rna6612, rna6612 (mRNA) Nannochloropsis gaditana

Overview
Namerna6612
Unique Namerna6612
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2493
Alignment locationCM002469.1:76564..77361 +

Link to JBrowse

Properties
Property NameValue
ProductBeta-glucan synthesis-associated, SKN1
Orig transcript idgnl|cribi|Naga_100644g1.9855.mrna
Orig protein idgnl|cribi|Naga_100644g1.9855
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:76564..77361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100644g1gene6392Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6612rna6612-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24077.1cds6596Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6612 ID=rna6612|Name=rna6612|organism=Nannochloropsis gaditana|type=mRNA|length=2493bp
GCAACCTTGTTTTGAAAGTTTTAAGTGTCCGCACATCTTGGCCTACGAGC
GCCATTTGGACTGCGTTAATGGTTGTTTTTGCAATTCGTTTGTTGGTTTC
CTCGGACAGGCCATGGCGTCGACCTCCCGGCCCCCCGCACGGAAACGTCG
GAATACGCATGCAGCTGCATCCCCCGGTTCCACAAGGACCGTAGCAGCTC
TTTTCTACACAGCGGCGTGCACCTCGATCACTGTCGTGTCCTTTTCGCTC
CTACACACGACGCATGCCTTTGTTTATCTCCCACGAAGGGACCACCGCTT
GACAAGCACTCTCCCCTCCCAATGGGACCTCGGCCGTTGCAGCAGCAACC
ACGACGGTCGGCCTGGCATGCCGAAATGGAGAGGGCACACACGGGATATG
CTCGTCCGAACCGCGACGAGCAAGAAATCCTCCGCGGAGGCGCCGGAGGA
ACGGGATTGGAAACAAGCCTTGTTGGAGGACGACGACTTGGACATCGACG
CGATCATTGCCGCGAACAAGGAGACGCTGCCTCGGCTCCCGGGCATTTTA
AATGCGTCCCCGCGGGACGGGAACGTGGACTTGCCTGAGTCTTTTCTGGA
CGAGGCGGTCGCCTCCCCGAAGAAAGAGGAAGGGGTGGGGCCGCTCGTGT
CTCGGGCCAAAATGCAAGGACTCGGAGGAAAAGGGGAGGACGACGAGGAG
AAGAAAAAAGCCCAGCAAAACGCGCGTTTGGCCACATGGCTGGGCGAGAA
TGGAGTTTGGATGCAGGATAAATCCGGCTGGGGCGTCCCACCTCATCCCC
TCCTCTTATCCTCCCGAACCATCGACGAGATCGAATTGGAGGACTCTGGT
CGGGGCTTGATTTGCAAGTACCCCATCAACATGGGGAACGCGCTCTTCCA
GCTTCCTCTCAGCATCGTCATCGACAAGGAGAAGTCCCTGGCCGCCTTCG
ACGGCGCCCTCCCCGCGGACATCAACGAATACTTCGCGATCGCACTTATG
CTCATCAAGGAACGCGCGTTGGGGCCGAGCTCGTTTTGGGCCCCTTACAT
CGACGTGCTCCCCACCACGGAGGAGGTGAACCCCACCCTAGTCTGGCCCG
AGGGGGACCTGGCCCTGCTCGAGGCCTCGCCCTTGGTGGCGGCTACCCGG
AGTTTGAAACGGAAGTTGGCAGCCGAGTTTGCCCTCTTGGAAGAGCAGTA
CATGCGTGCCCGGTCGGATGTGTTTGACCCCAGCGTTTTTACTTTCGAGG
CGTATTTGTGGGCGTTCATCAACATTTTTTCGAGGGCGATTCGGGTGAAA
ATCGGGGGAAAACGGGGCCCGAGCGGGGAGGAGGAGGAGTCCATCATCAT
GTGTCCGTACGCCGACCTGATAAACCACAACCCCTTCGCCAACACCTACA
TTGTGGCGGAGAAGCCTTTCAAGATGTTCAACCCCATTCGGGGGGAGGAG
GTGATCACAATTTATGCGGACAAGGACTACAAGAAGATGGAGCAGGTGTA
CATTTCGTATGGGCCCAAGAGCAACGCCGACCTCCTCCTTCTCTACGGCT
TCTGCTTGGATCGAAATCCGTTCAATTCGGTCGACCTGACCGTCGCGCTC
TTACCGGACGATCCTTTGTTCGAGGAGAAGCGCGCTTTCCTGGCCCAGGC
AGAACGACGGGAGAAGGAAGCTTTTCCGTTGTTTGCGGACAGGTACCCCA
ACGAGCTCTTTGAATACCTGCGCCTTGTGTACCTGACCAAGGAAGACATG
GGAGGACGGGCGTTGCGGGAGATGGAGTTTACGGATCCGATCAGTCTCGA
GAACGAGCTGGCGGCGATGGCCTCTATTGAGGGTGCCTGTGAAGAGGCGC
TCGCTTCGTATTCTACCAAAGAGGAGGACGATGCCCGTCTCATCAACGAC
TCCAAGCTTTTCAACATGTTTCCCAAGACCCAGCGGATGGCCATTAAGCA
TCGGCGGTCGGAGAAACGTCTCTTGAAGAAAACGGCGGCCGCGGTAAAAC
AGCAGCTTTTGAACCTGAGAAGTGGGAAAAGGAAGCTTCGACCAGAGGAG
GAGTGAATGCACGGGCACGCAGGAAAATATCTCGGAATACATTAGGATGG
TGGGCGGGTAGGTGGCAGATAATGACGGTGTAGTGAAAAATGAATGATAG
TAGTCGTAAATCAACGCGGTTTTTCAACTTGAGAGGACGCGAGAAAATTC
AGACCACCAGCATTAAAGAAAGAGGTCATTTGCTGATGTCAGCAAGACCT
CAGCTTTGTTGATCTAGGCAGTAAGAAAGTCTTTGTTCTGAGAGCCCCCA
CGCTTCCCCTCCTTTTTGACTCTTGTCTGCACCTTTCTCACCAAGACCTT
CGCAACCGGTGGACATAAAATTTTACCGCACACGAAATTCCTGTATTTCA
GCACGTTGTATGCATAGACATTGTTTTCGTTCCTATCCATTTTATCGACG
CAGAAATCCACCCTTTCTCCCGTCAGTACAATCCCCGGACCGC
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protein sequence of rna6612

>rna6612-protein ID=rna6612-protein|Name=rna6612|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPN
LPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNH
SYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKF
CFSGGVVEASLKLPGPSDVGLPTSIPPT
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mRNA from alignment at CM002469.1:76564..77361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6612 ID=rna6612|Name=rna6612|organism=Nannochloropsis gaditana|type=mRNA|length=798bp|location=Sequence derived from alignment at CM002469.1:76564..77361+ (Nannochloropsis gaditana)
ATGCCTAcctacctccccctgcaccctctcctcctcctcctcctcctcct
cgcggccttctcccctccctccctcctcaccaaGGCCGGGTGGGTGGACC
CCGACAGCCCACACTCAGTCCAGCGcacccactccctccgcgaCCCGaac
cttccctctctgcgCCTAGTCATGTCGGACGAATTTAATGTGGCAGCTCG
GACCTTTGCGGACGGGCACGACCCTACCTGGACCGCGGGGGACCACAGCG
ACGACGCCAGGACCAGCGTGGGGAAAGGGGCTTTGATATATTACAACCAT
TCCTACGCGAGCACCACCGAAGAggtccggggggggggcagttTGGCATG
GGGGGACTGGGCGGTGAGGTGTTTGCCACACGTGCTTGTCCGTCTTGTAC
AACGGACCACGCTGGGCCGCTTTCTCGGCTCTTGGCGTCCCGCTGCCTCT
TGACTGAAATGGCGGGAGTCCGCGCCTCCGGAaactctcctccctcactc
cctccctccctcgctccctccctcccttcctgcctccgtcAGGGTCACCT
CAaaatcaccaccaccagcgaGTTGACGCAGTGGAAAGGGTTCAACCCGT
TCACGCAGAAATACGAAATCTTTGAAAAGGAGTTTCGCGGCGCCATGGTC
AACACCTGGAACAAGTTCTGCTTCTCCGGCGGGGTGGTGGAAGCCTCCTT
AAAACTACCCGGACCCAGCGACGTCGGCGGGCTCTGGCCTGCTTTCTGGC
TGATGGGGAATCTAGGTCGGGCTACCTACGAGCATTCCACCAACTTGA
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Coding sequence (CDS) from alignment at CM002469.1:76564..77361+

>rna6612 ID=rna6612|Name=rna6612|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002469.1:76564..77361+ (Nannochloropsis gaditana)
ATGCCTAcctacctccccctgcaccctctcctcctcctcctcctcctcct
cgcggccttctcccctccctccctcctcaccaaGGCCGGGTGGGTGGACC
CCGACAGCCCACACTCAGTCCAGCGcacccactccctccgcgaCCCGaac
cttccctctctgcgCCTAGTCATGTCGGACGAATTTAATGTGGCAGCTCG
GACCTTTGCGGACGGGCACGACCCTACCTGGACCGCGGGGGACCACAGCG
ACGACGCCAGGACCAGCGTGGGGAAAGGGGCTTTGATATATTACAACCAT
TCCTACGCGAGCACCACCGAAGAgGGTCACCTCAaaatcaccaccaccag
cgaGTTGACGCAGTGGAAAGGGTTCAACCCGTTCACGCAGAAATACGAAA
TCTTTGAAAAGGAGTTTCGCGGCGCCATGGTCAACACCTGGAACAAGTTC
TGCTTCTCCGGCGGGGTGGTGGAAGCCTCCTTAAAACTACCCGGACCCAG
CGACGTCGGGCTACCTACGAGCATTCCACCAACTTGAATGCCTAcctacc
tccccctgcaccctctcctcctcctcctcctcctcctcgcggccttctcc
cctccctccctcctcaccaaGGCCGGGTGGGTGGACCCCGACAGCCCACA
CTCAGTCCAGCGcacccactccctccgcgaCCCGaaccttccctctctgc
gCCTAGTCATGTCGGACGAATTTAATGTGGCAGCTCGGACCTTTGCGGAC
GGGCACGACCCTACCTGGACCGCGGGGGACCACAGCGACGACGCCAGGAC
CAGCGTGGGGAAAGGGGCTTTGATATATTACAACCATTCCTACGCGAGCA
CCACCGAAGAgGGTCACCTCAaaatcaccaccaccagcgaGTTGACGCAG
TGGAAAGGGTTCAACCCGTTCACGCAGAAATACGAAATCTTTGAAAAGGA
GTTTCGCGGCGCCATGGTCAACACCTGGAACAAGTTCTGCTTCTCCGGCG
GGGTGGTGGAAGCCTCCTTAAAACTACCCGGACCCAGCGACGTCGGGCTA
CCTACGAGCATTCCACCAACTTGAATGCCTAcctacctccccctgcaccc
tctcctcctcctcctcctcctcctcgcggccttctcccctccctccctcc
tcaccaaGGCCGGGTGGGTGGACCCCGACAGCCCACACTCAGTCCAGCGc
acccactccctccgcgaCCCGaaccttccctctctgcgCCTAGTCATGTC
GGACGAATTTAATGTGGCAGCTCGGACCTTTGCGGACGGGCACGACCCTA
CCTGGACCGCGGGGGACCACAGCGACGACGCCAGGACCAGCGTGGGGAAA
GGGGCTTTGATATATTACAACCATTCCTACGCGAGCACCACCGAAGAgGG
TCACCTCAaaatcaccaccaccagcgaGTTGACGCAGTGGAAAGGGTTCA
ACCCGTTCACGCAGAAATACGAAATCTTTGAAAAGGAGTTTCGCGGCGCC
ATGGTCAACACCTGGAACAAGTTCTGCTTCTCCGGCGGGGTGGTGGAAGC
CTCCTTAAAACTACCCGGACCCAGCGACGTCGGGCTACCTACGAGCATTC
CACCAACTTGA
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Synonyms
Publications