EWM24084.1, cds6589 (CDS) Nannochloropsis gaditana

Overview
NameEWM24084.1
Unique Namecds6589
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:58252..58685 +
Alignment locationCM002469.1:58903..58996 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24084.1
Productperoxin pex14
Orig transcript idgnl|cribi|Naga_101551g1.9485.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:58252..58685 +
CM002469.1supercontigCM002469.1:58903..58996 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0016560protein import into peroxisome matrix, docking
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005777peroxisome
GO:0005778peroxisomal membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR025655PEX14
IPR006785Pex14_N
Homology
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|585105384|gb|EWM24084.1| (peroxin pex14 [Nannochloropsis gaditana])

HSP 1 Score: 350.517 bits (898), Expect = 4.445e-122
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYRPSRRPFKPKLKLSPPWLKPQSGTGRISIPF 175
            MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYRPSRRPFKPKLKLSPPWLKPQSGTGRISIPF
Sbjct:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYRPSRRPFKPKLKLSPPWLKPQSGTGRISIPF 175          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|553194928|ref|XP_005856055.1| (peroxin-14, partial [Nannochloropsis gaditana CCMP526] >gi|422293001|gb|EKU20302.1| peroxin-14, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 301.212 bits (770), Expect = 5.024e-101
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYR 145
            MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYR
Sbjct:    1 MDSDSMPATSAAKPSGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYR 145          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|1178059234|gb|ORE13875.1| (hypothetical protein BCV71DRAFT_59897 [Rhizopus microsporus])

HSP 1 Score: 74.3294 bits (181), Expect = 9.814e-14
Identity = 53/137 (38.69%), Postives = 69/137 (50.36%), Query Frame = 0
Query:   15 SGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTT--------------PPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIG 137
            + T  LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA +    SL   S++T ANN +T               P   + P PPTP    E + +    +GM    FG T   AV+  L + 
Sbjct:   17 TSTITLREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNNTHSL---STTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAEKVFALAVVLGM--SAFGLT--AAVIGILKVS 146          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|729700178|emb|CEJ02789.1| (hypothetical protein RMCBS344292_16784 [Rhizopus microsporus])

HSP 1 Score: 75.0998 bits (183), Expect = 4.612e-13
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 0
Query:   15 SGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTT--------------PPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGL 134
            + T  LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA +    SL   S++T ANN +T               P   + P PPTP    E + +    +GM    FG T   A V G+
Sbjct:   17 TSTITLREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNNTHSL---STTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAEKVFALAVVLGM--SAFGLT---AAVIGI 142          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|298714014|emb|CBJ27246.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.8702 bits (185), Expect = 6.499e-13
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 0
Query:   20 LREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGLAIGAGITHLYRPSR 148
            +RED I NGV+FL HP  + APLSQRI+FLE KGLT EEI+ A +RA+ G +S+    S++   N+  ++     S     P  A+ PL         W Q     VPG +  G A+GA +   Y  SR
Sbjct:    1 MREDQIVNGVNFLVHPKAKTAPLSQRISFLENKGLTAEEISAALSRAEGGEDSN---GSATAGGNSGLSSTSASSSGSSAFPAEASIPL---------WRQ---VAVPGVLAMG-AVGA-LGTYYAASR 112          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|729701047|emb|CEJ02005.1| (hypothetical protein RMCBS344292_16024 [Rhizopus microsporus])

HSP 1 Score: 74.3294 bits (181), Expect = 7.368e-13
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 0
Query:   15 SGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTT--------------PPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGL 134
            + T  LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA +    SL   S++T ANN +T               P   + P PPTP    E + +    +GM    FG T   A V G+
Sbjct:   17 TSTITLREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNNTHSL---STTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAERVFALAVVLGM--SAFGLT---AAVIGI 142          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|727152472|emb|CEG64970.1| (hypothetical protein RMATCC62417_01857 [Rhizopus microsporus])

HSP 1 Score: 72.4034 bits (176), Expect = 3.900e-12
Identity = 52/134 (38.81%), Postives = 67/134 (50.00%), Query Frame = 0
Query:   15 SGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTT--------------PPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGL 134
            + T  LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA +    SL   S++T ANN +T               P   + P PPTP    E + +    + M    FG T   A V G+
Sbjct:   17 TSTITLREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNNTHSL---STTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAEKVFALAVVLSM--SAFGLT---AAVIGI 142          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|1178047041|gb|ORE02763.1| (hypothetical protein BCV72DRAFT_184746, partial [Rhizopus microsporus var. microsporus])

HSP 1 Score: 66.2402 bits (160), Expect = 6.382e-11
Identity = 47/120 (39.17%), Postives = 59/120 (49.17%), Query Frame = 0
Query:   20 LREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRA-KNGLESSLPFHSSSTPANNT----------STTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPG 128
            LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA  N   S     S++  A NT          +  P   + P PPTP    E + +    +GM   G    V G
Sbjct:    1 LREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNTTHSLSTTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAEKVFALAVVLGMSAFGLTAAVIG 120          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|928520072|ref|XP_014078833.1| (hypothetical protein COCC4DRAFT_168796 [Bipolaris maydis ATCC 48331] >gi|451996893|gb|EMD89359.1| hypothetical protein COCHEDRAFT_1141504 [Bipolaris maydis C5] >gi|477587844|gb|ENI04924.1| hypothetical protein COCC4DRAFT_168796 [Bipolaris maydis ATCC 48331])

HSP 1 Score: 69.707 bits (169), Expect = 6.661e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0
Query:   20 LREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRAKNGLESSLPFHSSSTPANNTSTTPPTHFSPPPPTPYAA 104
            +RED IT+ VSFL+ P+V  APL +RI FL+ K LTQEEI  +  RA        P   +S  A+N S      + PPP  PYA+
Sbjct:    2 VREDLITSAVSFLQDPSVASAPLEKRIAFLQSKNLTQEEIDVSLARAAEDGGQPPPPPQTSAVASNAS------YRPPPAAPYAS 80          
BLAST of EWM24084.1 vs. NCBI_GenBank
Match: gi|727137901|emb|CEG79341.1| (hypothetical protein RMATCC62417_13824 [Rhizopus microsporus])

HSP 1 Score: 67.0106 bits (162), Expect = 1.842e-10
Identity = 51/131 (38.93%), Postives = 65/131 (49.62%), Query Frame = 0
Query:   15 SGTTPLREDFITNGVSFLRHPNVQQAPLSQRITFLEKKGLTQEEITEAFTRA-KNGLESSLPFHSSSTPANNT----------STTPPTHFSPPPPTPYAATEPLPSPPEPVGMWNQGFGYTVPGAVVAGL 134
            + T  LRED +   VSFL  PNVQ A  +++I FL+KKGLTQ EI EAF RA  N   S     S++  A NT          +  P   + P PPTP    E + +    +GM    FG T   A V G+
Sbjct:   17 TSTITLREDMLKPAVSFLTSPNVQSADKAKKIAFLQKKGLTQAEIDEAFKRAGDNTTHSLSTTTSANNNATNTIASRPMVPPRTQAPQIIYQPLPPTPSMPAEKVFALAVVLGM--SAFGLT---AAVIGI 142          
The following BLAST results are available for this feature:
BLAST of EWM24084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105384|gb|EWM24084.1|4.445e-122100.00peroxin pex14 [Nannochloropsis gaditana][more]
gi|553194928|ref|XP_005856055.1|5.024e-101100.00peroxin-14, partial [Nannochloropsis gaditana CCMP... [more]
gi|1178059234|gb|ORE13875.1|9.814e-1438.69hypothetical protein BCV71DRAFT_59897 [Rhizopus mi... [more]
gi|729700178|emb|CEJ02789.1|4.612e-1339.55hypothetical protein RMCBS344292_16784 [Rhizopus m... [more]
gi|298714014|emb|CBJ27246.1|6.499e-1340.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|729701047|emb|CEJ02005.1|7.368e-1339.55hypothetical protein RMCBS344292_16024 [Rhizopus m... [more]
gi|727152472|emb|CEG64970.1|3.900e-1238.81hypothetical protein RMATCC62417_01857 [Rhizopus m... [more]
gi|1178047041|gb|ORE02763.1|6.382e-1139.17hypothetical protein BCV72DRAFT_184746, partial [R... [more]
gi|928520072|ref|XP_014078833.1|6.661e-1144.71hypothetical protein COCC4DRAFT_168796 [Bipolaris ... [more]
gi|727137901|emb|CEG79341.1|1.842e-1038.93hypothetical protein RMATCC62417_13824 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6605rna6605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications