EWM24097.1, cds6576 (CDS) Nannochloropsis gaditana

Overview
NameEWM24097.1
Unique Namecds6576
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:24248..24312 +
Alignment locationCM002469.1:24422..24559 +
Alignment locationCM002469.1:24795..25019 +
Alignment locationCM002469.1:25408..25537 +
Alignment locationCM002469.1:25728..25844 +

Link to JBrowse

Properties
Property NameValue
End range.
End range25844
Protein idEWM24097.1
Product2-oxoglutarate dehydrogenase e1 component
Partialtrue
Orig transcript idgnl|cribi|Naga_101020g1.8321.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:24248..24312 +
CM002469.1supercontigCM002469.1:24422..24559 +
CM002469.1supercontigCM002469.1:24795..25019 +
CM002469.1supercontigCM002469.1:25408..25537 +
CM002469.1supercontigCM002469.1:25728..25844 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0030976thiamine pyrophosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: INTERPRO
TermDefinition
IPR0116032oxoglutarate_DH_E1
IPR029061THDP-binding
Homology
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|585105419|gb|EWM24097.1| (2-oxoglutarate dehydrogenase e1 component, partial [Nannochloropsis gaditana])

HSP 1 Score: 459.529 bits (1181), Expect = 1.433e-163
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225
            MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL
Sbjct:    1 MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811144|ref|XP_009838601.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 2 [Aphanomyces astaci] >gi|698811146|ref|XP_009838602.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 3 [Aphanomyces astaci] >gi|574106639|gb|ETV72156.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 2 [Aphanomyces astaci] >gi|574106640|gb|ETV72157.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 3 [Aphanomyces astaci])

HSP 1 Score: 105.531 bits (262), Expect = 1.393e-22
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            +R R +A +  +++  A R ++ +F R GH EA LDPL     R+ P  +D L     S+  +TP  SS+     P      T  ++    +LRS YCG +G E  HL    E+DWL A+V      P+ SI +PS   NA T M  A+ FE +L  K+ SFKRYSGEGAEAM   +QTI   A+++   DV I
Sbjct:   12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811136|ref|XP_009838597.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Aphanomyces astaci] >gi|574106637|gb|ETV72154.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Aphanomyces astaci])

HSP 1 Score: 105.916 bits (263), Expect = 1.403e-22
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            +R R +A +  +++  A R ++ +F R GH EA LDPL     R+ P  +D L     S+  +TP  SS+     P      T  ++    +LRS YCG +G E  HL    E+DWL A+V      P+ SI +PS   NA T M  A+ FE +L  K+ SFKRYSGEGAEAM   +QTI   A+++   DV I
Sbjct:   12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811140|ref|XP_009838599.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 4 [Aphanomyces astaci] >gi|698811142|ref|XP_009838600.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 5 [Aphanomyces astaci] >gi|574106641|gb|ETV72158.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 4 [Aphanomyces astaci] >gi|574106642|gb|ETV72159.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 5 [Aphanomyces astaci])

HSP 1 Score: 105.531 bits (262), Expect = 1.473e-22
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            +R R +A +  +++  A R ++ +F R GH EA LDPL     R+ P  +D L     S+  +TP  SS+     P      T  ++    +LRS YCG +G E  HL    E+DWL A+V      P+ SI +PS   NA T M  A+ FE +L  K+ SFKRYSGEGAEAM   +QTI   A+++   DV I
Sbjct:   12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811138|ref|XP_009838598.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 1 [Aphanomyces astaci] >gi|574106638|gb|ETV72155.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 1 [Aphanomyces astaci])

HSP 1 Score: 105.531 bits (262), Expect = 1.476e-22
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            +R R +A +  +++  A R ++ +F R GH EA LDPL     R+ P  +D L     S+  +TP  SS+     P      T  ++    +LRS YCG +G E  HL    E+DWL A+V      P+ SI +PS   NA T M  A+ FE +L  K+ SFKRYSGEGAEAM   +QTI   A+++   DV I
Sbjct:   12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|669171013|ref|XP_008620855.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Saprolegnia diclina VS20] >gi|530727480|gb|EQC25722.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Saprolegnia diclina VS20])

HSP 1 Score: 105.531 bits (262), Expect = 1.855e-22
Identity = 71/197 (36.04%), Postives = 97/197 (49.24%), Query Frame = 0
Query:   21 QGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            Q    + RR+FA            ++ AF + GH EA LDPL L   +  P+L    + P    LN     +S        S     T E    +LRS YCG +G E  HL    E++WL     +    P+  + +P+ + NA T M+ A+VFE +L  K+ SFKRYSGEGAE+M A +QTI   A+   V DV I
Sbjct:   11 QRAAAVSRRSFASATSVEGLALRSMVGAFRKHGHLEASLDPLHLEKPKPLPELASAAFAP---VLNLGAVDASSEVFF---SDAANTTPEALYAQLRSTYCGPIGIEMEHLRSTEEREWL----AKAMESPSLKV-TPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLAAIQTILSTASAEEVSDVII 196          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|1173934580|gb|OQR85877.1| (2-oxoglutarate dehydrogenase E1 component [Achlya hypogyna])

HSP 1 Score: 105.145 bits (261), Expect = 2.143e-22
Identity = 65/173 (37.57%), Postives = 90/173 (52.02%), Query Frame = 0
Query:   45 LLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            ++ AF + GH EA LDPL L   +  P+L    + P    LN     ++    +P  +     T +    +LRS YCG +G E  HL    E++WL        +   S   +P+ + NA T M+ A+VFE +L  K+ SFKRYSGEGAE+M A +QTIF  A    V DV I
Sbjct:   36 MVGAFRKHGHLEASLDPLHLEKPKPLPELTTGAFAP---VLNLGAVDATGEVFYPNAA---NTTPDALYAQLRSTYCGPIGIEMEHLRSTEEREWLAKE-----MEAPSLKVTPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLAAIQTIFSTAGAADVSDVVI 197          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|953495266|emb|CEG43173.1| (oxoglutarate dehydrogenase (succinyl-transferring) e1 component [Plasmopara halstedii])

HSP 1 Score: 102.834 bits (255), Expect = 1.454e-21
Identity = 65/170 (38.24%), Postives = 90/170 (52.94%), Query Frame = 0
Query:   48 AFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            AF + GH +A+LDPL L P R  P L    + P     N    S+    L    SL  T   + Y + L  +YCG +GFE+ +L    EK WL   +  L L   +    PS+  NA T M++A VFE ++G K+ SFKRYSGEGAE+M   ++TI +    + + DV I
Sbjct:    9 AFRQSGHLQADLDPLQLQPRRILPSLTAENFHP---LFNRTLFSTD---LTHVVSLSVTTGQQLY-DELYRVYCGKIGFEFEYLTSQDEKKWLAHAIETLSLQDVT----PSDLRNAYTSMLRADVFESFMGKKFASFKRYSGEGAESMLPAVETILQACTTSSITDVVI 167          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|813127578|ref|XP_012197390.1| (oxoglutarate dehydrogenase [Saprolegnia parasitica CBS 223.65] >gi|641538376|gb|KDO32210.1| oxoglutarate dehydrogenase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.834 bits (255), Expect = 1.498e-21
Identity = 69/197 (35.03%), Postives = 97/197 (49.24%), Query Frame = 0
Query:   21 QGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
            Q    + RR+FA            ++ AF + GH EA LDPL L   +  P+L    + P    L+     +S        S     T ++   +LRS YCG +G E  HL    E++WL     Q    P+  + +P+ + NA T M+ A+VFE +L  K+ SFKRYSGEGAE+M   +QTI   A+   V DV I
Sbjct:   11 QRAAAVSRRSFASATSVEGLAVRSMVGAFRKHGHLEASLDPLHLEKPKPLPELASAAFAP---VLSLGAVDASGEVFF---SDAANTTPDSLYAQLRSTYCGPIGIEMEHLRSTEEREWL----AQAMESPSLKV-TPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLVAIQTILSTASAEEVSDVII 196          
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|1085154960|gb|OGT45329.1| (2-oxoglutarate dehydrogenase E1 component [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20])

HSP 1 Score: 102.449 bits (254), Expect = 1.868e-21
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query:   39 QHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225
            Q     L+ AF R GH +A +DPL L      P L+   Y   +  LNT F   S   L        +GT+      LR +YCG +GFEY H++   E +W R R+ Q +   A+   +  E+L  +  +I A   E+YLG+KY   KR+S EG +++   L TI   ++ N V+++ I +  R  L
Sbjct:   89 QEKVIELVSAFRRVGHLQAHIDPLSLYKGVYNPALELAYYGFTAEDLNTVFDVGSFVGLQK-----TSGTLNEIYQLLRRVYCGSIGFEYMHINRSEELEWARTRIEQGW---ATYQLTKQEKLRTLDRLITADGLEKYLGVKYVGQKRFSLEGGDSLVPLLDTIVNRSSNNGVKEIIIGMAHRGRL 267          
The following BLAST results are available for this feature:
BLAST of EWM24097.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105419|gb|EWM24097.1|1.433e-163100.002-oxoglutarate dehydrogenase e1 component, partial... [more]
gi|698811144|ref|XP_009838601.1|1.393e-2239.18oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|698811136|ref|XP_009838597.1|1.403e-2239.18oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|698811140|ref|XP_009838599.1|1.473e-2239.18oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|698811138|ref|XP_009838598.1|1.476e-2239.18oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|669171013|ref|XP_008620855.1|1.855e-2236.04oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|1173934580|gb|OQR85877.1|2.143e-2237.572-oxoglutarate dehydrogenase E1 component [Achlya ... [more]
gi|953495266|emb|CEG43173.1|1.454e-2138.24oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|813127578|ref|XP_012197390.1|1.498e-2135.03oxoglutarate dehydrogenase [Saprolegnia parasitica... [more]
gi|1085154960|gb|OGT45329.1|1.868e-2133.162-oxoglutarate dehydrogenase E1 component [Gammapr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6592rna6592Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications