EWM30013.1, cds660 (CDS) Nannochloropsis gaditana

Overview
NameEWM30013.1
Unique Namecds660
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:102279..102779 -
Alignment locationCM002456.1:101957..101974 -

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Properties
Property NameValue
Protein idEWM30013.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100802g3.3722.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:102279..102779 -
CM002456.1supercontigCM002456.1:101957..101974 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM30013.1 vs. NCBI_GenBank
Match: gi|585112635|gb|EWM30013.1| (hypothetical protein Naga_100802g3 [Nannochloropsis gaditana])

HSP 1 Score: 347.821 bits (891), Expect = 3.999e-121
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 
Query:    1 MPDWSGARDPKQPQPVCSTLTNAALSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREVLKTGK 172
            MPDWSGARDPKQPQPVCSTLTNAALSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREVLKTGK
Sbjct:    1 MPDWSGARDPKQPQPVCSTLTNAALSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREVLKTGK 172
[Close]
BLAST of EWM30013.1 vs. NCBI_GenBank
Match: gi|553181106|ref|XP_005853515.1| (hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526] >gi|422295548|gb|EKU22847.1| hypothetical protein NGA_0483400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 332.413 bits (851), Expect = 2.035e-114
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0 
Query:    1 MPDWSGARDPKQPQPVCSTLTNAALSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLNSPDAPLNAVSTSPYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREVL 168
            MPDWSGARDPKQPQPVCSTLTNA LSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARL SPDAP NAVSTS YHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREV+
Sbjct:    3 MPDWSGARDPKQPQPVCSTLTNATLSSPSSLFWTGTLARSQTRLFRQAVQEEMRRLQHHDGLPRAAAVEKLLARLTSPDAPSNAVSTSSYHKTKPVLTSELHAVMECYGLTPEEARRALLVKSALGQLRRQGWDASTALMELTARMVPLRLSSPSSPAVEPGWVREVV 170
The following BLAST results are available for this feature:
BLAST of EWM30013.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112635|gb|EWM30013.1|3.999e-121100.00hypothetical protein Naga_100802g3 [Nannochloropsi... [more]
gi|553181106|ref|XP_005853515.1|2.035e-11497.02hypothetical protein NGA_0483400, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna660rna660Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications