rna66, rna66 (mRNA) Nannochloropsis gaditana

Overview
Namerna66
Unique Namerna66
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length895
Alignment locationCM002455.1:187745..189270 -

Link to JBrowse

Properties
Property NameValue
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100129g11.1883.mrna
Orig protein idgnl|cribi|Naga_100129g11.1883
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:187745..189270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100129g11gene65Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna66rna66-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30605.1cds66Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna66 ID=rna66|Name=rna66|organism=Nannochloropsis gaditana|type=mRNA|length=895bp
AAAATTCATGTCAGGCACAACTGCGTTTCCAGAGAGATACACATGGTGGG
ATAAACGTGTGAAACGACCGAGGATGCAAGGCGTTGCTGCCTTGCCTGCA
TGGAGAAGACCCCGGATGCCCTTGTCGTTGGGAGTATTTTGGCTTTTGGG
CGTCACAGTAGCATCATCAGACGGGAAATGTAGGAGCTGTGCTGGATTCG
CCCCTGTACAGATGGGAGGGCATACAAGAAGACTATCACACACCCCGTCT
CCGCTCTCTTTAAGCAAGACATCGACTCCTTTAGGGGTGATAACAGCAAC
AAAAGTAAAGGCAAAATGCTCTAATGTGAGGACTTACATAGATGTTTCGA
CAAGGGGTGAATTTGTCACGCACACCACTGCCTCCTTATTGGTGGGAGCA
CTGAGTCTCGTAACGATTACACCGCCACGCATGGTACAAGCTGCCGAATC
AAGTACTGATAACCCTTCAACCGAGACGAATCCCGTAGCACCTAGACGAT
GGATAAGTGGCAAAAGCGAAAAGCCAAGAGGAAGCAAAGATCGTACAGGC
ACGAAGAGAGATAGCAATTATTTGCGGTGTTTGAGTGACTGCACTACCGA
ATGTCGGAAGCCAGGACAAGGCCCCAGTAAGGACAATGCGGAATGCTTGG
AGGCATGTCAAGATTATTGCTGTAAGACTTACGAGCAATGCACTTACACA
CAAAACTATGAAGGATAATCACAGATACAAGACAATATTCCTGCGCAATC
GTAACCTTGCAGACCAAGCAACCATAAGGCGAGATAAAACTGAACAATTG
TACCATTGAATGGAAGAAATTGATAACACGGTGCACTGAATAGGCTTCCT
TCTTGGTTGCCGCGACCCAAGGAAAGAAGAGGCCATTTGTACATC
back to top

protein sequence of rna66

>rna66-protein ID=rna66-protein|Name=rna66|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MADNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQP
THPSLQQQHPAVPEEEHAPQSAPFVAPGELAPAPLILPLPPLPPSTNISP
DPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVV
RTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGP
DGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHA
QKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPGLAASSRGGGGG
EEGRGEGEKEGEEEEGQLNRE
back to top

mRNA from alignment at CM002455.1:187745..189270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna66 ID=rna66|Name=rna66|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp|location=Sequence derived from alignment at CM002455.1:187745..189270- (Nannochloropsis gaditana)
ACACCTCACACTCAACGCGCTGTACCCTCTAACCACGCCCTCGTTCCCTT
CGATCCCTCAGTGGACAAGCTTCCCCATACTTCAGGCAGTATATTGCTGG
TTCGGCGGGCTTGGTTAAGCCACATTTATAACGTGCATTTTTGCGGTCAA
GGTTGGGAGAGAAAAAGAGAAGGCTCGTTTTCGACAGACCGGGCACCTGC
TTCTTGTCACCCTTCACCTTGCAAGAGCCATTCGTGCAAGTTCTCGTGAA
CACTTCGTAGACAATCTTGTTTTTACACCGCGCGACTGTTTACCATGGCG
GATAACGGCGTTGTCACCGTCCACGGAGAGCCCATGAATATGATAGCCCT
TCCTCAGCTTCCTCTCCGGGCGGAGCATCCCGTCCCGGCTCTGCCTGGCC
CCAAGGAGGAAGAAAAAAGATTGCAGCAACCATTACTGCAACCGACGCAT
CCATCACTGCAACAACAACATCCAGCAGTACCCGAGGAGGAACACGCTCC
ACAAAGCGCACCCTTTGTCGCGCCGGGGGAACTCGCCCCGGCTCCCCTTA
TCCTGCCTCTTCCTCCGCTACCCCCCTCGACGAACATCTCGCCTGACCCC
ATCCCACCGGCCCGTAAGAGCAGCATTTTGAGCGGCGGAATGGGGAATCA
AGGGCGTTGGACCGAGGCGGAGCACGACTTGTTTCTGGAGGGCCTGCGTG
AGCACGGGAAAGGGGCCTGGAAACTCATCAGCGAAAAGGTGGTACGAACC
CGAAGCGCGGAGCAAGTGCGGATCCACGCCCAGAAATACTTTTTGCGGCA
AAGCAAACAAGAAAAGAAGAAGAACGCCGCCAACAAGGGGGCGATGGCGG
AGATTGAAGGAGGAGGGAAGGAGAGCAACGGAGGAGGAGGTCCCGATGGG
CCGGGCGCAGGTAGGTTCGACAAGGCCGGCAACGGCGCCGTGGACCGTGT
GGCGTGCGCAGATGCTTTAGCTTTGTGTTACGCACATGGATTGGTTGTAG
GGTAGCCCGCCTGCTTTCTTTCCTGCCCGACTTGATTCCATGTTATTCAT
CCCTCCTCTCGTCGCGCCCCTCCTTTTCGCCCCCTCCTATCTCCTGGCCC
CTAATTCTCCCCCCTTTTTCCATTTTCCCCCCGCTTTTTTCTCACTTCCC
TTGACCTGCAGGCAGCAAAGAAGGACACTGGACCGACGAGGAACACGAGC
TTTTCTTGCGGTGCTGGGAGCAGTACGGGAAGTCTTGGAAGAAACTAAGT
GAGATCATCGGGACGCGGACCAACGAGCAGATTAGAACCCATGCTCAGAA
GTACTTTGCGAAATTGCGCGAATTGAGGGAACGGGGTTATGAAGGGGCTT
ATTACATGGATGGGACGAGGCATTTGACCAAAACGTTCCTAGGAGGGACG
CAGCCGCCCGGACTTGCAGCGAGCTCGAGGGGGGGAGGCGGGGGGGAGGA
GGGAAGGGGGGAAGGAGAGAAGGAGGGAGAGGAGGAGGAGGGGCAATTAA
ACCGAGAGTGAGGGTGTGGGGTGGGA
back to top

Coding sequence (CDS) from alignment at CM002455.1:187745..189270-

>rna66 ID=rna66|Name=rna66|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002455.1:187745..189270- (Nannochloropsis gaditana)
GCAGCAAAGAAGGACACTGGACCGACGAGGAACACGAGCTTTTCTTGCGG
TGCTGGGAGCAGTACGGGAAGTCTTGGAAGAAACTAAGTGAGATCATCGG
GACGCGGACCAACGAGCAGATTAGAACCCATGCTCAGAAGTACTTTGCGA
AATTGCGCGAATTGAGGGAACGGGGTTATGAAGGGGCTTATTACATGGAT
GGGACGAGGCATTTGACCAAAACGTTCCTAGGAGGGACGCAGCCGCCCGG
ACTTGCAGCGAGCTCGAGGGGGGGAGGCGGGGGGGAGGAGGGAAGGGGGG
AAGGAGAGAAGGAGGGAGAGGAGGAGGAGGGGCAATTAAACCGAGAGTGA
ATGGCGGATAACGGCGTTGTCACCGTCCACGGAGAGCCCATGAATATGAT
AGCCCTTCCTCAGCTTCCTCTCCGGGCGGAGCATCCCGTCCCGGCTCTGC
CTGGCCCCAAGGAGGAAGAAAAAAGATTGCAGCAACCATTACTGCAACCG
ACGCATCCATCACTGCAACAACAACATCCAGCAGTACCCGAGGAGGAACA
CGCTCCACAAAGCGCACCCTTTGTCGCGCCGGGGGAACTCGCCCCGGCTC
CCCTTATCCTGCCTCTTCCTCCGCTACCCCCCTCGACGAACATCTCGCCT
GACCCCATCCCACCGGCCCGTAAGAGCAGCATTTTGAGCGGCGGAATGGG
GAATCAAGGGCGTTGGACCGAGGCGGAGCACGACTTGTTTCTGGAGGGCC
TGCGTGAGCACGGGAAAGGGGCCTGGAAACTCATCAGCGAAAAGGTGGTA
CGAACCCGAAGCGCGGAGCAAGTGCGGATCCACGCCCAGAAATACTTTTT
GCGGCAAAGCAAACAAGAAAAGAAGAAGAACGCCGCCAACAAGGGGGCGA
TGGCGGAGATTGAAGGAGGAGGGAAGGAGAGCAACGGAGGAGGAGGTCCC
GATGGGCCGGGCGCAGGCAGCAAAGAAGGACACTGGACCGACGAGGAACA
CGAGCTTTTCTTGCGGTGCTGGGAGCAGTACGGGAAGTCTTGGAAGAAAC
TAAGTGAGATCATCGGGACGCGGACCAACGAGCAGATTAGAACCCATGCT
CAGAAGTACTTTGCGAAATTGCGCGAATTGAGGGAACGGGGTTATGAAGG
GGCTTATTACATGGATGGGACGAGGCATTTGACCAAAACGTTCCTAGGAG
GGACGCAGCCGCCCGGACTTGCAGCGAGCTCGAGGGGGGGAGGCGGGGGG
GAGGAGGGAAGGGGGGAAGGAGAGAAGGAGGGAGAGGAGGAGGAGGGGCA
ATTAAACCGAGAGTGAATGGCGGATAACGGCGTTGTCACCGTCCACGGAG
AGCCCATGAATATGATAGCCCTTCCTCAGCTTCCTCTCCGGGCGGAGCAT
CCCGTCCCGGCTCTGCCTGGCCCCAAGGAGGAAGAAAAAAGATTGCAGCA
ACCATTACTGCAACCGACGCATCCATCACTGCAACAACAACATCCAGCAG
TACCCGAGGAGGAACACGCTCCACAAAGCGCACCCTTTGTCGCGCCGGGG
GAACTCGCCCCGGCTCCCCTTATCCTGCCTCTTCCTCCGCTACCCCCCTC
GACGAACATCTCGCCTGACCCCATCCCACCGGCCCGTAAGAGCAGCATTT
TGAGCGGCGGAATGGGGAATCAAGGGCGTTGGACCGAGGCGGAGCACGAC
TTGTTTCTGGAGGGCCTGCGTGAGCACGGGAAAGGGGCCTGGAAACTCAT
CAGCGAAAAGGTGGTACGAACCCGAAGCGCGGAGCAAGTGCGGATCCACG
CCCAGAAATACTTTTTGCGGCAAAGCAAACAAGAAAAGAAGAAGAACGCC
GCCAACAAGGGGGCGATGGCGGAGATTGAAGGAGGAGGGAAGGAGAGCAA
CGGAGGAGGAGGTCCCGATGGGCCGGGCGCAG
back to top
Synonyms
Publications