rna6608, rna6608 (mRNA) Nannochloropsis gaditana

Overview
Namerna6608
Unique Namerna6608
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1120
Alignment locationCM002469.1:63825..64767 -

Link to JBrowse

Properties
Property NameValue
Productdelta-1-pyrroline-5-carboxylate dehydrogenase 1 protein
Orig transcript idgnl|cribi|Naga_102301g1.7980.mrna
Orig protein idgnl|cribi|Naga_102301g1.7980
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:63825..64767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102301g1gene6388Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24081.1cds6592Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6608rna6608-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6608 ID=rna6608|Name=rna6608|organism=Nannochloropsis gaditana|type=mRNA|length=1120bp
CCGATGCGATTGAGTGAGACGGAGGTGACAGAGGAAGTGATTGCGGCGGC
GGTAGAAGCGCTTCTTTGCGAAAGCGAGGAACAGGAGACCCCGCCCTCCC
TCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCCCCGCTTCCTCCCCC
ACGTCCCCCCCTACCACCCTCATCACCACCCTCGCGCCCACGCCCGTCGC
GGTATCCCCCTCCTTTCCTTCCCCTCCCTCCTCCTCTTCGCCTCCCCCTC
TGTCTCCCTCCACGGCCCAAGAAGTGCCTGCCCTGAACGACGTCAAGGAG
GTGGGGGATGGTGACCGGGAGGACGGGGACGCGCTCCGGCGCTACAAGAT
CCGGACCCTCCTTCTAGAAGAAGAACTTCGGGGCACCCGGCAGTCACTGG
CTAACGTTCTAGAAGGGTTGGGGGAGGCACGAGAGCACGAGTCCTCCCTG
GCCACGGCCCTGGCCCGCGCCCAACGCGCGACGGAGGAGGCGGAGAAGCT
TCTAGAAGAGGAAGGTCGGGGCTACCAGGGGGTGGTGACCGCGCTGACGG
AGGAGTGCCATGCGCTCCAAGGGCAGGTGCAGGAGAAAGAGTTTGCCCGT
TTGCTGGCGGAGGAGGCCACGCAGAAATGGAAAACGCGCTACCGACAGGA
CGTGCGGCAGATGAACGAGGAAGTGCTGGCTCTGGACGAGGTTGTCTACG
GGTTGGAAAAGGAGCAGGAGCGGCGACAAGCGGTGTGGGCGGCCGCCGAG
ATGAAATACAAGCGTCAGCTGTCCGCCATGCGGAAGCGAAATTTGGAGCT
GCAGGAGAAATTGAAGGAGGTAGGTGGGGGGGGAAGAACGGTGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAGGATGTGATGGTGTATTGCCCTCCACAAG
GTTCACGCGACAGTTGTTCAAAGACCTCCGCTCTCTTGTCGCATCCGCTT
TTTCGGCCTTTTTCCCGGGTCAAACTTTTAACGTCACATTTAAATTCAAA
ATTTCAAACCGGGGGACAGATTTCCCTGATGGAGGCGGAGTCTCTGGAAG
TTGTGGACCGGCTCGAGCGGCAGTTGGCGAGCCTTGGGGCTTCTAGCGCA
GGTTACCGAGGAAAGGAGGG
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protein sequence of rna6608

>rna6608-protein ID=rna6608-protein|Name=rna6608|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
GTSLPPSLPPSLPLFLLPSPFPSLPLSLPHLPPFLFSSLFLFLSVLPPLL
SICSDPVSSSLPPSRPPAPPPSRRSPSHTGQKCSAQSILFAHENWQQAGL
ESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGK
ALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFY
IYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYI
GRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVG
EGWTMPGPT
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mRNA from alignment at CM002469.1:63825..64767-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6608 ID=rna6608|Name=rna6608|organism=Nannochloropsis gaditana|type=mRNA|length=943bp|location=Sequence derived from alignment at CM002469.1:63825..64767- (Nannochloropsis gaditana)
GGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACTTTTCCTCCT
TCCCTCTCCCTTCCCTTCCCTCCCCCTCTCCCTCCCTCACCTGCCCCCCT
TCCTCTTCTCTTCCCTGTTTCTCTTCCTGTCTGTGCTCCCTCCTCTCCTT
TCCATCTGCTCTGATCCCGTATCTTCCTCCCTGCCCCCCTCCCGCCCTCC
CGCCCCCCCGCCCTCCCGCCGGTCTCCTTCCCACACAGGACAAAAGTGCT
CGGCGCAATCCATCCTCTTCGCCCACGAAAACTGGCAGCAAGCGGGGCTG
GAATCCAAACTGCGGACCCTAGCCGCCCGTCGCTCCCTCGCCGATTTCAC
ACTCGGCCCGGTCTTGACCGTGACGACGGAGCGTTTCCTCGCCCACTGCC
AAGCGCTCTTGGATACAATCCCGGGGACGAAGATTCTCTGGGGGGGGAAA
GCGTTGAGCAAAGCCGCCATGGCCCCGCACGAGATCCCCACGTGCTACGG
TGCCTTTGAACCGACTGCTGTCTACGTGCCGCTGGAAGGGATGTTGGCCA
GCCCGGACGCCTTCCATCTGGCGACGACCGAGATTTTTGGCCCTTTCTAC
ATTTATACGACCTGGAAAGATGGGGAACTGCCCCTGGTCCTGGAGGCCTT
GGAGCGGATGGAGAACCATTTGACCGCTGCCGTGGTCAGTAACGACGTCG
TCTTCACCCGGGCCGTGGTGGGCTCCACTGTGAACGGCACCACCTACATC
GGTCGCCGTGCCCGAACGACGGGCGCGCCGCAGAACCATTGGTTCGGTCC
CTGCGGGGACCCTCGAGGAGCGGGGATTGGGACGCCGGAGGCCATCAAGA
GCGTTTGGAGTGCGCACCGGGAGGTGGTGACGGACGAAGGGCCTGTGGGG
GAAGGGTGGACGATGCCGGGGCCGACGTGAGGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at CM002469.1:63825..64767-

>rna6608 ID=rna6608|Name=rna6608|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002469.1:63825..64767- (Nannochloropsis gaditana)
GGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACTTTTCCTCCT
TCCCTCTCCCTTCCCTTCCCTCCCCCTCTCCCTCCCTCACCTGCCCCCCT
TCCTCTTCTCTTCCCTGTTTCTCTTCCTGTCTGTGCTCCCTCCTCTCCTT
TCCATCTGCTCTGATCCCGTATCTTCCTCCCTGCCCCCCTCCCGCCCTCC
CGCCCCCCCGCCCTCCCGCCGGTCTCCTTCCCACACAGGACAAAAGTGCT
CGGCGCAATCCATCCTCTTCGCCCACGAAAACTGGCAGCAAGCGGGGCTG
GAATCCAAACTGCGGACCCTAGCCGCCCGTCGCTCCCTCGCCGATTTCAC
ACTCGGCCCGGTCTTGACCGTGACGACGGAGCGTTTCCTCGCCCACTGCC
AAGCGCTCTTGGATACAATCCCGGGGACGAAGATTCTCTGGGGGGGGAAA
GCGTTGAGCAAAGCCGCCATGGCCCCGCACGAGATCCCCACGTGCTACGG
TGCCTTTGAACCGACTGCTGTCTACGTGCCGCTGGAAGGGATGTTGGCCA
GCCCGGACGCCTTCCATCTGGCGACGACCGAGATTTTTGGCCCTTTCTAC
ATTTATACGACCTGGAAAGATGGGGAACTGCCCCTGGTCCTGGAGGCCTT
GGAGCGGATGGAGAACCATTTGACCGCTGCCGTGGTCAGTAACGACGTCG
TCTTCACCCGGGCCGTGGTGGGCTCCACTGTGAACGGCACCACCTACATC
GGTCGCCGTGCCCGAACGACGGGCGCGCCGCAGAACCATTGGTTCGGTCC
CTGCGGGGACCCTCGAGGAGCGGGGATTGGGACGCCGGAGGCCATCAAGA
GCGTTTGGAGTGCGCACCGGGAGGTGGTGACGGACGAAGGGCCTGTGGGG
GAAGGGTGGACGATGCCGGGGCCGACGTGA
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Synonyms
Publications