EWM24085.1, cds6588 (CDS) Nannochloropsis gaditana

Overview
NameEWM24085.1
Unique Namecds6588
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:54438..54683 -
Alignment locationCM002469.1:54191..54259 -
Alignment locationCM002469.1:53641..53910 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24085.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101400g1.4613.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:54438..54683 -
CM002469.1supercontigCM002469.1:54191..54259 -
CM002469.1supercontigCM002469.1:53641..53910 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24085.1 vs. NCBI_GenBank
Match: gi|585105387|gb|EWM24085.1| (hypothetical protein Naga_101400g1 [Nannochloropsis gaditana])

HSP 1 Score: 374.015 bits (959), Expect = 7.658e-131
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 
Query:    1 MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALNKQVVLQDKLLRMGESKFERRLPTFPLIKDGVRLDKETVKNAIDRIQVLNAYLDEVMKNLPPSLLPSLSSSSHPSPCWSPPFSSFLPPSLPPSLPLPSSLSLPPSLSSSSHPSPC 194
            MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALNKQVVLQDKLLRMGESKFERRLPTFPLIKDGVRLDKETVKNAIDRIQVLNAYLDEVMKNLPPSLLPSLSSSSHPSPCWSPPFSSFLPPSLPPSLPLPSSLSLPPSLSSSSHPSPC
Sbjct:    1 MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALNKQVVLQDKLLRMGESKFERRLPTFPLIKDGVRLDKETVKNAIDRIQVLNAYLDEVMKNLPPSLLPSLSSSSHPSPCWSPPFSSFLPPSLPPSLPLPSSLSLPPSLSSSSHPSPC 194
[Close]
BLAST of EWM24085.1 vs. NCBI_GenBank
Match: gi|553194954|ref|XP_005856062.1| (hypothetical protein NGA_0318900, partial [Nannochloropsis gaditana CCMP526] >gi|422293008|gb|EKU20309.1| hypothetical protein NGA_0318900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.762 bits (395), Expect = 8.800e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 
Query:    1 MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALN 80
            MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALN
Sbjct:   56 MGERRQGDPVTSLPPSLPPSLPSHLLQAPRALQQHLAKMILSLSFLLPTACGISAGMAPPFVPVARAEEVNLLEQLEALN 135
The following BLAST results are available for this feature:
BLAST of EWM24085.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105387|gb|EWM24085.1|7.658e-131100.00hypothetical protein Naga_101400g1 [Nannochloropsi... [more]
gi|553194954|ref|XP_005856062.1|8.800e-46100.00hypothetical protein NGA_0318900, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6604rna6604Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications