rna6615, rna6615 (mRNA) Nannochloropsis gaditana

Overview
Namerna6615
Unique Namerna6615
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length270
Alignment locationCM002469.1:84095..85468 -

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Properties
Property NameValue
Product26s proteasome beta type 7 subunit
Orig transcript idgnl|cribi|Naga_100063g4.3893.mrna
Orig protein idgnl|cribi|Naga_100063g4.3893
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:84095..85468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100063g4gene6395Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6615rna6615-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24068.1cds6599Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6615 ID=rna6615|Name=rna6615|organism=Nannochloropsis gaditana|type=mRNA|length=270bp
ATGCTGTGGATGGACGGGAGGGCTTCGACGGGCTCGAGCAGCAACCATCG
CGCCCACACCACCACCACCACCACCATCAACAAGAACAACACCAGCAACA
ACATTATCAACCGCAACCACCACCACAACCATCACCACAACAACGTCAAC
CACATATCCTCCAGCCACAGCAACCGGAACAGGAGCCGCATGCCAGGGGA
TCGAGGGCAGGGGAGGAGCAGGGGGGGGGGAGACGCCACCACACAGAGGA
GCGGGGTCAGCGGGCGCTAG
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protein sequence of rna6615

>rna6615-protein ID=rna6615-protein|Name=rna6615|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MHGESGKQSLRGALKEDVPGFNFDNYARNASLPTETTMHLPSAMKTGTTI
AGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTE
KTTEMISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGV
DSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIE
LVKEAILAGIYNDLGSGSNVDLTIIRRNGEVTVLRGYLTPNDVEPLRTSY
KRPAALSVPAGATAVLSTHMDPARPGLEGLVIEDATAMTF
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mRNA from alignment at CM002469.1:84095..85468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6615 ID=rna6615|Name=rna6615|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp|location=Sequence derived from alignment at CM002469.1:84095..85468- (Nannochloropsis gaditana)
ATGCACGGTGAATCAGGGAAGCAATCTTTGCGTGGAGCTCTGAAAGAGGA
CGTGCCAGGGTTTAACTTTGACAATTACGCCCGAAATGCCTCCTTGCCTA
CGGAGACGACTATGCACTTACCCTCGGTGAGTAAGAGTGAGGAAAAGGAA
GTCAGCCGCGCAACGGCAAAATGTTCCACCACTTCACAGGATGAGGACGT
AGGCCAACGGAGCCCTCACGTGACTTGACGTGCAACGTGGCGCCATTTTC
CGGCTTTGACCCTCCCACGACTCCTCCCTTCTTCCCCCTATCTCCCCCCT
CGTCCCCCCCTGGACCGCAGGCCATGAAAACGGGCACGACCATCGCAGGC
GTCACCTTCAAGGACGGCGTGGTATTGGGCGCGGACACACGGGCGACGGG
CGGCACGGAAGTGGCGGACAAGAACTGTGAGAAGATCCACTACTTGGCTC
CCAACATTTATTGCTGCGGGGCGGGGACGGCGGCCGACACGGAGAAAACG
ACCGAGATGATCAGGTAGCCTGTGGTCCTGGACGTGGGAGGGAGACCTGG
GGGTACACGGGGAGGAAGGGCGTCGCGGTGGGGCCCGGGGCCATCTGTTC
CTGTGCCCGCAGCACCCTGTGTGAGTCTCCATTTCTCCCCTCACACCCGC
CTTGTTCCTCTCACAGCTCCCAATTAGATCTCCTACGCCTGTCCACCGGT
TCCCCCTCCCGCGTGGTCACGGCCTGCACCATGCTGAAACGGATGCTTTT
CCGTTACCAAGGCCATGTGTCGGCCGCTTTGGTGCTAGGGGGGGTAGACA
GTTCGGGCGCGCATCTCTACCAGATCTACCCCCACGGTTCCACGGACAAG
AACCCTTACGTGACCATGGGGAGTGGGAGCTTGGCGGCCATGAGTGTCTT
CGAGACGGGCTTCAAGGAGGACATGACGGAGGTGGGTAGGCGAAAAGAGG
GAGGGAGGGAGGAAGGGAGGGACAGACCGGTTTTTTAATGGCTGGGGTTG
CTGAGAAGCTTTCTCGTTGACCCGTCCACGTCCTATCTTCACCGACGCAT
CTCCCGTTCTCGCTTTCCTTGTCGACTCTCTTCCAGGCGGAGGCAATCGA
GCTCGTGAAAGAGGCGATTCTCGCGGGGATATACAATGATTTGGGCTCGG
GCAGTAATGTAGATTTGACCATCATTAGGAGGAATGGGGAAGTCACCGTG
CTGCGAGGCTACCTGACTCCGAACGATGTGGAACCTCTTCGGACGTCGTA
CAAGCGCCCGGCCGCGCTTTCCGTGCCTGCTGGCGCCACGGCAGTGCTTT
CGACGCACATGGACCCCGCCCGGCCGGGGCTCGAAGGGCTGGTCATAGAA
GATGCGACAGCCATGACGTTTTGA
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Coding sequence (CDS) from alignment at CM002469.1:84095..85468-

>rna6615 ID=rna6615|Name=rna6615|organism=Nannochloropsis gaditana|type=CDS|length=3492bp|location=Sequence derived from alignment at CM002469.1:84095..85468- (Nannochloropsis gaditana)
GCGGAGGCAATCGAGCTCGTGAAAGAGGCGATTCTCGCGGGGATATACAA
TGATTTGGGCTCGGGCAGTAATGTAGATTTGACCATCATTAGGAGGAATG
GGGAAGTCACCGTGCTGCGAGGCTACCTGACTCCGAACGATGTGGAACCT
CTTCGGACGTCGTACAAGCGCCCGGCCGCGCTTTCCGTGCCTGCTGGCGC
CACGGCAGTGCTTTCGACGCACATGGACCCCGCCCGGCCGGGGCTCGAAG
GGCTGGTCATAGAAGATGCGACAGCCATGACGTTTTGACTCCCAATTAGA
TCTCCTACGCCTGTCCACCGGTTCCCCCTCCCGCGTGGTCACGGCCTGCA
CCATGCTGAAACGGATGCTTTTCCGTTACCAAGGCCATGTGTCGGCCGCT
TTGGTGCTAGGGGGGGTAGACAGTTCGGGCGCGCATCTCTACCAGATCTA
CCCCCACGGTTCCACGGACAAGAACCCTTACGTGACCATGGGGAGTGGGA
GCTTGGCGGCCATGAGTGTCTTCGAGACGGGCTTCAAGGAGGACATGACG
GAGGCCATGAAAACGGGCACGACCATCGCAGGCGTCACCTTCAAGGACGG
CGTGGTATTGGGCGCGGACACACGGGCGACGGGCGGCACGGAAGTGGCGG
ACAAGAACTGTGAGAAGATCCACTACTTGGCTCCCAACATTTATTGCTGC
GGGGCGGGGACGGCGGCCGACACGGAGAAAACGACCGAGATGATCAGATG
CACGGTGAATCAGGGAAGCAATCTTTGCGTGGAGCTCTGAAAGAGGACGT
GCCAGGGTTTAACTTTGACAATTACGCCCGAAATGCCTCCTTGCCTACGG
AGACGACTATGCACTTACCCTCGGCGGAGGCAATCGAGCTCGTGAAAGAG
GCGATTCTCGCGGGGATATACAATGATTTGGGCTCGGGCAGTAATGTAGA
TTTGACCATCATTAGGAGGAATGGGGAAGTCACCGTGCTGCGAGGCTACC
TGACTCCGAACGATGTGGAACCTCTTCGGACGTCGTACAAGCGCCCGGCC
GCGCTTTCCGTGCCTGCTGGCGCCACGGCAGTGCTTTCGACGCACATGGA
CCCCGCCCGGCCGGGGCTCGAAGGGCTGGTCATAGAAGATGCGACAGCCA
TGACGTTTTGACTCCCAATTAGATCTCCTACGCCTGTCCACCGGTTCCCC
CTCCCGCGTGGTCACGGCCTGCACCATGCTGAAACGGATGCTTTTCCGTT
ACCAAGGCCATGTGTCGGCCGCTTTGGTGCTAGGGGGGGTAGACAGTTCG
GGCGCGCATCTCTACCAGATCTACCCCCACGGTTCCACGGACAAGAACCC
TTACGTGACCATGGGGAGTGGGAGCTTGGCGGCCATGAGTGTCTTCGAGA
CGGGCTTCAAGGAGGACATGACGGAGGCCATGAAAACGGGCACGACCATC
GCAGGCGTCACCTTCAAGGACGGCGTGGTATTGGGCGCGGACACACGGGC
GACGGGCGGCACGGAAGTGGCGGACAAGAACTGTGAGAAGATCCACTACT
TGGCTCCCAACATTTATTGCTGCGGGGCGGGGACGGCGGCCGACACGGAG
AAAACGACCGAGATGATCAGATGCACGGTGAATCAGGGAAGCAATCTTTG
CGTGGAGCTCTGAAAGAGGACGTGCCAGGGTTTAACTTTGACAATTACGC
CCGAAATGCCTCCTTGCCTACGGAGACGACTATGCACTTACCCTCGGCGG
AGGCAATCGAGCTCGTGAAAGAGGCGATTCTCGCGGGGATATACAATGAT
TTGGGCTCGGGCAGTAATGTAGATTTGACCATCATTAGGAGGAATGGGGA
AGTCACCGTGCTGCGAGGCTACCTGACTCCGAACGATGTGGAACCTCTTC
GGACGTCGTACAAGCGCCCGGCCGCGCTTTCCGTGCCTGCTGGCGCCACG
GCAGTGCTTTCGACGCACATGGACCCCGCCCGGCCGGGGCTCGAAGGGCT
GGTCATAGAAGATGCGACAGCCATGACGTTTTGACTCCCAATTAGATCTC
CTACGCCTGTCCACCGGTTCCCCCTCCCGCGTGGTCACGGCCTGCACCAT
GCTGAAACGGATGCTTTTCCGTTACCAAGGCCATGTGTCGGCCGCTTTGG
TGCTAGGGGGGGTAGACAGTTCGGGCGCGCATCTCTACCAGATCTACCCC
CACGGTTCCACGGACAAGAACCCTTACGTGACCATGGGGAGTGGGAGCTT
GGCGGCCATGAGTGTCTTCGAGACGGGCTTCAAGGAGGACATGACGGAGG
CCATGAAAACGGGCACGACCATCGCAGGCGTCACCTTCAAGGACGGCGTG
GTATTGGGCGCGGACACACGGGCGACGGGCGGCACGGAAGTGGCGGACAA
GAACTGTGAGAAGATCCACTACTTGGCTCCCAACATTTATTGCTGCGGGG
CGGGGACGGCGGCCGACACGGAGAAAACGACCGAGATGATCAGATGCACG
GTGAATCAGGGAAGCAATCTTTGCGTGGAGCTCTGAAAGAGGACGTGCCA
GGGTTTAACTTTGACAATTACGCCCGAAATGCCTCCTTGCCTACGGAGAC
GACTATGCACTTACCCTCGGCGGAGGCAATCGAGCTCGTGAAAGAGGCGA
TTCTCGCGGGGATATACAATGATTTGGGCTCGGGCAGTAATGTAGATTTG
ACCATCATTAGGAGGAATGGGGAAGTCACCGTGCTGCGAGGCTACCTGAC
TCCGAACGATGTGGAACCTCTTCGGACGTCGTACAAGCGCCCGGCCGCGC
TTTCCGTGCCTGCTGGCGCCACGGCAGTGCTTTCGACGCACATGGACCCC
GCCCGGCCGGGGCTCGAAGGGCTGGTCATAGAAGATGCGACAGCCATGAC
GTTTTGACTCCCAATTAGATCTCCTACGCCTGTCCACCGGTTCCCCCTCC
CGCGTGGTCACGGCCTGCACCATGCTGAAACGGATGCTTTTCCGTTACCA
AGGCCATGTGTCGGCCGCTTTGGTGCTAGGGGGGGTAGACAGTTCGGGCG
CGCATCTCTACCAGATCTACCCCCACGGTTCCACGGACAAGAACCCTTAC
GTGACCATGGGGAGTGGGAGCTTGGCGGCCATGAGTGTCTTCGAGACGGG
CTTCAAGGAGGACATGACGGAGGCCATGAAAACGGGCACGACCATCGCAG
GCGTCACCTTCAAGGACGGCGTGGTATTGGGCGCGGACACACGGGCGACG
GGCGGCACGGAAGTGGCGGACAAGAACTGTGAGAAGATCCACTACTTGGC
TCCCAACATTTATTGCTGCGGGGCGGGGACGGCGGCCGACACGGAGAAAA
CGACCGAGATGATCAGATGCACGGTGAATCAGGGAAGCAATCTTTGCGTG
GAGCTCTGAAAGAGGACGTGCCAGGGTTTAACTTTGACAATTACGCCCGA
AATGCCTCCTTGCCTACGGAGACGACTATGCACTTACCCTCG
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Synonyms
Publications