rna660, rna660 (mRNA) Nannochloropsis gaditana

Overview
Namerna660
Unique Namerna660
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1364
Alignment locationCM002456.1:101957..102779 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100802g3.3722.mrna
Orig protein idgnl|cribi|Naga_100802g3.3722
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:101957..102779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100802g3gene633Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna660rna660-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30013.1cds660Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna660 ID=rna660|Name=rna660|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp
CGAAGCTTCCCTTTTGATGCTTTTTACCCCGAGAAAGAGGTGTTGATGCC
TTCGCAGTCCAGCGAAGCATCGGATACGCACATTTAGAGTTGCGAGGGAT
TTATGGTTTCGGTATGCGTGCTTTATATGGGGTACACTTATCGTTTGTGT
GGAAGGCAGGTTTATCGCAGCTCGAACGCAACTACAGGAGCAGGACCCTT
CCTTTCCAAACTTTTGTAAGGGTAGCACGCACCAATTTTGGTTCACAACA
GTAGTCCACCGATATACACGAAGAAAGTGTCGGCGTTTGATTCACCGTCC
CTCTCAGCAATATCTTGTTTTTTGTGATGGACTGTGTAAGGGGTGCTCTT
TCCTCTTAACCTCCCCCCCCCGTCCGGAGTGGAAAATAGGAGTGCTTAGG
TATCAAAGACAATATGAGTGATTAGTATTACGGGTTGAGAATAAGCACAA
CACGCCTCCGTTATTTCTTCTTCCTTACAAACCAGCCGGACAAGCCCCTG
CATCCATGAGGCAACCTGGGGAATCCAGCAAGCAATGGTAGCATGAACAG
TACACCTACCCTGTCTTTATATGATATCTTGGGTGTTTCTCCCGCTGCGT
CGCCCTCTACCATCAAACGCGCCTATCAATCAGCTGCTAGAGCCACGCAT
CCTGATAAGGCTGCGGCTCATTCGAAAGGTGGTTGTCGGGCCAGACCGGG
TCATGTCTCCTCTCCCAGGTTCACTTTCTTGGAGATACAGGCGGCATGGG
ATGTATTGAGGGCCCGGGAAAGCCGCGCCGCGTACGATGCAGCCTGGGGG
CGAAAGAGGGATGAGGAGGTTGAGGGCTTCATCGCGGAGGAGGTGAGGGT
TGCGGAGATGGAGGAGGAGGGCGGGGAGGAGGACGGGAAGGAAAGGTGGC
TGCTGTACCCTTGCCGGTGCGGCGATGCCTTTCGTGTCCCGAAAGAGGAG
GGACGCTTTCTCGTGGGGGGGACAGGGAGCCGAGAGACAGAGGAGGGTGG
GACGGAGAAGGTTAAAATGGATAGAAGTGGAGGAGGGGGCGGCGGCCAAG
ATGGAGGAGCTGCTGTGGTGGTGACTTGCGATGGGTGTTCGTTGCGCATC
CGTGTTAGGGGATGATGATGGAAAAGGACGCGAAGGACGCTGTTGTTAGG
GGATGATGATGGAAAAGGACGCGAAGGAGGCTGTTGTCCGGGGATGATGA
GGGAAAAGAGCCCGGGGCCACGCCGATGGAGTGGCGAAATCGCCGCCCAC
TGCGACAATCGCCAAGCTCGTATTGCACACAGATACTCATCAAGTAAAGT
AAAATCTCACGACTCTTCTACCCGATGTGAAAGCGGCGTTGTCGTCAAGA
TTCGAACACACGAG
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protein sequence of rna660

>rna660-protein ID=rna660-protein|Name=rna660|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MPDWSGARDPKQPQPVCSTLTNAALSSPSSLFWTGTLARSQTRLFRQAVQ
EEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSE
LHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLR
LSSPSSPAVEPGWVREVLKTGK
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mRNA from alignment at CM002456.1:101957..102779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna660 ID=rna660|Name=rna660|organism=Nannochloropsis gaditana|type=mRNA|length=823bp|location=Sequence derived from alignment at CM002456.1:101957..102779- (Nannochloropsis gaditana)
ATGCCCGACTGGAGTGGTGCTCGTGACCCCAAACAACCACAACCCGTGTG
TTCCACCCTCACCAACGCCGCCTTAAGCAGCCCGTCGTCCCTTTTCTGGA
CGGGCACGCTCGCCCGTTCCCAAACTCGTCTTTTTCGGCAAGCTGTGCAA
GAAGAGATGCGGCGCCTTCAACACCACGATGGCCTTCCTCGCGCGGCTGC
CGTGGAAAAGCTACTGGCGCGACTCAACTCCCCGGACGCCCCATTAAATG
CAGTGTCGACATCCCCGTACCATAAAACAAAGCCTGTGCTCACGTCGGAG
CTCCATGCGGTCATGGAATGCTATGGTCTCACACCTGAGGAAGCCCGTCG
GGCCTTACTCGTGAAGAGCGCTCTGGGACAATTAAGGCGACAAGGCTGGG
ACGCATCGACGGCTTTGATGGAGCTGACTGCACGCATGGTGCCTTTGCGT
CTGTCCTCGCCATCTTCTCCGGCTGTTGAGCCGGGGTGGGTGCGGGAGGT
GGTAGGTGAGGCGACCAGCGGTAGACGAGGGGGAGAGGGAGGAGGAGGAA
AGCAAATCGTGGAGGAGATGAATGGGGGTGGAGCTCCAGAAAGGAAGGGA
ATGATGCACATGGGAAGGACGGCAACGACGCAGACAGAGAGTAGGTATCC
CTCCCAGGCCGGAGTGGTGAGGAAGGAGGGAGGGGGGGAGGGAGGGAGGG
AGGGAGGGGGGGAGAGAGGGAGGGAGGGAGGGTCCATGGGGGCACCGAGG
CAGCGTGGGAGAGGAAAACGTCTTTCTTCGTCGTCCTTATCGTCCCCTTC
GGAAGTTGAAAACGGGGAAATGA
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Coding sequence (CDS) from alignment at CM002456.1:101957..102779-

>rna660 ID=rna660|Name=rna660|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002456.1:101957..102779- (Nannochloropsis gaditana)
TTGAAAACGGGGAAATGAATGCCCGACTGGAGTGGTGCTCGTGACCCCAA
ACAACCACAACCCGTGTGTTCCACCCTCACCAACGCCGCCTTAAGCAGCC
CGTCGTCCCTTTTCTGGACGGGCACGCTCGCCCGTTCCCAAACTCGTCTT
TTTCGGCAAGCTGTGCAAGAAGAGATGCGGCGCCTTCAACACCACGATGG
CCTTCCTCGCGCGGCTGCCGTGGAAAAGCTACTGGCGCGACTCAACTCCC
CGGACGCCCCATTAAATGCAGTGTCGACATCCCCGTACCATAAAACAAAG
CCTGTGCTCACGTCGGAGCTCCATGCGGTCATGGAATGCTATGGTCTCAC
ACCTGAGGAAGCCCGTCGGGCCTTACTCGTGAAGAGCGCTCTGGGACAAT
TAAGGCGACAAGGCTGGGACGCATCGACGGCTTTGATGGAGCTGACTGCA
CGCATGGTGCCTTTGCGTCTGTCCTCGCCATCTTCTCCGGCTGTTGAGCC
GGGGTGGGTGCGGGAGGTGTTGAAAACGGGGAAATGAATGCCCGACTGGA
GTGGTGCTCGTGACCCCAAACAACCACAACCCGTGTGTTCCACCCTCACC
AACGCCGCCTTAAGCAGCCCGTCGTCCCTTTTCTGGACGGGCACGCTCGC
CCGTTCCCAAACTCGTCTTTTTCGGCAAGCTGTGCAAGAAGAGATGCGGC
GCCTTCAACACCACGATGGCCTTCCTCGCGCGGCTGCCGTGGAAAAGCTA
CTGGCGCGACTCAACTCCCCGGACGCCCCATTAAATGCAGTGTCGACATC
CCCGTACCATAAAACAAAGCCTGTGCTCACGTCGGAGCTCCATGCGGTCA
TGGAATGCTATGGTCTCACACCTGAGGAAGCCCGTCGGGCCTTACTCGTG
AAGAGCGCTCTGGGACAATTAAGGCGACAAGGCTGGGACGCATCGACGGC
TTTGATGGAGCTGACTGCACGCATGGTGCCTTTGCGTCTGTCCTCGCCAT
CTTCTCCGGCTGTTGAGCCGGGGTGGGTGCGGGAGGTG
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Synonyms
Publications