EWM30605.1, cds66 (CDS) Nannochloropsis gaditana

Overview
NameEWM30605.1
Unique Namecds66
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:188361..188976 -
Alignment locationCM002455.1:187760..188109 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30605.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100129g11.1883.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:188361..188976 -
CM002455.1supercontigCM002455.1:187760..188109 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|585113277|gb|EWM30605.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MADNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGELAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGPDGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPGLAASSRGGGGGEEGRGEGEKEGEEEEGQLNRE 321
            MADNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGELAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGPDGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPGLAASSRGGGGGEEGRGEGEKEGEEEEGQLNRE
Sbjct:    1 MADNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGELAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGPDGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPGLAASSRGGGGGEEGRGEGEKEGEEEEGQLNRE 321          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|585106598|gb|EWM24966.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 169.474 bits (428), Expect = 1.678e-44
Identity = 101/262 (38.55%), Postives = 143/262 (54.58%), Query Frame = 0
Query:   30 VPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGELAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKK-KNAANKGAMAEIEGGGKESNGGGGPDGPGAG-SKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPG 289
            +P L  P + ++RL    L      L   H  +    H   S    A  +L      L    + P+ + +         ++I++  + +   WT  EH  FLEGL+++G+ +W+ IS  ++ TR+ E+++ +A  Y + Q K     + A+ KG                  DG  A  +KEGHWTDEEHE FL+CW +YGKSWKK+S+++ TR+NEQIRTHAQKYF KL +LR  GYEG+Y MDGTRHLTKTFL   Q  G
Sbjct:    1 MPGLSLPLKLKRRLNIHSLY-----LNMHHIIL----HGSYSYTGRAVAKLLTLHFRLASCAMDPAISAASSANVSWNDTAIITRPIASSD-WTTEEHARFLEGLKQYGR-SWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKG-----------------KDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEG 234          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|970027994|ref|XP_015075285.1| (PREDICTED: transcription factor DIVARICATA-like [Solanum pennellii])

HSP 1 Score: 94.3597 bits (233), Expect = 3.421e-19
Identity = 58/161 (36.02%), Postives = 80/161 (49.69%), Query Frame = 0
Query:  121 RWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGPDGPG-------------------AGSKEGHWTDEEHELFLRCWEQYGKSWKKLS-EIIGTRTNEQIRTHAQKYFAKLRELR 261
            RW+E EH  FL GL E G G W  I+++ V +R+  Q+  HAQKYF  Q  +  K   +     +     GKE +    P  P                    +  +EG WT+EEHE FL   E+ G++W ++S E + +RT  QI +HAQKYF  LR  R
Sbjct:   33 RWSEEEHRAFLCGLEELGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKAKNDKAAKSTSNVDSSSPTSGKEDSNEERPLSPMPISYSVPNVSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVQSRTPTQITSHAQKYFESLRNNR 193          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|460387632|ref|XP_004239479.1| (PREDICTED: transcription factor DIVARICATA-like [Solanum lycopersicum])

HSP 1 Score: 92.0485 bits (227), Expect = 1.426e-18
Identity = 58/154 (37.66%), Postives = 78/154 (50.65%), Query Frame = 0
Query:  121 RWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKES----------NGGGGPDGPGAGSK--EGHWTDEEHELFLRCWEQYGKSWKKLS-EIIGTRTNEQIRTHAQKYFAKLRELR 261
            RW+E EH  FL GL + G G W  I+++ V +R+  Q+  HAQKYF  Q  +  K   +           GKE           N     D     S+  EG WT+EEHE FL   E+ G++W ++S E + +RT  QI +HAQKYF  LR  R
Sbjct:   26 RWSEEEHRAFLCGLEKLGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKTRNDKAAKSTSNVELSSSTSGKEERPLSPMPISYNDSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVLSRTPTQITSHAQKYFEGLRNDR 179          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 84.3445 bits (207), Expect = 1.921e-14
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  188 EGGGKESNGGGGPDGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDG 273
            +    E   G G      G   G WT EEH LFL+  EQ+GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G EG   M+G
Sbjct:   78 QSATTEGASGQGAASLAPGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 163          

HSP 2 Score: 65.4698 bits (158), Expect = 3.559e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  118 NQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSK 171
            N GRWT  EH LFL+GL +HGKG WK I+  ++++R+  Q+R HAQKYF + +K
Sbjct:   98 NTGRWTAEEHRLFLQGLEQHGKG-WKKIA-SLIKSRTVVQIRTHAQKYFQKLAK 149          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 83.9593 bits (206), Expect = 2.129e-14
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  206 GSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDG 273
            G   G WT EEH LFL+  EQ+GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G EG   M+G
Sbjct:   95 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 162          

HSP 2 Score: 65.4698 bits (158), Expect = 3.191e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  118 NQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSK 171
            N GRWT  EH LFL+GL +HGKG WK I+  ++++R+  Q+R HAQKYF + +K
Sbjct:   97 NTGRWTAEEHRLFLQGLEQHGKG-WKKIA-SLIKSRTVVQIRTHAQKYFQKLAK 148          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-14
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  206 GSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDG 273
            G   G WT EEH LFL+  EQ+GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G EG   M+G
Sbjct:  114 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          

HSP 2 Score: 65.4698 bits (158), Expect = 3.581e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  118 NQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSK 171
            N GRWT  EH LFL+GL +HGKG WK I+  ++++R+  Q+R HAQKYF + +K
Sbjct:  116 NTGRWTAEEHRLFLQGLEQHGKG-WKKIA-SLIKSRTVVQIRTHAQKYFQKLAK 167          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|685267017|ref|XP_009122742.1| (PREDICTED: transcription factor DIVARICATA-like [Brassica rapa])

HSP 1 Score: 75.0998 bits (183), Expect = 3.037e-13
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0
Query:  122 WTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGP 200
            WTE EH LFLEGL ++G+G WK IS K V+TR+  QV  HAQKYFLR   QE +K A  + ++ +I      +N    P
Sbjct:   12 WTEEEHRLFLEGLAKYGRGDWKNISRKSVKTRTPTQVASHAQKYFLR---QEAQKKAKKRSSIHDINSIDHAANNVSAP 87          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|1072976107|ref|XP_018438383.1| (PREDICTED: transcription factor DIVARICATA-like [Raphanus sativus])

HSP 1 Score: 77.0258 bits (188), Expect = 3.683e-13
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  122 WTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQEKKKNAANKGAMAEIEGGGKESNGGGGP 200
            WTE EH LFLEGL + GKG W+ IS K+VRT+++ QV  HAQKYFLRQ     KKNA  + ++ +I      +N    P
Sbjct:   88 WTEEEHRLFLEGLEKCGKGNWRDISRKIVRTKNSAQVASHAQKYFLRQV---AKKNAKKRSSIHDITLIDHAANNVTAP 163          
BLAST of EWM30605.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.8777 bits (198), Expect = 3.857e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  206 GSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDG 273
            G   G WT EEH LFL+  EQ+GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G EG   M+G
Sbjct:  114 GENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          

HSP 2 Score: 63.929 bits (154), Expect = 1.320e-7
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query:  118 NQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYF-----LRQSKQEKKKNAANKGAMAEI 187
            N GRWT  EH LFL+GL +HGKG WK I+  ++++R+  Q+R HAQKYF      RQ+ +E       +G +A I
Sbjct:  116 NTGRWTAEEHRLFLQGLEQHGKG-WKKIAS-LIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRGGVASI 188          
The following BLAST results are available for this feature:
BLAST of EWM30605.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113277|gb|EWM30605.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585106598|gb|EWM24966.1|1.678e-4438.55SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|970027994|ref|XP_015075285.1|3.421e-1936.02PREDICTED: transcription factor DIVARICATA-like [S... [more]
gi|460387632|ref|XP_004239479.1|1.426e-1837.66PREDICTED: transcription factor DIVARICATA-like [S... [more]
gi|1210512502|dbj|GAX28359.1|1.921e-1447.67protein MYSM1 [Fistulifera solaris][more]
gi|1210516787|dbj|GAX24276.1|2.129e-1455.88protein MYSM1 [Fistulifera solaris][more]
gi|219128113|ref|XP_002184266.1|3.475e-1455.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|685267017|ref|XP_009122742.1|3.037e-1348.10PREDICTED: transcription factor DIVARICATA-like [B... [more]
gi|1072976107|ref|XP_018438383.1|3.683e-1349.37PREDICTED: transcription factor DIVARICATA-like [R... [more]
gi|219128116|ref|XP_002184267.1|3.857e-1355.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna66rna66Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications