rna6605, rna6605 (mRNA) Nannochloropsis gaditana

Overview
Namerna6605
Unique Namerna6605
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1065
Alignment locationCM002469.1:58252..58996 +

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Properties
Property NameValue
Productperoxin pex14
Orig transcript idgnl|cribi|Naga_101551g1.9485.mrna
Orig protein idgnl|cribi|Naga_101551g1.9485
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:58252..58996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101551g1gene6385Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6605rna6605-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24084.1cds6589Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6605 ID=rna6605|Name=rna6605|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp
ACGTGCAGTGAACAATGGACATGTTGGGAGGTAAACGTGATCCTTGTGGT
TTTTTTTATATATTTCCCCTGGTCAAGACCTGGCGCCTCTGCCTGTGAGT
CTCGAGGTGGAAGGTAATTGACACTACCTAGGCTTTTTCCTACTTGCTTT
TCAACAACATATCTCGAGCTCCGTCCTCCACCTAATCCTTGCCCACTACC
TTCAGAGCAGGCATGAATTTTTCTCCACCCCTGTGGGTGCTGCCGCTCTT
GCTGCTTGCCGCCTCCCCGGTCTTCGCCTTCCTCCTGCCCCATCCCTCCA
CTCTCCCTCTTGCCGACCGCAGACCCGGCGAATGCCGGACACAGGTACTA
CCACCCGTTGTCACGTCTCGAAAACCCTTGATTTTCTGTCTTTTTTTTCT
TCATCGGGTCGCCCCGTTCCACCTTGCTTGCGTCATAGCATCTGACGTCT
TCCTCCCTGGTCCCTCAGGCCATGGGAGAGAGGAGACAGGGTGATCCGGT
CACCTCCCTCCCGCCTTCCCTTCCTCCCTCCTTGCCGTCCCACCTCCTTC
AAGCCCCACGGGCCTTGCAACAGCACCTCGCGAAAATGATCTTGTCGCTC
TCCTTCCTTCTCCCCACTGCCTGCGGGATCTCTGCGGGCATGGCCCCTCC
CTTCGTGCCCGTAGCGCGTGCCGAGGAGGTCAACCTGCTCGAGCAGCTGG
AGGCATTGAACAAGCAGGTCGTGCTCCAAGATAAATTGCTCCGAATGGGC
GAAAGCAAATTTGAGCGACGCCTTCCTACCTTCCCGCTGATCAAGGACGG
GGTGCGTCTCGACAAGGAGACCGTCAAGAACGCGATCGATCGCATTCAAG
TCCTAAATGCCTACTTGGACGAGGTGATGAAAAACCTCCCTCCCTCCCTC
CTTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCCTGTTGGTCGCCTCC
CTTCTCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTT
CCTCCCTCTCCCTTCCTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCC
TGTTGATCGCCTCCC
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protein sequence of rna6605

>rna6605-protein ID=rna6605-protein|Name=rna6605|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLE
KKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPT
PYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYRPSRRP
FKPKLKLSPPWLKPQSGTGRISIPF
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mRNA from alignment at CM002469.1:58252..58996+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6605 ID=rna6605|Name=rna6605|organism=Nannochloropsis gaditana|type=mRNA|length=745bp|location=Sequence derived from alignment at CM002469.1:58252..58996+ (Nannochloropsis gaditana)
ATGGACTCGGACTCCATGCCAGCTACCTCGGCTGCAAAGCCTTCTGGTAC
GACGCCGCTTCGTGAAGACTTTATCACGAACGGCGTTTCGTTCTTACGAC
ATCCCAACGTCCAACAAGCACCGCTCTCTCAACGCATCACCTTtttggag
aaaaaggggttGACGCAGGAGGAAATCACGGAAGCTTTTACAAGAGCCAA
GAATGGCTTGGAAAGCAGCCTTCCATTCCACAGCTCCAGCACGCCTGCTA
ACAACACTagcaccacccctcccacccatttttctccccctcctccgacg
cCTTACGCCGCGACGGAaccccttccatctccgcccGAGCCTGTGGGAAT
GTGGAACCAAGGCTTCGGATACACGGTGCCTGGCGCGGTGGTAGCCGGGC
TGGCTATTGGGGCAGGCATTACCCATTTGTATCGGTACCGACACCACCAA
GAGCTCATGCAGCAAGCACAGGAGGAGCAACGGCGCCAAGAAGCGGACGC
GGACGCGGACGCAGCGGCACGACAAGCACAGGAATCTCTGGAAAGagatg
agggggggggaggagacgtgcGGGCCGTGCGCTTCCAGGAGTCGGAGTAT
CTCGTGGCTAGAGGGGACGCAcattccctgccccccgcttcttccctgcA
GGCCATCGCGGAGGCCATTCAAGCCCAAGCTCAAGCTCTCACCGCCTTGG
CTGAAGCCTCAGAGCGGAACCGGCAGGATTTCCATTCCCTTCTGA
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Coding sequence (CDS) from alignment at CM002469.1:58252..58996+

>rna6605 ID=rna6605|Name=rna6605|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002469.1:58252..58996+ (Nannochloropsis gaditana)
ATGGACTCGGACTCCATGCCAGCTACCTCGGCTGCAAAGCCTTCTGGTAC
GACGCCGCTTCGTGAAGACTTTATCACGAACGGCGTTTCGTTCTTACGAC
ATCCCAACGTCCAACAAGCACCGCTCTCTCAACGCATCACCTTtttggag
aaaaaggggttGACGCAGGAGGAAATCACGGAAGCTTTTACAAGAGCCAA
GAATGGCTTGGAAAGCAGCCTTCCATTCCACAGCTCCAGCACGCCTGCTA
ACAACACTagcaccacccctcccacccatttttctccccctcctccgacg
cCTTACGCCGCGACGGAaccccttccatctccgcccGAGCCTGTGGGAAT
GTGGAACCAAGGCTTCGGATACACGGTGCCTGGCGCGGTGGTAGCCGGGC
TGGCTATTGGGGCAGGCATTACCCATTTGTATCGGCCATCGCGGAGGCCA
TTCAAGCCCAAGCTCAAGCTCTCACCGCCTTGGCTGAAGCCTCAGAGCGG
AACCGGCAGGATTTCCATTCCCTTCTGAATGGACTCGGACTCCATGCCAG
CTACCTCGGCTGCAAAGCCTTCTGGTACGACGCCGCTTCGTGAAGACTTT
ATCACGAACGGCGTTTCGTTCTTACGACATCCCAACGTCCAACAAGCACC
GCTCTCTCAACGCATCACCTTtttggagaaaaaggggttGACGCAGGAGG
AAATCACGGAAGCTTTTACAAGAGCCAAGAATGGCTTGGAAAGCAGCCTT
CCATTCCACAGCTCCAGCACGCCTGCTAACAACACTagcaccacccctcc
cacccatttttctccccctcctccgacgcCTTACGCCGCGACGGAacccc
ttccatctccgcccGAGCCTGTGGGAATGTGGAACCAAGGCTTCGGATAC
ACGGTGCCTGGCGCGGTGGTAGCCGGGCTGGCTATTGGGGCAGGCATTAC
CCATTTGTATCGGCCATCGCGGAGGCCATTCAAGCCCAAGCTCAAGCTCT
CACCGCCTTGGCTGAAGCCTCAGAGCGGAACCGGCAGGATTTCCATTCCC
TTCTGA
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Synonyms
Publications