rna6596, rna6596 (mRNA) Nannochloropsis gaditana

Overview
Namerna6596
Unique Namerna6596
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1188
Alignment locationCM002469.1:32875..33655 +

Link to JBrowse

Properties
Property NameValue
ProductHistone-like transcription factor
Orig transcript idgnl|cribi|Naga_101271g1.4533.mrna
Orig protein idgnl|cribi|Naga_101271g1.4533
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:32875..33655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101271g1gene6376Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6596rna6596-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24094.1cds6580Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6596 ID=rna6596|Name=rna6596|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp
CATAATGATTTCATCTGTCGTCTATTTGGTGTAGATTACGGAAGCTTTGA
TTCACACCTATTGCGTCTAATCATAAGTCAAAAATCGCAAAAGCTCGCTC
ACGGCAGTCACCTATCTTTTCGCCTTAGGAAATGGAATCAACTAAATGCA
TCGCGGCGTCTGAGCCTATGCCTGCGGTGCCCTCTTCTCCGTACCGACGA
AGAAGCAGTGGGAGCAGTCCACGGAGGAGGAGAACGCAGGCTCCTTTGAC
GGGCAGCAAGTGGATATTCCACCACCTCAATCAGTGGCAAGCCCCCCTCA
CCCTCCTGACATGGATCATCAACCTGGTCATTTTCATGCCAAGTTCTGGC
AATTTCAAACTTATGCGCTGGGTGGACGCGTCCTTCGTGCTTTGGCTACA
ATTTCCCAAGAAAAGGACGCATCAATTTGTCACCCACGGTCTGCAGAATA
TATGGGCCCCTATCCTCCTCATGGAGACGCTCTATGTGTATGCCTATGCG
CACAGATACTTGGCCTACTCCCATCTCCTCCTCCTACCGCTGGGGGCGTC
CTACTGGATCGTCCACAACCGGTTGGCGCGGGCGGAGCAGCGGCTTCGGG
TCTCCAAGGGGAAGACGATTTCCTGGGAGGAGTATGGATGCATCTACCTC
CCTTTCGCGCTCAAATCCGGATTTTTTTCCGTGAGCGCCTTCATGAATCT
GCCGTTCCTCCTCCGCAAACTCGTCCCAGACCTGCCCGCGTGGGCCCGGG
CGGGGGCGGGCGCCGTGGCCCATATAGGCATGGTGGGGTTGGGCCTCAGT
GCGGTGCTCGAGCACAACTGTGCCGCAACCTTCCTCTTTGTCCTGTGGGG
GCTCCACGGGGGTGCCAGCCGCCTTCCCGGCACCGTGTCCCTCCCCGTCT
TCTTCCTGACCTTTTTGCGTGCGTACTCGTCGTTGGGTGCCTATGTCCGC
GGATGGGCCCTGGCGCATTCCTTGGAGGGAGGTTTCTGTACCGGCTACGA
ATGGCTCGATAAGGTCTTGGCCTGTGCGGACGAAGTCTCGCACGTGCTGA
CGGAACGCTTGGATTGGCTCGAGGCCTTCCTCGCGGACTCCTTCCAGCTT
GCCGTCACCCGTGTCCATTACTTCCAGATCGCCCTTTATACTTCCATCAG
GGATTGGCGCCCTCTTCCTTCCTCCTCCTCCTCCTCCT
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protein sequence of rna6596

>rna6596-protein ID=rna6596-protein|Name=rna6596|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MCDSTTAPLRDEIGLPFAPVERAIEAVAAQHNFRVTKPAGDLINALLSEF
ILQLCHQGSVSASKKRVVNEVHVRTALETLYAARL
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mRNA from alignment at CM002469.1:32875..33655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6596 ID=rna6596|Name=rna6596|organism=Nannochloropsis gaditana|type=mRNA|length=781bp|location=Sequence derived from alignment at CM002469.1:32875..33655+ (Nannochloropsis gaditana)
TTCAAGCCTCACAGGGGCCATAATAAACTTTGCCTCATGTCTCATTAGTG
CTCTACTTCGCATTTCAATAACCTTTACGACCACACCAACCGGAAGTTGA
CGGCACGAAATTGAAAAGGAGCATTTGATTCCTGTTATCGTCATGTGCGA
TTCGACGACTGCCCCTTTACGAGACGAAATCGGTCTGCCATTCGCTCCGG
TGGAGAGAGCCATTGAGGCCGTGGCAGCTCAGCACAATTTTCGTGTCACA
AAACCCGCTGGAGATCTAATCAACGCCTTATTGAGCGGTAAGAGATCAGA
GAAGAATATGAATGACGCAGCAAGGCCTCCGCGTGAGAATCGTTCCCGAG
TGAAACACATGGTCATAGCCGGAGCTCGCCTCACGCAGGGGTGCATCTCG
GCTTTGCATCGGTAGATCTGGACATACCTAGAAAAATGTAGCTTCCAGAC
AGAACCTCGTTTCATTCCCATCtttccctcactccttcctgccttttctt
GGTAGAATTTATCCTGCAGCTTTGCCACCAAGGGAGTGTCTCTGCGTCCA
AAAAGCGTGTGGTAAACGAAGTGCACGTGCGTACGGCCCTGGAGACTCTG
TATGCAGGTGCGGCGCACgcgcagaaggaggaaaggagggggggacggag
gcatgtgagagggacgagagaaagggacgagggaagggaaaaggcaccgc
ggacgagggggggggggcgagaggagggagagggcagtGGGAGGAATGgt
cgggggaagagagaaggtaGCAAGGTTGTAG
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Coding sequence (CDS) from alignment at CM002469.1:32875..33655+

>rna6596 ID=rna6596|Name=rna6596|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002469.1:32875..33655+ (Nannochloropsis gaditana)
ATGTGCGATTCGACGACTGCCCCTTTACGAGACGAAATCGGTCTGCCATT
CGCTCCGGTGGAGAGAGCCATTGAGGCCGTGGCAGCTCAGCACAATTTTC
GTGTCACAAAACCCGCTGGAGATCTAATCAACGCCTTATTGAGCGAATTT
ATCCTGCAGCTTTGCCACCAAGGGAGTGTCTCTGCGTCCAAAAAGCGTGT
GGTAAACGAAGTGCACGTGCGTACGGCCCTGGAGACTCTGTATGCAGCAA
GGTTGTAGATGTGCGATTCGACGACTGCCCCTTTACGAGACGAAATCGGT
CTGCCATTCGCTCCGGTGGAGAGAGCCATTGAGGCCGTGGCAGCTCAGCA
CAATTTTCGTGTCACAAAACCCGCTGGAGATCTAATCAACGCCTTATTGA
GCGAATTTATCCTGCAGCTTTGCCACCAAGGGAGTGTCTCTGCGTCCAAA
AAGCGTGTGGTAAACGAAGTGCACGTGCGTACGGCCCTGGAGACTCTGTA
TGCAGCAAGGTTGTAGATGTGCGATTCGACGACTGCCCCTTTACGAGACG
AAATCGGTCTGCCATTCGCTCCGGTGGAGAGAGCCATTGAGGCCGTGGCA
GCTCAGCACAATTTTCGTGTCACAAAACCCGCTGGAGATCTAATCAACGC
CTTATTGAGCGAATTTATCCTGCAGCTTTGCCACCAAGGGAGTGTCTCTG
CGTCCAAAAAGCGTGTGGTAAACGAAGTGCACGTGCGTACGGCCCTGGAG
ACTCTGTATGCAGCAAGGTTGTAG
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Synonyms
Publications