EWM24081.1, cds6592 (CDS) Nannochloropsis gaditana

Overview
NameEWM24081.1
Unique Namecds6592
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:63838..64767 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24081.1
Productdelta-1-pyrroline-5-carboxylate dehydrogenase 1 protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102301g1.7980.mrna
GbkeyCDS
End range.
End range64767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:63838..64767 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016161Ald_DH/histidinol_DH
IPR016163Ald_DH_C
IPR015590Aldehyde_DH_dom
Homology
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|585105377|gb|EWM24081.1| (delta-1-pyrroline-5-carboxylate dehydrogenase 1 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 GTSLPPSLPPSLPLFLLPSPFPSLPLSLPHLPPFLFSSLFLFLSVLPPLLSICSDPVSSSLPPSRPPAPPPSRRSPSHTGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            GTSLPPSLPPSLPLFLLPSPFPSLPLSLPHLPPFLFSSLFLFLSVLPPLLSICSDPVSSSLPPSRPPAPPPSRRSPSHTGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT
Sbjct:    1 GTSLPPSLPPSLPLFLLPSPFPSLPLSLPHLPPFLFSSLFLFLSVLPPLLSICSDPVSSSLPPSRPPAPPPSRRSPSHTGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|669152720|ref|XP_008611922.1| (aldehyde dehydrogenase [Saprolegnia diclina VS20] >gi|530736274|gb|EQC34516.1| aldehyde dehydrogenase [Saprolegnia diclina VS20])

HSP 1 Score: 304.679 bits (779), Expect = 1.276e-96
Identity = 147/231 (63.64%), Postives = 173/231 (74.89%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +GQKCSAQSILF HENW +AG+E+KL+TLAARR+L + T+GPVLTVTT+R L H   LL  IPG ++++GGK L       H IP+CYGA EPTAVYVPL    A P+ F L TTEIFGPF I T +KDGE+  VL  LERME HLTA+VVSND+ F + ++ +TVNGTTY G RARTTGAPQNHWFGP GDPR   IGTPEAIK VWS HRE++ D GP+   WT P  T
Sbjct:  324 SGQKCSAQSILFMHENWTKAGIEAKLKTLAARRNLDELTIGPVLTVTTKRMLDHVDNLL-KIPGARVVFGGKELKN-----HSIPSCYGAIEPTAVYVPL-AEAAKPENFELVTTEIFGPFQILTEYKDGEVDTVLNMLERMEAHLTASVVSNDIGFQQHILANTVNGTTYNGIRARTTGAPQNHWFGPAGDPRAGAIGTPEAIKLVWSCHREIINDFGPINTSWTTPKAT 547          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|298712221|emb|CBJ33088.1| (Aldehyde Dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 303.523 bits (776), Expect = 2.828e-96
Identity = 149/233 (63.95%), Postives = 178/233 (76.39%), Query Frame = 0
Query:   77 SHTGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +++GQKCSAQSILF HENW ++G+   L++LA+RR+L D T+GPVL+VTTE  + H  +LL  I G K+L+GGK LS  +    +IP  YGA++PTAV+VPL+ ML SP+ F L TTEIFGPF + T + D EL  VLEA ERM NHLTAAVVSNDV F R V+ +TVNGTTY G RARTTGAPQNHWFGP GDPR AGIGT EAI+ VWS HREV+ DEGPV EGWT P  T
Sbjct:  312 AYSGQKCSAQSILFVHENWSKSGILETLKSLASRRTLEDLTVGPVLSVTTETCMKHIDSLL-KISGAKVLFGGKPLS--SEKAKKIPAQYGAWDPTAVFVPLKEMLKSPENFALCTTEIFGPFQVVTEYDDNELDAVLEACERMNNHLTAAVVSNDVSFQRRVLEATVNGTTYCGIRARTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHREVIMDEGPVPEGWTTPART 541          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|1040831233|ref|XP_017229939.1| (PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Daucus carota subsp. sativus])

HSP 1 Score: 303.523 bits (776), Expect = 3.943e-96
Identity = 149/231 (64.50%), Postives = 178/231 (77.06%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +GQKCSAQS+LF HENW Q+ L  +L  LAARR L D T+GPVLTVTTER L H + LL  IPG+K+L+GG+AL     A H+IP+ YGA +PTAV+VPL+ +L   + + L TTEIFGPF I T +KD +L +VL+A+ERM  HLTAAVVSNDV+F + V+GSTVNGTTY G RARTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HREV+ D GP+   W +P  T
Sbjct:  331 SGQKCSAQSMLFMHENWSQSSLVKQLGNLAARRKLEDLTIGPVLTVTTERMLEHLRKLL-KIPGSKLLFGGEAL-----ANHKIPSVYGAIKPTAVFVPLDEILKDGN-YELVTTEIFGPFQIVTEYKDNQLAMVLDAVERMHAHLTAAVVSNDVLFLQEVIGSTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDIGPMPTNWKLPAST 554          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|1072962049|ref|XP_018492000.1| (PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Raphanus sativus])

HSP 1 Score: 303.523 bits (776), Expect = 5.027e-96
Identity = 148/231 (64.07%), Postives = 170/231 (73.59%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +GQKCSAQSILF HENW +  L SKL+ LA RR L D T+GPVLT TTE  L H + LL  IPG+K+L+GGK L       H IP+ YGA EPTAVYVP+E +L     + L T EIFGPF I T +K  +LPLVL+ALERM  HLTAAVVSND +F + V+G+TVNGTTY G R RTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HREV+ D GP+  GW +P  T
Sbjct:  333 SGQKCSAQSILFVHENWSKTSLLSKLKDLAGRRKLEDLTIGPVLTFTTEAMLEHMENLL-KIPGSKLLFGGKPLKN-----HSIPSIYGALEPTAVYVPIEEILKDSKTYELVTKEIFGPFQIVTEYKKDQLPLVLDALERMHAHLTAAVVSNDPIFIQEVIGNTVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPIPHGWELPAST 557          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|1173933920|gb|OQR85456.1| (delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial-like [Achlya hypogyna])

HSP 1 Score: 302.753 bits (774), Expect = 6.863e-96
Identity = 145/231 (62.77%), Postives = 176/231 (76.19%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +GQKCSAQSILF HENW +AG+E+KL+TLAARR+L + T+GPVLTVTT+R L H   LL  IPG ++++GGK L     A H+IP+CYGA EPTAV+VPLE   A P+ F L TTEIFGPF + T +KD ++  VL+ LERME HLTA+VVSNDV F + ++ ++VNGTTY G RARTTGAPQNHWFGP GDPR   IGTPEAIK VWS HRE++ D GP+   WT P  T
Sbjct:  324 SGQKCSAQSILFMHENWTKAGIEAKLKTLAARRNLDELTIGPVLTVTTKRMLDHVDNLL-KIPGARLVFGGKEL-----ANHKIPSCYGAIEPTAVFVPLEEA-AKPENFELVTTEIFGPFQVLTEYKDSQVDTVLDMLERMEAHLTASVVSNDVAFQQHILANSVNGTTYNGIRARTTGAPQNHWFGPAGDPRAGAIGTPEAIKLVWSCHREIINDFGPINTSWTTPKAT 547          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|565430282|ref|XP_006279602.1| (hypothetical protein CARUB_v10026134mg, partial [Capsella rubella] >gi|482548306|gb|EOA12500.1| hypothetical protein CARUB_v10026134mg, partial [Capsella rubella])

HSP 1 Score: 303.523 bits (776), Expect = 9.434e-96
Identity = 149/231 (64.50%), Postives = 171/231 (74.03%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMPGPT 309
            +GQKCSAQS+LF HENW +  L SKL+ LA RR L D T+GPVLT TTE  L H + LL  IPG+K+L+GGK L       H IP+ YGA EPTAVYVP+E +L     + L T EIFGPF I T +K  +LPLVLEALERM  HLTAAVVSND +F + VVG++VNGTTY G R RTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HREV+ D GPV +GW +P  T
Sbjct:  364 SGQKCSAQSMLFVHENWSKTPLLSKLKELAERRKLEDLTIGPVLTFTTEAMLEHMENLLQ-IPGSKLLFGGKELKN-----HSIPSIYGALEPTAVYVPIEEILKDSKTYELVTKEIFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFIQEVVGNSVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPKGWELPSST 588          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|1191011001|ref|XP_020889249.1| (delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 302.368 bits (773), Expect = 1.052e-95
Identity = 147/228 (64.47%), Postives = 170/228 (74.56%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMP 306
            +GQKCSAQS+LF HENW +  L SKL+ LA RR L D T+GPVLT TTE  L H + LL  IPG+K+L+GGK L       H IP+ YGA EPTAVYVP+E +L     + L T EIFGPF I T +K  +LPLVLEALERM  HLTAAVVSND +F + V+G++VNGTTY G R RTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HREV+ D GPV +GW +P
Sbjct:  332 SGQKCSAQSMLFVHENWSKTPLVSKLKELAERRKLEDLTIGPVLTFTTEAMLEHMENLLQ-IPGSKLLFGGKELKN-----HSIPSIYGALEPTAVYVPIEEILKDSKTYELVTKEIFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELP 553          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|731335130|ref|XP_010678575.1| (PREDICTED: probable aldehyde dehydrogenase [Beta vulgaris subsp. vulgaris] >gi|870858912|gb|KMT10376.1| hypothetical protein BVRB_5g115070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 302.368 bits (773), Expect = 1.063e-95
Identity = 150/228 (65.79%), Postives = 175/228 (76.75%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMP 306
            +GQKCSAQSILF HENW Q+ L SKL+ LAARR L D T+GPVLTVTTE  L H + LL  IPG+K+L+GG+ L       H IP+ YGAF+PTAVYVPLE ++   + F L T EIFGPF I T +K  +L +VL+ALERM  HLTAAVVSNDV+F + V+GS+VNGTTY G RARTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HRE++ D GPV   WT+P
Sbjct:  331 SGQKCSAQSILFMHENWSQSPLISKLKDLAARRKLEDLTVGPVLTVTTEAMLEHVKKLL-KIPGSKLLFGGETLEN-----HSIPSVYGAFKPTAVYVPLEEIVKDKN-FELVTKEIFGPFQIITDYKANQLQMVLDALERMHAHLTAAVVSNDVLFLQEVIGSSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPHKWTVP 551          
BLAST of EWM24081.1 vs. NCBI_GenBank
Match: gi|727426223|ref|XP_010458998.1| (PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Camelina sativa])

HSP 1 Score: 302.368 bits (773), Expect = 1.319e-95
Identity = 147/228 (64.47%), Postives = 170/228 (74.56%), Query Frame = 0
Query:   79 TGQKCSAQSILFAHENWQQAGLESKLRTLAARRSLADFTLGPVLTVTTERFLAHCQALLDTIPGTKILWGGKALSKAAMAPHEIPTCYGAFEPTAVYVPLEGMLASPDAFHLATTEIFGPFYIYTTWKDGELPLVLEALERMENHLTAAVVSNDVVFTRAVVGSTVNGTTYIGRRARTTGAPQNHWFGPCGDPRGAGIGTPEAIKSVWSAHREVVTDEGPVGEGWTMP 306
            +GQKCSAQS+LF HENW +  L SKL+ LA RR L D T+GPVLT TTE  L H + LL  IPG+K+L+GGK L       H IP+ YGA EPTAVYVP+E +L     + L T EIFGPF I T +K  +LPLVLEALERM  HLTAAVVSND +F + V+G++VNGTTY G R RTTGAPQNHWFGP GDPRGAGIGTPEAIK VWS HREV+ D GPV +GW +P
Sbjct:  332 SGQKCSAQSMLFVHENWSKTPLVSKLKELAERRKLEDLTIGPVLTFTTEAMLEHMENLLQ-IPGSKLLFGGKELKN-----HSIPSVYGALEPTAVYVPIEEILKDSKTYELVTKEIFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELP 553          
The following BLAST results are available for this feature:
BLAST of EWM24081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105377|gb|EWM24081.1|0.000e+0100.00delta-1-pyrroline-5-carboxylate dehydrogenase 1 pr... [more]
gi|669152720|ref|XP_008611922.1|1.276e-9663.64aldehyde dehydrogenase [Saprolegnia diclina VS20] ... [more]
gi|298712221|emb|CBJ33088.1|2.828e-9663.95Aldehyde Dehydrogenase [Ectocarpus siliculosus][more]
gi|1040831233|ref|XP_017229939.1|3.943e-9664.50PREDICTED: delta-1-pyrroline-5-carboxylate dehydro... [more]
gi|1072962049|ref|XP_018492000.1|5.027e-9664.07PREDICTED: delta-1-pyrroline-5-carboxylate dehydro... [more]
gi|1173933920|gb|OQR85456.1|6.863e-9662.77delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
gi|565430282|ref|XP_006279602.1|9.434e-9664.50hypothetical protein CARUB_v10026134mg, partial [C... [more]
gi|1191011001|ref|XP_020889249.1|1.052e-9564.47delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
gi|731335130|ref|XP_010678575.1|1.063e-9565.79PREDICTED: probable aldehyde dehydrogenase [Beta v... [more]
gi|727426223|ref|XP_010458998.1|1.319e-9564.47PREDICTED: delta-1-pyrroline-5-carboxylate dehydro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6608rna6608Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications