rna6598, rna6598 (mRNA) Nannochloropsis gaditana

Overview
Namerna6598
Unique Namerna6598
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length372
Alignment locationCM002469.1:36186..36892 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101278g1.3649.mrna
Orig protein idgnl|cribi|Naga_101278g1.3649
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:36186..36892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101278g1gene6378Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6598rna6598-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24091.1cds6582Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6598 ID=rna6598|Name=rna6598|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGACGCCTATCCAAGCAGCCTTTGCGGTGGCGCGACAAGGACACCGCCC
TCCCCTCCCTCCCCGCACCCCCCCCAGGCTAGCTCAATTGATTCAATTGT
GTTGGCACGATGACCCTATCCGCCGCCCAACGTTTAGTCAGGTGGTGGCG
GGTTTGAAGGAGGTGCGGAGGGAAGTGTACGCCGGGAGGCAAGGAGGAGG
GGCAGGATCTGGGGCAGGGGCCGGGGGAGGGGGAGGAGAGAAAGCATCCT
TGCCCCCCCCTCGCCCGGCACCTGTCTCACGGGGGAGAGGGGAGGAGGGA
GAAGGAGAGAGACAAGACGCACAACGGAGACGAGCAGCACACACACGCCA
GAGGGGTGACCCAGCACGTTGA
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protein sequence of rna6598

>rna6598-protein ID=rna6598-protein|Name=rna6598|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MLPVQVVARCLSVWVIHSWVEWARSRLRTKTLPAAQKSNSEPSTIRCIAT
LRRSKVSCHSTEGSVALFSFDRHVAKGLAGKHSALATSSSRTKEKRARGI
QYSSETRQVVGGDLAEVKGGRSHQSYNTILLYDLRTDAYLERG
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mRNA from alignment at CM002469.1:36186..36892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6598 ID=rna6598|Name=rna6598|organism=Nannochloropsis gaditana|type=mRNA|length=707bp|location=Sequence derived from alignment at CM002469.1:36186..36892- (Nannochloropsis gaditana)
ATGTTGCCCGTCCAGTCAGTTAGAACGGCATACGACACCGCTTAAGCCTC
CTGGCGCTAGCTCGGAGCACAAGCCCCCCCCTCCCATTGCCTGTGCCCAC
GGCGGCAATATTCACAGCCTCACACCGATGCACACGCTCACACGCGTACA
TACAACATATATACAGGGTAGTTGCGCGGTGCCTGTCGGTGTGGGTCATC
CACTCGTGGGTGGAATGGTGCTGGTTATGAAGGCCTCAGCATCGCCAGCG
CATCGATGAAGGGCCCGGTCCCGCCTACGCACCAAGACGGTACGTGATTT
CAGAGACCGCCACAGGGTACACACGTGCCAGGCACTCATCTACACACCAT
TGTACCCAATCGTGGTAGCTGCCAGCCGCGCAAAAGTCAAACAGTGAACC
CTCGACCATCCGGTGCATAGCCACCCTGAGAAGATCTAAAGTGTCGTGCC
ATTCAACCGAAGGGTCCGTGGCTCTTTTCTCATTCGACCGTCACGTTGCC
AAAGGGCTAGCCGGAAAACACTCCGCTCTTGCCACATCATCATCCCGCAC
GAAAGAAAAACGGGCGCGAGGCATTCAATACAGTTCTGAGACACGGCAAG
TGGTAGGAGGCGACCTGGCCGAGGTGAAAGGGGGGCGTAGTCACCAATCA
TACAACACCATCCTCCTGTACGACTTAAGGACGGATGCCTACCTTGAACG
AGGATAA
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Coding sequence (CDS) from alignment at CM002469.1:36186..36892-

>rna6598 ID=rna6598|Name=rna6598|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002469.1:36186..36892- (Nannochloropsis gaditana)
CTGCCAGCCGCGCAAAAGTCAAACAGTGAACCCTCGACCATCCGGTGCAT
AGCCACCCTGAGAAGATCTAAAGTGTCGTGCCATTCAACCGAAGGGTCCG
TGGCTCTTTTCTCATTCGACCGTCACGTTGCCAAAGGGCTAGCCGGAAAA
CACTCCGCTCTTGCCACATCATCATCCCGCACGAAAGAAAAACGGGCGCG
AGGCATTCAATACAGTTCTGAGACACGGCAAGTGGTAGGAGGCGACCTGG
CCGAGGTGAAAGGGGGGCGTAGTCACCAATCATACAACACCATCCTCCTG
TACGACTTAAGGACGGATGCCTACCTTGAACGAGGATAAGGCCCGGTCCC
GCCTACGCACCAAGACGGGTAGTTGCGCGGTGCCTGTCGGTGTGGGTCAT
CCACTCGTGGGTGGAATGATGTTGCCCGTCCACTGCCAGCCGCGCAAAAG
TCAAACAGTGAACCCTCGACCATCCGGTGCATAGCCACCCTGAGAAGATC
TAAAGTGTCGTGCCATTCAACCGAAGGGTCCGTGGCTCTTTTCTCATTCG
ACCGTCACGTTGCCAAAGGGCTAGCCGGAAAACACTCCGCTCTTGCCACA
TCATCATCCCGCACGAAAGAAAAACGGGCGCGAGGCATTCAATACAGTTC
TGAGACACGGCAAGTGGTAGGAGGCGACCTGGCCGAGGTGAAAGGGGGGC
GTAGTCACCAATCATACAACACCATCCTCCTGTACGACTTAAGGACGGAT
GCCTACCTTGAACGAGGATAAGGCCCGGTCCCGCCTACGCACCAAGACGG
GTAGTTGCGCGGTGCCTGTCGGTGTGGGTCATCCACTCGTGGGTGGAATG
ATGTTGCCCGTCCACTGCCAGCCGCGCAAAAGTCAAACAGTGAACCCTCG
ACCATCCGGTGCATAGCCACCCTGAGAAGATCTAAAGTGTCGTGCCATTC
AACCGAAGGGTCCGTGGCTCTTTTCTCATTCGACCGTCACGTTGCCAAAG
GGCTAGCCGGAAAACACTCCGCTCTTGCCACATCATCATCCCGCACGAAA
GAAAAACGGGCGCGAGGCATTCAATACAGTTCTGAGACACGGCAAGTGGT
AGGAGGCGACCTGGCCGAGGTGAAAGGGGGGCGTAGTCACCAATCATACA
ACACCATCCTCCTGTACGACTTAAGGACGGATGCCTACCTTGAACGAGGA
TAAGGCCCGGTCCCGCCTACGCACCAAGACGGGTAGTTGCGCGGTGCCTG
TCGGTGTGGGTCATCCACTCGTGGGTGGAATGATGTTGCCCGTCCACTGC
CAGCCGCGCAAAAGTCAAACAGTGAACCCTCGACCATCCGGTGCATAGCC
ACCCTGAGAAGATCTAAAGTGTCGTGCCATTCAACCGAAGGGTCCGTGGC
TCTTTTCTCATTCGACCGTCACGTTGCCAAAGGGCTAGCCGGAAAACACT
CCGCTCTTGCCACATCATCATCCCGCACGAAAGAAAAACGGGCGCGAGGC
ATTCAATACAGTTCTGAGACACGGCAAGTGGTAGGAGGCGACCTGGCCGA
GGTGAAAGGGGGGCGTAGTCACCAATCATACAACACCATCCTCCTGTACG
ACTTAAGGACGGATGCCTACCTTGAACGAGGATAAGGCCCGGTCCCGCCT
ACGCACCAAGACGGGTAGTTGCGCGGTGCCTGTCGGTGTGGGTCATCCAC
TCGTGGGTGGAATGATGTTGCCCGTCCA
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Synonyms
Publications