGGACGGCGGCCGACACGGAG
AAAACGACCGAGATGATCAGCTCCCAATTAGATCTCCTACGCCTGTCCAC
CGGTTCCCCCTCCCGCGTGGTCACGGCCTGCACCATGCTGAAACGGATGC
TTTTCCGTTACCAAGGCCATGTGTCGGCCGCTTTGGTGCTAGGGGGGGTA
GACAGTTCGGGCGCGCATCTCTACCAGATCTACCCCCACGGTTCCACGGA
CAAGAACCCTTACGTGACCATGGGGAGTGGGAGCTTGGCGGCCATGAGTG
TCTTCGAGACGGGCTTCAAGGAGGACATGACGGAGGCGGAGGCAATCGAG
CTCGTGAAAGAGGCGATTCTCGCGGGGATATACAATGATTTGGGCTCGGG
CAGTAATGTAGATTTGACCATCATTAGGAGGAATGGGGAAGTCACCGTGC
TGCGAGGCTACCTGACTCCGAACGATGTGGAACCTCTTCGGACGTCGTAC
AAGCGCCCGGCCGCGCTTTCCGTGCCTGCTGGCGCCACGGCAGTGCTTTC
GACGCACATGGACCCCGCCCGGCCGGGGCTCGAAGGGCTGGTCATAGAAG
ATGCGACAGCCATGACGTTTTGA

protein sequence of rna6616

>rna6616-protein ID=rna6616-protein|Name=rna6616|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
MGQGVEGEKYPESRGIGTQKEAVEDVGKQESRSLHGYGPIAGNADLLAAL
TRKLETENRLDLTGQDILVTGGANQAFALLALALCDPGDRAVLFAPYYFS
HLVALQIAQAEVVKGRWDPATWLPDVEHLRSLLAASPVKMVVLTTPGNPT
GAVCPESLLKEVAALCRKAGAWLVVDESYEHFLHEGARHVSLCASAYVRE
SNLDVLIFLPTRNRPSLYCITPCLSVSALMRLFHHPHLVPSLPSRPCVRF
PGRLLTLVVSILHPPIVLLQSRFFRVDTRVFLLQVLRHGGVAVRVSSLPP
GPENGPPFPPRHNPYARGHDFASCGVGGFGSWEKGESHHGEGGGRRSLPV
RRMVPSASMLIRALTHPFVHNTNGNAVGSETSGRPNGLP

mRNA from alignment at CM002469.1:86717..88388-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6616 ID=rna6616|Name=rna6616|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp|location=Sequence derived from alignment at CM002469.1:86717..88388- (Nannochloropsis gaditana)
ATGGGCCAAGGGGTAGAGGGAGAAAAGTACCCGGAATCAAGGGGCATAGG
AACACAAAAAGAGGCCGTGGAGGATGTAGGAAAGCAAGAATCAAGGTCTT
TGCATGGGTACGGTCCCATTGCCGGCAATGCAGACTTGCTCGCTGCATTG
ACGAGGAAATTGGAAACAGAGAATCGATTGGATTTGACAGGTAGGAAAGT
TTAGCAGCACTTTTCGACCAGGAACATTTACATGCCTGTCCACTTCTAGT
CGAGCAAAGGCCAGCATTTTGTCGCGCCCCTTCGGAGACGGCATGGTTTA
GCGTCCATTCCTACGTTTGTTCTTATTGCATTCATCTTGTGCCGCTTGGC
ACAAGTCCGTGACCTTGGTGCCATCACTCCACAGCGTTTTGCGTCTCCGT
GGGACCTTCACTCTCCTCCTCTACCTATTTCCCAGGGCAGGACATCTTAG
TGACCGGGGGGGCCAACCAGGCCTTCGCCCTCCTGGCCCTTGCCCTCTGT
GACCCGGGCGATCGCGCCGTCCTCTTTGCGCCCTATTACTTCTCCCATTT
GGTTGCCTTGCAAATAGCACAGGCCGAGGTGGTGAAAGGGCGTTGGGATC
CGGCGACTTGGCTCCCCGATGTGGAGGTAGGAAGGGAGGGGGGAAGAAAG
GGCGGAGGGGAGGGAGGAAGGGAGGGAGGAAGGGAAGGAGGGAAGAGGAG
GTGAAGGAGTGCGTTTCGTTACGAAGAACGAGACGTGAAAAAAAGAAGTG
ACACATTTCCAGACAATATAATATGTCATCGTCTGCCCAAGGTCCGAGCC
CCAGGATGCTTTGCAGTCAGAATGTACGAATAGAACGAGATCCCCTCTCA
CCCTTCCCCATACTCGACCGCCCTCCCCTCCAGCATTTACGCAGCCTCCT
CGCCGCCAGCCCGGTCAAAATGGTCGTCCTCACCACTCCGGGAAATCCTA
CAGGAGCGGTGTGTCCGGAGAGCCTCCTGAAAGAGGTGGCGGCCTTATGC
CGTAAGGCCGGGGCTTGGCTGGTGGTGGACGAGAGCTACGAGCACTTCCT
CCACGAGGGCGCCCGGCATGTCTCCTTGTGCGCGTCCGCGTACGTAAGAG
AATCAAATCTAGATGTTTTAATTTTTCTACCGACTAGAAACAGGCCATCA
CTATATTGTATTACCCCTTGCTTGTCCGTTTCTGCCCTGATGCGTCTTTT
CCACCACCCACATCTTGTCCCTTCGCTCCCCTCCCGTCCTTGCGTGCGAT
TCCCCGGGAGATTGCTTACCCTTGTCGTTTCTATTTTGCATCCTCCGATT
GTTCTTCTTCAGTCTCGATTTTTCAGGGTTGATACACGTGTATTCCTTCT
CCAAGTCCTACGGCATGGCGGGGTGGCGGTTAGGGTATCTAGTCTACCCC
CGGGGCCTGAAAACGGCCCTCCGTTCCCTCCAAGACACAATCCCTACGCA
CGCGGCCATGATTTCGCAAGCTGTGGGGTTGGCGGCTTTGGAAGCTGGGA
GAAAGGTGAGAGCCATCACGGGGAGGGCGGAGGAAGAAGGAGCTTGCCTG
TGCGACGCATGGTGCCCTCCGCGAGCATGCTTATCCGGGCCCTCACACAC
CCCTTTGTCCACAACACGAACGGCAATGCAGTGGGTTCAGAGACAAGTGG
CAGGCCTAACGGACTGCCGTGA

Coding sequence (CDS) from alignment at CM002469.1:86717..88388-

>rna6616 ID=rna6616|Name=rna6616|organism=Nannochloropsis gaditana|type=CDS|length=3510bp|location=Sequence derived from alignment at CM002469.1:86717..88388- (Nannochloropsis gaditana)
CATTTACGCAGCCTCCTCGCCGCCAGCCCGGTCAAAATGGTCGTCCTCAC
CACTCCGGGAAATCCTACAGGAGCGGTGTGTCCGGAGAGCCTCCTGAAAG
AGGTGGCGGCCTTATGCCGTAAGGCCGGGGCTTGGCTGGTGGTGGACGAG
AGCTACGAGCACTTCCTCCACGAGGGCGCCCGGCATGTCTCCTTGTGCGC
GTCCGCGTACGTAAGAGAATCAAATCTAGATGTTTTAATTTTTCTACCGA
CTAGAAACAGGCCATCACTATATTGTATTACCCCTTGCTTGTCCGTTTCT
GCCCTGATGCGTCTTTTCCACCACCCACATCTTGTCCCTTCGCTCCCCTC
CCGTCCTTGCGTGCGATTCCCCGGGAGATTGCTTACCCTTGTCGTTTCTA
TTTTGCATCCTCCGATTGTTCTTCTTCAGTCTCGATTTTTCAGGGTTGAT
ACACGTGTATTCCTTCTCCAAGTCCTACGGCATGGCGGGGTGGCGGTTAG
GGTATCTAGTCTACCCCCGGGGCCTGAAAACGGCCCTCCGTTCCCTCCAA
GACACAATCCCTACGCACGCGGCCATGATTTCGCAAGCTGTGGGGTTGGC
GGCTTTGGAAGCTGGGAGAAAGGTGAGAGCCATCACGGGGAGGGCGGAGG
AAGAAGGAGCTTGCCTGTGCGACGCATGGTGCCCTCCGCGAGCATGCTTA
TCCGGGCCCTCACACACCCCTTTGTCCACAACACGAACGGCAATGCAGTG
GGTTCAGAGACAAGTGGCAGGCCTAACGGACTGCCGTGAGGCAGGACATC
TTAGTGACCGGGGGGGCCAACCAGGCCTTCGCCCTCCTGGCCCTTGCCCT
CTGTGACCCGGGCGATCGCGCCGTCCTCTTTGCGCCCTATTACTTCTCCC
ATTTGGTTGCCTTGCAAATAGCACAGGCCGAGGTGGTGAAAGGGCGTTGG
GATCCGGCGACTTGGCTCCCCGATGTGGAGATGGGCCAAGGGGTAGAGGG
AGAAAAGTACCCGGAATCAAGGGGCATAGGAACACAAAAAGAGGCCGTGG
AGGATGTAGGAAAGCAAGAATCAAGGTCTTTGCATGGGTACGGTCCCATT
GCCGGCAATGCAGACTTGCTCGCTGCATTGACGAGGAAATTGGAAACAGA
GAATCGATTGGATTTGACAGCATTTACGCAGCCTCCTCGCCGCCAGCCCG
GTCAAAATGGTCGTCCTCACCACTCCGGGAAATCCTACAGGAGCGGTGTG
TCCGGAGAGCCTCCTGAAAGAGGTGGCGGCCTTATGCCGTAAGGCCGGGG
CTTGGCTGGTGGTGGACGAGAGCTACGAGCACTTCCTCCACGAGGGCGCC
CGGCATGTCTCCTTGTGCGCGTCCGCGTACGTAAGAGAATCAAATCTAGA
TGTTTTAATTTTTCTACCGACTAGAAACAGGCCATCACTATATTGTATTA
CCCCTTGCTTGTCCGTTTCTGCCCTGATGCGTCTTTTCCACCACCCACAT
CTTGTCCCTTCGCTCCCCTCCCGTCCTTGCGTGCGATTCCCCGGGAGATT
GCTTACCCTTGTCGTTTCTATTTTGCATCCTCCGATTGTTCTTCTTCAGT
CTCGATTTTTCAGGGTTGATACACGTGTATTCCTTCTCCAAGTCCTACGG
CATGGCGGGGTGGCGGTTAGGGTATCTAGTCTACCCCCGGGGCCTGAAAA
CGGCCCTCCGTTCCCTCCAAGACACAATCCCTACGCACGCGGCCATGATT
TCGCAAGCTGTGGGGTTGGCGGCTTTGGAAGCTGGGAGAAAGGTGAGAGC
CATCACGGGGAGGGCGGAGGAAGAAGGAGCTTGCCTGTGCGACGCATGGT
GCCCTCCGCGAGCATGCTTATCCGGGCCCTCACACACCCCTTTGTCCACA
ACACGAACGGCAATGCAGTGGGTTCAGAGACAAGTGGCAGGCCTAACGGA
CTGCCGTGAGGCAGGACATCTTAGTGACCGGGGGGGCCAACCAGGCCTTC
GCCCTCCTGGCCCTTGCCCTCTGTGACCCGGGCGATCGCGCCGTCCTCTT
TGCGCCCTATTACTTCTCCCATTTGGTTGCCTTGCAAATAGCACAGGCCG
AGGTGGTGAAAGGGCGTTGGGATCCGGCGACTTGGCTCCCCGATGTGGAG
ATGGGCCAAGGGGTAGAGGGAGAAAAGTACCCGGAATCAAGGGGCATAGG
AACACAAAAAGAGGCCGTGGAGGATGTAGGAAAGCAAGAATCAAGGTCTT
TGCATGGGTACGGTCCCATTGCCGGCAATGCAGACTTGCTCGCTGCATTG
ACGAGGAAATTGGAAACAGAGAATCGATTGGATTTGACAGCATTTACGCA
GCCTCCTCGCCGCCAGCCCGGTCAAAATGGTCGTCCTCACCACTCCGGGA
AATCCTACAGGAGCGGTGTGTCCGGAGAGCCTCCTGAAAGAGGTGGCGGC
CTTATGCCGTAAGGCCGGGGCTTGGCTGGTGGTGGACGAGAGCTACGAGC
ACTTCCTCCACGAGGGCGCCCGGCATGTCTCCTTGTGCGCGTCCGCGTAC
GTAAGAGAATCAAATCTAGATGTTTTAATTTTTCTACCGACTAGAAACAG
GCCATCACTATATTGTATTACCCCTTGCTTGTCCGTTTCTGCCCTGATGC
GTCTTTTCCACCACCCACATCTTGTCCCTTCGCTCCCCTCCCGTCCTTGC
GTGCGATTCCCCGGGAGATTGCTTACCCTTGTCGTTTCTATTTTGCATCC
TCCGATTGTTCTTCTTCAGTCTCGATTTTTCAGGGTTGATACACGTGTAT
TCCTTCTCCAAGTCCTACGGCATGGCGGGGTGGCGGTTAGGGTATCTAGT
CTACCCCCGGGGCCTGAAAACGGCCCTCCGTTCCCTCCAAGACACAATCC
CTACGCACGCGGCCATGATTTCGCAAGCTGTGGGGTTGGCGGCTTTGGAA
GCTGGGAGAAAGGTGAGAGCCATCACGGGGAGGGCGGAGGAAGAAGGAGC
TTGCCTGTGCGACGCATGGTGCCCTCCGCGAGCATGCTTATCCGGGCCCT
CACACACCCCTTTGTCCACAACACGAACGGCAATGCAGTGGGTTCAGAGA
CAAGTGGCAGGCCTAACGGACTGCCGTGAGGCAGGACATCTTAGTGACCG
GGGGGGCCAACCAGGCCTTCGCCCTCCTGGCCCTTGCCCTCTGTGACCCG
GGCGATCGCGCCGTCCTCTTTGCGCCCTATTACTTCTCCCATTTGGTTGC
CTTGCAAATAGCACAGGCCGAGGTGGTGAAAGGGCGTTGGGATCCGGCGA
CTTGGCTCCCCGATGTGGAGATGGGCCAAGGGGTAGAGGGAGAAAAGTAC
CCGGAATCAAGGGGCATAGGAACACAAAAAGAGGCCGTGGAGGATGTAGG
AAAGCAAGAATCAAGGTCTTTGCATGGGTACGGTCCCATTGCCGGCAATG
CAGACTTGCTCGCTGCATTGACGAGGAAATTGGAAACAGAGAATCGATTG
GATTTGACAG

Synonyms

Publications