EWM24077.1, cds6596 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|585105370|gb|EWM24077.1| (Beta-glucan synthesis-associated, SKN1 [Nannochloropsis gaditana]) HSP 1 Score: 366.311 bits (939), Expect = 2.589e-128 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT 178
MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT
Sbjct: 1 MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT 178
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|299470105|emb|CBN78134.1| (Beta-1,6-glucan active enzyme, family GH16 [Ectocarpus siliculosus]) HSP 1 Score: 164.851 bits (416), Expect = 2.119e-44 Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 0
Query: 29 AGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
AGW+DPD+P + + SL D L+MSDEF V R+F DGHDP WT+ HSDDA+TS G G+ +YN SY +TT+ G + ITTT E T W+G+NP+ +KYE K +R +MVNTWNKFCF+GG++E KLPG ++G
Sbjct: 107 AGWIDPDTPEAAKTIRSLHDG--AEYELIMSDEFEVNGRSFDDGHDPMWTSTTHSDDAQTSNGLGSQQFYNASYGTTTK-GSMNITTTDESTTWRGYNPYKRKYETLSKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHNIG 245
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|397647464|gb|EJK77715.1| (hypothetical protein THAOC_00435 [Thalassiosira oceanica]) HSP 1 Score: 145.591 bits (366), Expect = 3.482e-38 Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 13 LLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
++ + A S + + GW+D D+P ++ T SL D + + LVMSDEFN+ R+FADGHDPTWTA D SDD ++ G G+L +YN S STT +G L I + E TQW +P +++ +K F+ V +WNKFCF+GG++E L LPG D+G
Sbjct: 5 IIAAMTALSTAPPIVECGWIDEDTPERLRTTKSLVDGS--TYELVMSDEFNIPGRSFADGHDPTWTALDKSDDDYSASGGGSLHFYNSSMVSTTPDGFLTIQSLLETTQWNRHDPIKNEWKQEKKYFKSGNVQSWNKFCFTGGILEVDLILPGEPDIG 160
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|553194947|ref|XP_005856060.1| (beta-glucan synthesis-associated [Nannochloropsis gaditana CCMP526] >gi|422293006|gb|EKU20307.1| beta-glucan synthesis-associated [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 134.42 bits (337), Expect = 2.180e-34 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 109 GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG
Sbjct: 4 GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 65
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|219125231|ref|XP_002182889.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405683|gb|EEC45625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 125.946 bits (315), Expect = 2.799e-30 Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 0
Query: 31 WVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
W+D ++P + T SL D + + LVMSDEFNV RTF DGHDP WTA D SDD +S G G+L +YN S A +TE G LKI T E T W ++ + ++ F MV +WNKFCF+GG+VE + PG +G
Sbjct: 72 WIDIETPLKKRTTKSLVDGS--TYHLVMSDEFNVENRTFKDGHDPMWTALDRSDDDASSAGGGSLQFYNSS-AVSTENGFLKIATYLETTSWTRYDHVNKHWKTERTNFTSGMVQSWNKFCFTGGIVEVDVVFPGEPFIG 208
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1072232347|gb|OEU17079.1| (beta-glucan synthase-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 124.79 bits (312), Expect = 6.908e-30 Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 0
Query: 11 LLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
+L + + A P + ++D D+P + T SL D ++ LVMSDEFN RTF DGHDP WTA D SDD +S G G+ +YN S+ +T +EG LKI+T T W F+ +Y+ F V +W KFCF+GG+VE + LPG +G
Sbjct: 14 MLRIFVAVAVLLPWAVVDGAFIDMDTPLDRRTTKSLVDKSV--YHLVMSDEFNTPNRTFTDGHDPVWTALDRSDDDASSAGGGSQQFYNSSFVTTDDEGMLKISTEIGKTTWTTFDAVKGEYKKTSTLFNSGSVQSWEKFCFTGGIVEVDVILPGDPFIG 171
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1210513569|dbj|GAX27441.1| (hypothetical protein FisN_23Hh095 [Fistulifera solaris]) HSP 1 Score: 122.479 bits (306), Expect = 4.503e-29 Identity = 66/158 (41.77%), Postives = 95/158 (60.13%), Query Frame = 0
Query: 13 LLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
L+L+LA ++ ++D ++P + T SL D + LVMSDEFNV RTF DGHDP WTA D SDD +S G G++ +YN S A TT+ G L+I T E T+W ++ ++++ K F MV +W KFCF+GG+VE + PG + +G
Sbjct: 13 LMLILAIIR----ISSGSFIDIETPLDKRTTTSLIDGT--TYHLVMSDEFNVENRTFKDGHDPLWTALDKSDDDASSAGGGSMQFYNSS-AVTTKNGFLRIGTYLERTEWNRYDHIKKEWKHEIKNFTSGMVQSWEKFCFTGGIVEVDVIFPGEAYIG 163
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1210513753|dbj|GAX27330.1| (hypothetical protein FisN_23Lh095 [Fistulifera solaris]) HSP 1 Score: 120.553 bits (301), Expect = 2.315e-28 Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0
Query: 26 LTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
++ ++D ++P + T SL D + LVMSDEFNV RTF DGHDP WTA D SDD +S G G++ +YN S A TT+ G L+I T E T+W ++ ++++ K F MV +W KFCF+GG+VE + PG + +G
Sbjct: 9 ISSGSFIDIETPLDKRTTTSLIDGT--TYHLVMSDEFNVENRTFKDGHDPLWTALDKSDDDASSAGGGSMQFYNSS-AVTTKNGFLRIATYLERTEWNRYDHIKKEWKHEIKNFTSGMVQSWEKFCFTGGIVEVDVIFPGEAYIG 150
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|219129906|ref|XP_002185118.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403297|gb|EEC43250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 110.153 bits (274), Expect = 8.113e-25 Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 0
Query: 16 LLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPG-PSDVGL 171
LL F S T A WVDPD+ + T L + + + LV SDEF A R FADG DP WTA + +D AL +Y+H A T+ G L ITT + +K FN T+++ +K + M+ +WNKFCF GG+VE S KLPG P GL
Sbjct: 14 LLGGFVVLSNQTDASWVDPDTKQAHLTTQPLANEDNRAYELVFSDEFEQAGRKFADGSDPRWTAINKNDYTNE-----ALHFYSHDNAHTSN-GVLNITTVEKENVYKAFNEHTKQFYADKKYVQSGMLQSWNKFCFVGGIVEFSAKLPGDPHKGGL 164
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1072229426|gb|OEU14161.1| (beta-glucan synthase-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 109.383 bits (272), Expect = 1.601e-24 Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 0
Query: 25 LLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
L +A WVDPD+P + T SL + +LV SDEF R F DG+DP WTA +D + ++Y H + TE G L I T S+ ++ FN T+K+ +K + +M+ +WNKFCF+GG++E S KLPG +G
Sbjct: 30 FLVEASWVDPDTPIKSRITESLLRDDSRQFKLVFSDEFEQDGRNFHDGNDPRWTALHKNDYTNLA------LHYYHRDNAKTENGVLSIKTESKENAYRAFNEKTKKFFNDKKYIQSSMLQSWNKFCFTGGIIEFSAKLPGSPRIG 169 The following BLAST results are available for this feature:
BLAST of EWM24077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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