EWM24077.1, cds6596 (CDS) Nannochloropsis gaditana

Overview
NameEWM24077.1
Unique Namecds6596
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:76564..76887 +
Alignment locationCM002469.1:77106..77285 +
Alignment locationCM002469.1:77329..77361 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24077.1
ProductBeta-glucan synthesis-associated, SKN1
Orig transcript idgnl|cribi|Naga_100644g1.9855.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:76564..76887 +
CM002469.1supercontigCM002469.1:77106..77285 +
CM002469.1supercontigCM002469.1:77329..77361 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
IPR005629SKN1
Homology
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|585105370|gb|EWM24077.1| (Beta-glucan synthesis-associated, SKN1 [Nannochloropsis gaditana])

HSP 1 Score: 366.311 bits (939), Expect = 2.589e-128
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT 178
            MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT
Sbjct:    1 MPTYLPLHPLLLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVGLPTSIPPT 178          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|299470105|emb|CBN78134.1| (Beta-1,6-glucan active enzyme, family GH16 [Ectocarpus siliculosus])

HSP 1 Score: 164.851 bits (416), Expect = 2.119e-44
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 0
Query:   29 AGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            AGW+DPD+P + +   SL D       L+MSDEF V  R+F DGHDP WT+  HSDDA+TS G G+  +YN SY +TT+ G + ITTT E T W+G+NP+ +KYE   K +R +MVNTWNKFCF+GG++E   KLPG  ++G
Sbjct:  107 AGWIDPDTPEAAKTIRSLHDG--AEYELIMSDEFEVNGRSFDDGHDPMWTSTTHSDDAQTSNGLGSQQFYNASYGTTTK-GSMNITTTDESTTWRGYNPYKRKYETLSKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHNIG 245          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|397647464|gb|EJK77715.1| (hypothetical protein THAOC_00435 [Thalassiosira oceanica])

HSP 1 Score: 145.591 bits (366), Expect = 3.482e-38
Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 0
Query:   13 LLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            ++  + A S    + + GW+D D+P  ++ T SL D +  +  LVMSDEFN+  R+FADGHDPTWTA D SDD  ++ G G+L +YN S  STT +G L I +  E TQW   +P   +++  +K F+   V +WNKFCF+GG++E  L LPG  D+G
Sbjct:    5 IIAAMTALSTAPPIVECGWIDEDTPERLRTTKSLVDGS--TYELVMSDEFNIPGRSFADGHDPTWTALDKSDDDYSASGGGSLHFYNSSMVSTTPDGFLTIQSLLETTQWNRHDPIKNEWKQEKKYFKSGNVQSWNKFCFTGGILEVDLILPGEPDIG 160          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|553194947|ref|XP_005856060.1| (beta-glucan synthesis-associated [Nannochloropsis gaditana CCMP526] >gi|422293006|gb|EKU20307.1| beta-glucan synthesis-associated [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 134.42 bits (337), Expect = 2.180e-34
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query:  109 GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG
Sbjct:    4 GHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 65          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|219125231|ref|XP_002182889.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405683|gb|EEC45625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 125.946 bits (315), Expect = 2.799e-30
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 0
Query:   31 WVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            W+D ++P   + T SL D +  +  LVMSDEFNV  RTF DGHDP WTA D SDD  +S G G+L +YN S A +TE G LKI T  E T W  ++   + ++     F   MV +WNKFCF+GG+VE  +  PG   +G
Sbjct:   72 WIDIETPLKKRTTKSLVDGS--TYHLVMSDEFNVENRTFKDGHDPMWTALDRSDDDASSAGGGSLQFYNSS-AVSTENGFLKIATYLETTSWTRYDHVNKHWKTERTNFTSGMVQSWNKFCFTGGIVEVDVVFPGEPFIG 208          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1072232347|gb|OEU17079.1| (beta-glucan synthase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.79 bits (312), Expect = 6.908e-30
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 0
Query:   11 LLLLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            +L + +  A   P  +    ++D D+P   + T SL D ++    LVMSDEFN   RTF DGHDP WTA D SDD  +S G G+  +YN S+ +T +EG LKI+T    T W  F+    +Y+     F    V +W KFCF+GG+VE  + LPG   +G
Sbjct:   14 MLRIFVAVAVLLPWAVVDGAFIDMDTPLDRRTTKSLVDKSV--YHLVMSDEFNTPNRTFTDGHDPVWTALDRSDDDASSAGGGSQQFYNSSFVTTDDEGMLKISTEIGKTTWTTFDAVKGEYKKTSTLFNSGSVQSWEKFCFTGGIVEVDVILPGDPFIG 171          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1210513569|dbj|GAX27441.1| (hypothetical protein FisN_23Hh095 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 4.503e-29
Identity = 66/158 (41.77%), Postives = 95/158 (60.13%), Query Frame = 0
Query:   13 LLLLLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            L+L+LA       ++   ++D ++P   + T SL D    +  LVMSDEFNV  RTF DGHDP WTA D SDD  +S G G++ +YN S A TT+ G L+I T  E T+W  ++   ++++   K F   MV +W KFCF+GG+VE  +  PG + +G
Sbjct:   13 LMLILAIIR----ISSGSFIDIETPLDKRTTTSLIDGT--TYHLVMSDEFNVENRTFKDGHDPLWTALDKSDDDASSAGGGSMQFYNSS-AVTTKNGFLRIGTYLERTEWNRYDHIKKEWKHEIKNFTSGMVQSWEKFCFTGGIVEVDVIFPGEAYIG 163          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1210513753|dbj|GAX27330.1| (hypothetical protein FisN_23Lh095 [Fistulifera solaris])

HSP 1 Score: 120.553 bits (301), Expect = 2.315e-28
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   26 LTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
            ++   ++D ++P   + T SL D    +  LVMSDEFNV  RTF DGHDP WTA D SDD  +S G G++ +YN S A TT+ G L+I T  E T+W  ++   ++++   K F   MV +W KFCF+GG+VE  +  PG + +G
Sbjct:    9 ISSGSFIDIETPLDKRTTTSLIDGT--TYHLVMSDEFNVENRTFKDGHDPLWTALDKSDDDASSAGGGSMQFYNSS-AVTTKNGFLRIATYLERTEWNRYDHIKKEWKHEIKNFTSGMVQSWEKFCFTGGIVEVDVIFPGEAYIG 150          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|219129906|ref|XP_002185118.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403297|gb|EEC43250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 110.153 bits (274), Expect = 8.113e-25
Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 0
Query:   16 LLAAFSPPSLLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPG-PSDVGL 171
            LL  F   S  T A WVDPD+  +   T  L + +  +  LV SDEF  A R FADG DP WTA + +D         AL +Y+H  A T+  G L ITT  +   +K FN  T+++   +K  +  M+ +WNKFCF GG+VE S KLPG P   GL
Sbjct:   14 LLGGFVVLSNQTDASWVDPDTKQAHLTTQPLANEDNRAYELVFSDEFEQAGRKFADGSDPRWTAINKNDYTNE-----ALHFYSHDNAHTSN-GVLNITTVEKENVYKAFNEHTKQFYADKKYVQSGMLQSWNKFCFVGGIVEFSAKLPGDPHKGGL 164          
BLAST of EWM24077.1 vs. NCBI_GenBank
Match: gi|1072229426|gb|OEU14161.1| (beta-glucan synthase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.383 bits (272), Expect = 1.601e-24
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 0
Query:   25 LLTKAGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSELTQWKGFNPFTQKYEIFEKEFRGAMVNTWNKFCFSGGVVEASLKLPGPSDVG 170
             L +A WVDPD+P   + T SL   +    +LV SDEF    R F DG+DP WTA   +D    +      ++Y H   + TE G L I T S+   ++ FN  T+K+   +K  + +M+ +WNKFCF+GG++E S KLPG   +G
Sbjct:   30 FLVEASWVDPDTPIKSRITESLLRDDSRQFKLVFSDEFEQDGRNFHDGNDPRWTALHKNDYTNLA------LHYYHRDNAKTENGVLSIKTESKENAYRAFNEKTKKFFNDKKYIQSSMLQSWNKFCFTGGIIEFSAKLPGSPRIG 169          
The following BLAST results are available for this feature:
BLAST of EWM24077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105370|gb|EWM24077.1|2.589e-128100.00Beta-glucan synthesis-associated, SKN1 [Nannochlor... [more]
gi|299470105|emb|CBN78134.1|2.119e-4452.82Beta-1,6-glucan active enzyme, family GH16 [Ectoca... [more]
gi|397647464|gb|EJK77715.1|3.482e-3844.30hypothetical protein THAOC_00435 [Thalassiosira oc... [more]
gi|553194947|ref|XP_005856060.1|2.180e-34100.00beta-glucan synthesis-associated [Nannochloropsis ... [more]
gi|219125231|ref|XP_002182889.1|2.799e-3046.43predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072232347|gb|OEU17079.1|6.908e-3040.63beta-glucan synthase-like protein [Fragilariopsis ... [more]
gi|1210513569|dbj|GAX27441.1|4.503e-2941.77hypothetical protein FisN_23Hh095 [Fistulifera sol... [more]
gi|1210513753|dbj|GAX27330.1|2.315e-2842.76hypothetical protein FisN_23Lh095 [Fistulifera sol... [more]
gi|219129906|ref|XP_002185118.1|8.113e-2542.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072229426|gb|OEU14161.1|1.601e-2439.04beta-glucan synthase-like protein [Fragilariopsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6612rna6612Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications