rna6592, rna6592 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6592
Unique Name	rna6592
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1472
Alignment location	CM002469.1:24230..25844 +

Link to JBrowse

Properties


Property Name	Value
Product	2-oxoglutarate dehydrogenase e1 component
Orig transcript id	gnl\|cribi\|Naga_101020g1.8321.mrna
Orig protein id	gnl\|cribi\|Naga_101020g1.8321
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:24230..25844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101020g1	gene6372	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6592	rna6592-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24097.1	cds6576	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:24230..25844+
coding sequence from alignment at CM002469.1:24230..25844+

mRNA sequence

>rna6592 ID=rna6592|Name=rna6592|organism=Nannochloropsis gaditana|type=mRNA|length=1472bp
CCCTCCCTACTTCCTTCCCCAGTCCCAGGGCTTCTATCATCACCACCACG
AGCACACCCCTTCCCAAGCCGCCGGTTCCGACGCCCCCCCCACCCCGACC
ACCCTCGATGCCTCCCCCCCTGCCTCCGCCCCGCTCTCCCACCGAACAGC
GGGCGCCCTCCCTCCTTCCCTCCCCCATCCAGCGCAGGCCTCGCACCAGG
ACTACGTGACCAACACCATCACGGCCGCTACCCCGCATTGGGGAAAGCAC
AGCCACCGCCACGCGCATTTCGCGGCGTCGCCGTCGCCGTCCCATGCCAG
CAAGGGGGGAAGCAGCGGCTCGTTGATGGAGGAAGAGGAGGAAGAAGTGA
AGGAAGGAAGGGAGGGAGGGAGGGTGGGAGGGTGCGGCAGGCACCACTGA
GGATGGTAGGGCGGGGGAGGCTTTTGCAACGGTGGTCAGCTTGTTGAATT
TTAAGTATTGTATTGGAGATTCCCAGAATTTAAGTGTTGTATGCAGCCCG
CGCAGACAGGGCGAGATGTCTCATTTTAGATCTTGAAGACGAGGGGAGGG
TGCGATGGGGAGAGGGGAGATGCCGGCAGGGGTCGCCGTGAAAGCATTCC
GAAGACTCACAGCGCGACACCGTGCACGCCTGCCAAAATTGCGCGAAAAG
TGTTTCGTGGGATTCGCGAGACAGGAGCCGCGCACAGGATTTATTCTCTT
TCGGAGGGGGGCCAGGCCCGAGGGTGCTGGGTCGGCGTCTCCTCCTTCCA
GTCCTGGAAAAAGGCGCGAAAACTGAAAATATACCAGCACGAACATTGCC
AGGCTCGACGTCCCTCTAGTCAATGGGGAGAGCGGCCTCGGTGGGCATTG
GAAAGTATGGCGCGAAAGCTGGAAAGACAGGAAACGGGTCAGGTGGGGAG
GGAGCCCGCTAGGCGTCGCTGCAAGAGGAGGTAGAGGGGAAGGAAGCGAG
GAGTCGGGCGTGCGGTCCAGGCAGGGGAGGGAGACCTGAGTGGTTCGCCG
AGGTGAGAAGGAGCGTCAGGGACAGCTTGAGGTAGGAAGGAGGGAAGGAG
GGAAGGAGGGAAGGAGGGGCGAAAGGAGGAGTCACCAGCCTTGGCCAAGC
GTTTAGTCTTTGGCGGTTGTCGCGGGAAGGAAGGGAGAGATGGAAGAGGC
AACGAGGAAGGGGGAAAAAGCTGGGTTGGGTAAGAGTCCGTGAATGGGAT
GATTCTTCAAGATGGGGAGGGCGGCAAGGAACAAGGGGAGAGCGGGAACG
CCGTGGGAGGACGGCTATAGAAGACATGCCACAGGATCAAAGAAAAAAGC
AACCATTCAAGGCACTTGCGGGAGGGGGAATGGGAAAGGAAAGGGTTGAA
CATGGATTTCAAAATTTTGACTGCGACCGTTTCTCGCGCCCGTTTCAAAT
TCGTATCGCCCATCGAGCATGTTTGCCTGTGACCCTGTAAGAGCATCTCG
CACCGGATGCATTTGTGACTTT

protein sequence of rna6592

>rna6592-protein ID=rna6592-protein|Name=rna6592|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFE
RGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPR
PSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLP
PASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACL
QTIFREAARNHVRDVGIHIFLRPSL

mRNA from alignment at CM002469.1:24230..25844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6592 ID=rna6592|Name=rna6592|organism=Nannochloropsis gaditana|type=mRNA|length=1615bp|location=Sequence derived from alignment at CM002469.1:24230..25844+ (Nannochloropsis gaditana)
ACAGTTCGCTCCTGGAGAATGGCTTTTGTGCCCTCGAAATTACGAGTCTT
GCGAGGCGTCAACCTCCTGAAGAAACTTCAAGGGTAAGCAGACGTGTCAT
TTTTCTCGTGTCGCACCCAAGTCTGTGAACCCTGAGGCCAACAActcctt
ccgtccccatGCATTTGAAATGACCGTCTCATTGCTTGACAGACCTCGTG
GCATTCGACGTCGCACTTTTGCCTACACTCCGTGGGCGCTGCAACACGGC
GCCGCCCGTCTGTTGGAGGCCTTTGAACGTGGGGGCCATTTTGAAGCCGA
ACTCGATCCTTTATGCCTGAGCCCCATCCGGTATGTACGTTCAGATATCT
CTGATTCAACATTCTTTGAATCCTTGGGGTGGATGATGTGGATGTGAATT
GACAACGGGCATGGGAGCATCGACAAATAATCATCCCCACGTCACCGCtg
ctctttgtcctcccttttcacctTTGAGATGCTCTTTACATTTGTGAAGG
CTAGTCATATATGTtttcccactccctctctccattctcctcttccttct
ccctccactccctaGCGACCGCCCCGACCTCGATCCTTTACAgtattttc
ctccctcggccaCCCTCAAtaccccctttccctcctcctccccgcccacg
ctccacccccgcccctcaCTTCTCCCCACGGGCACCATCGAGACGTACGT
GAACCGCCTGCGCTCTATATATTGCGGCGGGGTCGGTTTTGAGTACGCCC
ACCTGGACGAAGGCCTCGAGAAGGACTGGTTGCGGGCCAGgtgagaagag
ggagagagtggTGGGGGATGGATTGGGAGGGTGGACGATTTAGGGAAATG
CGAGGGAATaccaggcggtggagggcgggaaagaatCTTGGGACGATGGG
AAAGGGTCTCCCCGGGCGGGGAAGCTGCGCGCGGCGCCGTAAGCCTGCCT
CTACCCCTACCCCTACCCTTAACCCTCACCAAAAAGCAGACGTCGGCGTA
TTGGCTTGGTATTACGGTCCTCCCTtcattctctttccccttttttaACA
TTTGTGGGCCTCTTGGACGTTGCGTACGTCGTTTGCTTTCTCCACTCCTA
TTTTCTtacccccttttctccctccctccctccctccctccctccctccc
tttctccctcccaccccaccttCTTCAGGGTTCCCCAACTCTTcttgcct
cctgcttcctctatCTTCTCCCCATCAGAACGCCTCAACGCCGTCACCCT
CATGATCCAGGCTCAGGTTTTCGAAGAGTACCTGGGCCTTAAatatccct
ccttcaaggtCTGCGTTGGACCTCTCTatccctcctttcgccctccctcc
tgttgCCTCGCTTCTCACCTGGCCCTCCCTTAttgtgccctcccttcctt
cgagCTGAGCCCCACCCTTTACTATTTCGAAATTCCtacttttctccctc
ctccgtccctcctcctccccctcccccccctttatCGCTTTTTCTCAGCG
ATACTCCGGAGAAGGCGCTGAAGCTATGCACGCCTGCCTCCAAACAATAT
TCCGCGAAGCCGCTCGCAACCACGTCCGTGACGTTGGTATCCacattttc
ctccgtccctccctc

Coding sequence (CDS) from alignment at CM002469.1:24230..25844+

>rna6592 ID=rna6592|Name=rna6592|organism=Nannochloropsis gaditana|type=CDS|length=3375bp|location=Sequence derived from alignment at CM002469.1:24230..25844+ (Nannochloropsis gaditana)
ATGGCTTTTGTGCCCTCGAAATTACGAGTCTTGCGAGGCGTCAACCTCCT
GAAGAAACTTCAAGGACCTCGTGGCATTCGACGTCGCACTTTTGCCTACA
CTCCGTGGGCGCTGCAACACGGCGCCGCCCGTCTGTTGGAGGCCTTTGAA
CGTGGGGGCCATTTTGAAGCCGAACTCGATCCTTTATGCCTGAGCCCCAT
CCGCGACCGCCCCGACCTCGATCCTTTACAgtattttcctccctcggcca
CCCTCAAtaccccctttccctcctcctccccgcccacgctccacccccgc
ccctcaCTTCTCCCCACGGGCACCATCGAGACGTACGTGAACCGCCTGCG
CTCTATATATTGCGGCGGGGTCGGTTTTGAGTACGCCCACCTGGACGAAG
GCCTCGAGAAGGACTGGTTGCGGGCCAGGGTTCCCCAACTCTTcttgcct
cctgcttcctctatCTTCTCCCCATCAGAACGCCTCAACGCCGTCACCCT
CATGATCCAGGCTCAGGTTTTCGAAGAGTACCTGGGCCTTAAatatccct
ccttcaagCGATACTCCGGAGAAGGCGCTGAAGCTATGCACGCCTGCCTC
CAAACAATATTCCGCGAAGCCGCTCGCAACCACGTCCGTGACGTTGGTAT
CCacattttcctccgtccctccctcATGGCTTTTGTGCCCTCGAAATTAC
GAGTCTTGCGAGGCGTCAACCTCCTGAAGAAACTTCAAGGACCTCGTGGC
ATTCGACGTCGCACTTTTGCCTACACTCCGTGGGCGCTGCAACACGGCGC
CGCCCGTCTGTTGGAGGCCTTTGAACGTGGGGGCCATTTTGAAGCCGAAC
TCGATCCTTTATGCCTGAGCCCCATCCGCGACCGCCCCGACCTCGATCCT
TTACAgtattttcctccctcggccaCCCTCAAtaccccctttccctcctc
ctccccgcccacgctccacccccgcccctcaCTTCTCCCCACGGGCACCA
TCGAGACGTACGTGAACCGCCTGCGCTCTATATATTGCGGCGGGGTCGGT
TTTGAGTACGCCCACCTGGACGAAGGCCTCGAGAAGGACTGGTTGCGGGC
CAGGGTTCCCCAACTCTTcttgcctcctgcttcctctatCTTCTCCCCAT
CAGAACGCCTCAACGCCGTCACCCTCATGATCCAGGCTCAGGTTTTCGAA
GAGTACCTGGGCCTTAAatatccctccttcaagCGATACTCCGGAGAAGG
CGCTGAAGCTATGCACGCCTGCCTCCAAACAATATTCCGCGAAGCCGCTC
GCAACCACGTCCGTGACGTTGGTATCCacattttcctccgtccctccctc
ATGGCTTTTGTGCCCTCGAAATTACGAGTCTTGCGAGGCGTCAACCTCCT
GAAGAAACTTCAAGGACCTCGTGGCATTCGACGTCGCACTTTTGCCTACA
CTCCGTGGGCGCTGCAACACGGCGCCGCCCGTCTGTTGGAGGCCTTTGAA
CGTGGGGGCCATTTTGAAGCCGAACTCGATCCTTTATGCCTGAGCCCCAT
CCGCGACCGCCCCGACCTCGATCCTTTACAgtattttcctccctcggcca
CCCTCAAtaccccctttccctcctcctccccgcccacgctccacccccgc
ccctcaCTTCTCCCCACGGGCACCATCGAGACGTACGTGAACCGCCTGCG
CTCTATATATTGCGGCGGGGTCGGTTTTGAGTACGCCCACCTGGACGAAG
GCCTCGAGAAGGACTGGTTGCGGGCCAGGGTTCCCCAACTCTTcttgcct
cctgcttcctctatCTTCTCCCCATCAGAACGCCTCAACGCCGTCACCCT
CATGATCCAGGCTCAGGTTTTCGAAGAGTACCTGGGCCTTAAatatccct
ccttcaagCGATACTCCGGAGAAGGCGCTGAAGCTATGCACGCCTGCCTC
CAAACAATATTCCGCGAAGCCGCTCGCAACCACGTCCGTGACGTTGGTAT
CCacattttcctccgtccctccctcATGGCTTTTGTGCCCTCGAAATTAC
GAGTCTTGCGAGGCGTCAACCTCCTGAAGAAACTTCAAGGACCTCGTGGC
ATTCGACGTCGCACTTTTGCCTACACTCCGTGGGCGCTGCAACACGGCGC
CGCCCGTCTGTTGGAGGCCTTTGAACGTGGGGGCCATTTTGAAGCCGAAC
TCGATCCTTTATGCCTGAGCCCCATCCGCGACCGCCCCGACCTCGATCCT
TTACAgtattttcctccctcggccaCCCTCAAtaccccctttccctcctc
ctccccgcccacgctccacccccgcccctcaCTTCTCCCCACGGGCACCA
TCGAGACGTACGTGAACCGCCTGCGCTCTATATATTGCGGCGGGGTCGGT
TTTGAGTACGCCCACCTGGACGAAGGCCTCGAGAAGGACTGGTTGCGGGC
CAGGGTTCCCCAACTCTTcttgcctcctgcttcctctatCTTCTCCCCAT
CAGAACGCCTCAACGCCGTCACCCTCATGATCCAGGCTCAGGTTTTCGAA
GAGTACCTGGGCCTTAAatatccctccttcaagCGATACTCCGGAGAAGG
CGCTGAAGCTATGCACGCCTGCCTCCAAACAATATTCCGCGAAGCCGCTC
GCAACCACGTCCGTGACGTTGGTATCCacattttcctccgtccctccctc
ATGGCTTTTGTGCCCTCGAAATTACGAGTCTTGCGAGGCGTCAACCTCCT
GAAGAAACTTCAAGGACCTCGTGGCATTCGACGTCGCACTTTTGCCTACA
CTCCGTGGGCGCTGCAACACGGCGCCGCCCGTCTGTTGGAGGCCTTTGAA
CGTGGGGGCCATTTTGAAGCCGAACTCGATCCTTTATGCCTGAGCCCCAT
CCGCGACCGCCCCGACCTCGATCCTTTACAgtattttcctccctcggcca
CCCTCAAtaccccctttccctcctcctccccgcccacgctccacccccgc
ccctcaCTTCTCCCCACGGGCACCATCGAGACGTACGTGAACCGCCTGCG
CTCTATATATTGCGGCGGGGTCGGTTTTGAGTACGCCCACCTGGACGAAG
GCCTCGAGAAGGACTGGTTGCGGGCCAGGGTTCCCCAACTCTTcttgcct
cctgcttcctctatCTTCTCCCCATCAGAACGCCTCAACGCCGTCACCCT
CATGATCCAGGCTCAGGTTTTCGAAGAGTACCTGGGCCTTAAatatccct
ccttcaagCGATACTCCGGAGAAGGCGCTGAAGCTATGCACGCCTGCCTC
CAAACAATATTCCGCGAAGCCGCTCGCAACCACGTCCGTGACGTTGGTAT
CCacattttcctccgtccctccctc

Synonyms

Publications