rna6604, rna6604 (mRNA) Nannochloropsis gaditana

Overview
Namerna6604
Unique Namerna6604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2168
Alignment locationCM002469.1:53632..55154 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101400g1.4613.mrna
Orig protein idgnl|cribi|Naga_101400g1.4613
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:53632..55154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101400g1gene6384Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6604rna6604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24085.1cds6588Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6604 ID=rna6604|Name=rna6604|organism=Nannochloropsis gaditana|type=mRNA|length=2168bp
ATGCATCAAGAGGAGGTTCAGGCACTGGGTGCTCAACGCCAACGGCTCGA
AGCTCAGGGGACGCTTCTTCCTCCCTACCGGCTCCCATTCCACCACTACC
TTCCTCCGCTTCCTCCCTTTGCCCTTCACCCCTCCTTCCGCCCTGCCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCACCTGCCCTCCCTCCAACCGTGCCA
ACCGCGCCGCCCTCGCCTCTTCTCGCTCCCGGAGCATCCTCCGCGCGGTC
GCAAAGGGACCGCACCATTCCTCTTTCCCTTCTCCCTCCTCCTCTTTCCC
TTTCTTCCTCCGCCCTTCCAACAACGGCATGGGCAGGGAGGACCTCAGAG
ACCTCCCTCCCTCCCTCCCTCCCTCCGCCCCTCCCTCCGCCCCTCCTTCG
CCCCTCCCACCTCCCTCCCCACCCGGCACGACCCGATCCTGGGCATCTGC
GCGCGCGAAAAAGGCCGCCCGATTCTCAGCCACACGTCGCATCGAGGCTT
TCCGAGCGCCCTCCTGCGGCTTTCGGCCCCCAGCAACCTCGCCCCTGGAC
GCCGCGTCTCTAGCCGCCCTTCTCTCCGGCGTCTCCTTCGTCTTCCCTTT
ACGCTCCTCCTTCTCTTTATCTTCTTCTTCCTCCTCTTCCTTCAGCACCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCATCTTGGAAGTGGATCCC
AAGCTGCTCCGAAGCCGCCGTCTGCCCCCGGCACTCCCCTCGTCCACCGT
GGCGCCCGAGGAAGAAACGGGAAAGGAGGAGGAAGAGGAGGAGGAGCAGG
TAGGGGAGGAGACCTCCTTTTTCACTCCGTTGCCGCCCACCCAGTGCCGC
TCTTCCTGTTGACTCGGTGTCAAAGTTTTCTCGTCGTCCTCCTCCTCCCG
CACACGGGCAACACCGTTTCCTTTCCTATTCACAGACGATGAAGAGGAGC
TGGACTTTTTGTTGGCCATTCCCGGTGGATATTTGAGTCTCTGTGTGTGA
AAAGGTAACAGGAAACGTGAGTGTGGCATGCCGATGTCGTGGGGAGGAGG
TAGAAGCGTGCGTGGTTGATGACCACGCGGTAGGCCTCAATACAACCACA
CAAAGAGGCATCGGGAAGCGCTGCGGGAGAACCAAGACGCACATGTTCTA
CCTCAGTCTTGCCTACGGCTGAGGGTCCGTGGCCGCGGACGCTTATGAGG
GAATATAGCAAATATATTACATGATAGGCTCGAGGAATGGATTCACACCC
GCAGATTACTACTAGCGGCTGGCATACGAGTCTTTCCTCTTAGAGGTGAA
TCCTTTCGGACGAAAACCACGAGACCAGTGGAGAACACCAAGCCCACGTG
AGCACGAGGCATCAAGACGCGCTTTTTGAGGCGTCCCTCCGCTCGTCTCG
GTTCCTTCTAGTGGTGTCGATAAGCCAGCGAGAAGGCTCGCTTAAGCCTC
TTCAAACTTACAAGGCGTGAATCTATGTCCATGTACGAAGGTGGGATAAG
TTTGTGGCAGTCCTTTGCCCTGCACGCGGTGTGTCAACACACTTAAGACA
GACGCCTTTGATTTCACCTTACAACCTTGTCTTTGTGACCTGCTCTTGTG
TAAATTCGTCCTATCTCCGAATAAAGGCGAGGAACAAGGGTCCAGTGCCA
ACGGGCTTAGGCTGTCCACTTGCACGCGCATATACACGGAAATGGGTAGC
ATTTTCAAATTTGCAGGCTACCATACATGTGAGAATGGAACATTGCCTGT
CTTTGCTTCATGAAACCCTTTATTTTCATTGTCCATGATCCAGACTGGGA
GGATGCCTCGTCTTCTCTTTTCCTTCCTCCCCTTCCTATACCTCGCGGCC
GTCCTCCTACCGCTGCCAACCAAAGCCTTGTATTCTGCTCGTTCTGATGT
GGTGCAACTGACGGAGGAAAATTTCAAGGAAAAAGTGCTCAAGGCCGAAG
GTGTGGTGCTGGTGGAATTCTACGCAGCTTGGTGTGGACACTGCAAGAAC
CTGGTGCCCGAGTGGGAGAAAGCTGCGCAGGCCTTGAAAGGAGTGGTGAC
GGTGGCGGCCGTGGATGCCTCAGTTCATCAAGCTCTGGGTCAGAAATACG
ACGTCAAGGGCTTCCCCACGATCAAGGTCTTCGGGGGCGACAAGCGGAAG
CCGGTCGACTATCAGGTA
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protein sequence of rna6604

>rna6604-protein ID=rna6604-protein|Name=rna6604|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTA
CGISAGMAPPFVPVARAEEVNLLEQLEALNKQVVLQDKLLRMGESKFERR
LPTFPLIKDGVRLDKETVKNAIDRIQVLNAYLDEVMKNLPPSLLPSLSSS
SHPSPCWSPPFSSFLPPSLPPSLPLPSSLSLPPSLSSSSHPSPC
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mRNA from alignment at CM002469.1:53632..55154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6604 ID=rna6604|Name=rna6604|organism=Nannochloropsis gaditana|type=mRNA|length=1523bp|location=Sequence derived from alignment at CM002469.1:53632..55154- (Nannochloropsis gaditana)
ACGTGCAGTGAACAATGGACATGTTGGGAGGTAAACGTGATCCTTGTGGT
TTTTTTTATATATTTCCCCTGGTCAAGACCTGGCGCCTCTGCCTGTGAGT
CTCGAGGTGGAAGGTAATTGACACTACCTAGGCTTTTTCCTACTTGCTTT
TCAACAACATATCTCGAGCTCCGTCCTCCACCTAATCCTTGCCCACTACC
TTCAGAGCAGGCATGAATTTTTCTCCACCCCTGTGGGTGCTGCCGCTCTT
GCTGCTTGCCGCCTCCCCGGTCTTCGCCTTCCTCCTGCCCCATCCCTCCA
CTCTCCCTCTTGCCGACCGCAGACCCGGCGAATGCCGGACACAGGTACTA
CCACCCGTTGTCACGTCTCGAAAACCCTTGATTTTCTGTCTTTTTTTTCT
TCATCGGGTCGCCCCGTTCCACCTTGCTTGCGTCATAGCATCTGACGTCT
TCCTCCCTGGTCCCTCAGGCCATGGGAGAGAGGAGACAGGGTGATCCGGT
CACCTCCCTCCCGCCTTCCCTTCCTCCCTCCTTGCCGTCCCACCTCCTTC
AAGCCCCACGGGCCTTGCAACAGCACCTCGCGAAAATGATCTTGTCGCTC
TCCTTCCTTCTCCCCACTGCCTGCGGGATCTCTGCGGGCATGGCCCCTCC
CTTCGTGCCCGTAGCGCGTGCCGAGGAGGTCAACCTGCTCGAGCAGCTGG
AGGCATTGAACAAGCAGGTGAGGAGGTCTGCTCGGGGATGGATAGGCGAC
GGGCGGGACGACGGTGGAGGTGACGTTGAGAGACGAGGTGGCTTTTCTCC
AGCCAACCCTTGTCCTCATTCCCTCCCTCCCTGCCTGCCTCCCTCCCTCC
CTCCCTTCCGTCGTTCCTTTTTCCCCCCTCCCTCCCTCCCTTTAGGTCGT
GCTCCAAGATAAATTGCTCCGAATGGGCGAAAGCAAATTTGAGCGACGCC
TTCCTACCTTCCCGGTGCGTGAAGGAAGGAAGGAAGGAAGGAAGGAAGGG
AGGGAGGGAGGGAGGGAGGGTAGGGGGCCTTTAGAGGGGGCCGAACGAGG
ATGAGAACAGCGATGGATGGACTGGCATCTCCGGGAGACAAGGACTTCTC
CCTCATCATCATACTCCTCCTCATCCTTCTCCCCCTCCTCTTCCTCCCTC
CTCCTTCCTCCCTCCTCCTTCCTCCCTCCTCCTTCCTCCCTCTTCCTCCT
TCCTCCCTCCCCATCACCCTTTCTGCCCACCACCCTCCCTCCAGCTGATC
AAGGACGGGGTGCGTCTCGACAAGGAGACCGTCAAGAACGCGATCGATCG
CATTCAAGTCCTAAATGCCTACTTGGACGAGGTGATGAAAAACCTCCCTC
CCTCCCTCCTTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCCTGTTGG
TCGCCTCCCTTCTCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTCCCTTCCTCCCTCTCCCTTCCTCCCTCCCTCTCCTCCTCATCCCATC
CCTCACCCTGTTGATCGCCTCCC
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Coding sequence (CDS) from alignment at CM002469.1:53632..55154-

>rna6604 ID=rna6604|Name=rna6604|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002469.1:53632..55154- (Nannochloropsis gaditana)
CTGATCAAGGACGGGGTGCGTCTCGACAAGGAGACCGTCAAGAACGCGAT
CGATCGCATTCAAGTCCTAAATGCCTACTTGGACGAGGTGATGAAAAACC
TCCCTCCCTCCCTCCTTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCC
TGTTGGTCGCCTCCCTTCTCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCTCCCTTCCTCCCTCTCCCTTCCTCCCTCCCTCTCCTCCTCAT
CCCATCCCTCACCCTGTTGAGTCGTGCTCCAAGATAAATTGCTCCGAATG
GGCGAAAGCAAATTTGAGCGACGCCTTCCTACCTTCCCGATGGGAGAGAG
GAGACAGGGTGATCCGGTCACCTCCCTCCCGCCTTCCCTTCCTCCCTCCT
TGCCGTCCCACCTCCTTCAAGCCCCACGGGCCTTGCAACAGCACCTCGCG
AAAATGATCTTGTCGCTCTCCTTCCTTCTCCCCACTGCCTGCGGGATCTC
TGCGGGCATGGCCCCTCCCTTCGTGCCCGTAGCGCGTGCCGAGGAGGTCA
ACCTGCTCGAGCAGCTGGAGGCATTGAACAAGCAGCTGATCAAGGACGGG
GTGCGTCTCGACAAGGAGACCGTCAAGAACGCGATCGATCGCATTCAAGT
CCTAAATGCCTACTTGGACGAGGTGATGAAAAACCTCCCTCCCTCCCTCC
TTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCCTGTTGGTCGCCTCCC
TTCTCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTTC
CTCCCTCTCCCTTCCTCCCTCCCTCTCCTCCTCATCCCATCCCTCACCCT
GTTGAGTCGTGCTCCAAGATAAATTGCTCCGAATGGGCGAAAGCAAATTT
GAGCGACGCCTTCCTACCTTCCCGATGGGAGAGAGGAGACAGGGTGATCC
GGTCACCTCCCTCCCGCCTTCCCTTCCTCCCTCCTTGCCGTCCCACCTCC
TTCAAGCCCCACGGGCCTTGCAACAGCACCTCGCGAAAATGATCTTGTCG
CTCTCCTTCCTTCTCCCCACTGCCTGCGGGATCTCTGCGGGCATGGCCCC
TCCCTTCGTGCCCGTAGCGCGTGCCGAGGAGGTCAACCTGCTCGAGCAGC
TGGAGGCATTGAACAAGCAGCTGATCAAGGACGGGGTGCGTCTCGACAAG
GAGACCGTCAAGAACGCGATCGATCGCATTCAAGTCCTAAATGCCTACTT
GGACGAGGTGATGAAAAACCTCCCTCCCTCCCTCCTTCCCTCCCTCTCCT
CCTCATCCCATCCCTCACCCTGTTGGTCGCCTCCCTTCTCTTCCTTCCTT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTTCCTCCCTCTCCCTTCC
TCCCTCCCTCTCCTCCTCATCCCATCCCTCACCCTGTTGAGTCGTGCTCC
AAGATAAATTGCTCCGAATGGGCGAAAGCAAATTTGAGCGACGCCTTCCT
ACCTTCCCGATGGGAGAGAGGAGACAGGGTGATCCGGTCACCTCCCTCCC
GCCTTCCCTTCCTCCCTCCTTGCCGTCCCACCTCCTTCAAGCCCCACGGG
CCTTGCAACAGCACCTCGCGAAAATGATCTTGTCGCTCTCCTTCCTTCTC
CCCACTGCCTGCGGGATCTCTGCGGGCATGGCCCCTCCCTTCGTGCCCGT
AGCGCGTGCCGAGGAGGTCAACCTGCTCGAGCAGCTGGAGGCATTGAACA
AGCAG
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Synonyms
Publications