EWM24094.1, cds6580 (CDS) Nannochloropsis gaditana

Overview
NameEWM24094.1
Unique Namecds6580
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:33017..33161 +
Alignment locationCM002469.1:33380..33481 +
Alignment locationCM002469.1:33645..33655 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24094.1
ProductHistone-like transcription factor
Orig transcript idgnl|cribi|Naga_101271g1.4533.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:33017..33161 +
CM002469.1supercontigCM002469.1:33380..33481 +
CM002469.1supercontigCM002469.1:33645..33655 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
Homology
[Close]
BLAST of EWM24094.1 vs. NCBI_GenBank
Match: gi|585105411|gb|EWM24094.1| (Histone-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 175.252 bits (443), Expect = 1.107e-55
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 
Query:    1 MCDSTTAPLRDEIGLPFAPVERAIEAVAAQHNFRVTKPAGDLINALLSEFILQLCHQGSVSASKKRVVNEVHVRTALETLYAARL 85
            MCDSTTAPLRDEIGLPFAPVERAIEAVAAQHNFRVTKPAGDLINALLSEFILQLCHQGSVSASKKRVVNEVHVRTALETLYAARL
Sbjct:    1 MCDSTTAPLRDEIGLPFAPVERAIEAVAAQHNFRVTKPAGDLINALLSEFILQLCHQGSVSASKKRVVNEVHVRTALETLYAARL 85
The following BLAST results are available for this feature:
BLAST of EWM24094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105411|gb|EWM24094.1|1.107e-55100.00Histone-like transcription factor [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6596rna6596Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications