EWM24097.1, cds6576 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|585105419|gb|EWM24097.1| (2-oxoglutarate dehydrogenase e1 component, partial [Nannochloropsis gaditana]) HSP 1 Score: 459.529 bits (1181), Expect = 1.433e-163 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query: 1 MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225
MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL
Sbjct: 1 MAFVPSKLRVLRGVNLLKKLQGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811144|ref|XP_009838601.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 2 [Aphanomyces astaci] >gi|698811146|ref|XP_009838602.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 3 [Aphanomyces astaci] >gi|574106639|gb|ETV72156.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 2 [Aphanomyces astaci] >gi|574106640|gb|ETV72157.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 3 [Aphanomyces astaci]) HSP 1 Score: 105.531 bits (262), Expect = 1.393e-22 Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query: 26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
+R R +A + +++ A R ++ +F R GH EA LDPL R+ P +D L S+ +TP SS+ P T ++ +LRS YCG +G E HL E+DWL A+V P+ SI +PS NA T M A+ FE +L K+ SFKRYSGEGAEAM +QTI A+++ DV I
Sbjct: 12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811136|ref|XP_009838597.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Aphanomyces astaci] >gi|574106637|gb|ETV72154.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Aphanomyces astaci]) HSP 1 Score: 105.916 bits (263), Expect = 1.403e-22 Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query: 26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
+R R +A + +++ A R ++ +F R GH EA LDPL R+ P +D L S+ +TP SS+ P T ++ +LRS YCG +G E HL E+DWL A+V P+ SI +PS NA T M A+ FE +L K+ SFKRYSGEGAEAM +QTI A+++ DV I
Sbjct: 12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811140|ref|XP_009838599.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 4 [Aphanomyces astaci] >gi|698811142|ref|XP_009838600.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 5 [Aphanomyces astaci] >gi|574106641|gb|ETV72158.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 4 [Aphanomyces astaci] >gi|574106642|gb|ETV72159.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 5 [Aphanomyces astaci]) HSP 1 Score: 105.531 bits (262), Expect = 1.473e-22 Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query: 26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
+R R +A + +++ A R ++ +F R GH EA LDPL R+ P +D L S+ +TP SS+ P T ++ +LRS YCG +G E HL E+DWL A+V P+ SI +PS NA T M A+ FE +L K+ SFKRYSGEGAEAM +QTI A+++ DV I
Sbjct: 12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|698811138|ref|XP_009838598.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 1 [Aphanomyces astaci] >gi|574106638|gb|ETV72155.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component, variant 1 [Aphanomyces astaci]) HSP 1 Score: 105.531 bits (262), Expect = 1.476e-22 Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query: 26 IRRRTFAYTPWALQHGAAR-LLEAFERGGHFEAELDPLCLSPIRDRPD-LDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
+R R +A + +++ A R ++ +F R GH EA LDPL R+ P +D L S+ +TP SS+ P T ++ +LRS YCG +G E HL E+DWL A+V P+ SI +PS NA T M A+ FE +L K+ SFKRYSGEGAEAM +QTI A+++ DV I
Sbjct: 12 VRARMYATS--SIESLAVRSMVSSFRRLGHLEARLDPLG----RETPSAVDELAPSAFSSLFSTPL-SSTGEVYFPHA----TTDMKVLYAQLRSTYCGSLGVEIEHLKHKDERDWLAAQVEH----PSLSI-TPSMERNAWTSMQTAETFEHFLAKKFSSFKRYSGEGAEAMMPAIQTILDTASQHGTSDVVI 189
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|669171013|ref|XP_008620855.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Saprolegnia diclina VS20] >gi|530727480|gb|EQC25722.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Saprolegnia diclina VS20]) HSP 1 Score: 105.531 bits (262), Expect = 1.855e-22 Identity = 71/197 (36.04%), Postives = 97/197 (49.24%), Query Frame = 0
Query: 21 QGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
Q + RR+FA ++ AF + GH EA LDPL L + P+L + P LN +S S T E +LRS YCG +G E HL E++WL + P+ + +P+ + NA T M+ A+VFE +L K+ SFKRYSGEGAE+M A +QTI A+ V DV I
Sbjct: 11 QRAAAVSRRSFASATSVEGLALRSMVGAFRKHGHLEASLDPLHLEKPKPLPELASAAFAP---VLNLGAVDASSEVFF---SDAANTTPEALYAQLRSTYCGPIGIEMEHLRSTEEREWL----AKAMESPSLKV-TPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLAAIQTILSTASAEEVSDVII 196
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|1173934580|gb|OQR85877.1| (2-oxoglutarate dehydrogenase E1 component [Achlya hypogyna]) HSP 1 Score: 105.145 bits (261), Expect = 2.143e-22 Identity = 65/173 (37.57%), Postives = 90/173 (52.02%), Query Frame = 0
Query: 45 LLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
++ AF + GH EA LDPL L + P+L + P LN ++ +P + T + +LRS YCG +G E HL E++WL + S +P+ + NA T M+ A+VFE +L K+ SFKRYSGEGAE+M A +QTIF A V DV I
Sbjct: 36 MVGAFRKHGHLEASLDPLHLEKPKPLPELTTGAFAP---VLNLGAVDATGEVFYPNAA---NTTPDALYAQLRSTYCGPIGIEMEHLRSTEEREWLAKE-----MEAPSLKVTPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLAAIQTIFSTAGAADVSDVVI 197
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|953495266|emb|CEG43173.1| (oxoglutarate dehydrogenase (succinyl-transferring) e1 component [Plasmopara halstedii]) HSP 1 Score: 102.834 bits (255), Expect = 1.454e-21 Identity = 65/170 (38.24%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 48 AFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
AF + GH +A+LDPL L P R P L + P N S+ L SL T + Y + L +YCG +GFE+ +L EK WL + L L + PS+ NA T M++A VFE ++G K+ SFKRYSGEGAE+M ++TI + + + DV I
Sbjct: 9 AFRQSGHLQADLDPLQLQPRRILPSLTAENFHP---LFNRTLFSTD---LTHVVSLSVTTGQQLY-DELYRVYCGKIGFEFEYLTSQDEKKWLAHAIETLSLQDVT----PSDLRNAYTSMLRADVFESFMGKKFASFKRYSGEGAESMLPAVETILQACTTSSITDVVI 167
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|813127578|ref|XP_012197390.1| (oxoglutarate dehydrogenase [Saprolegnia parasitica CBS 223.65] >gi|641538376|gb|KDO32210.1| oxoglutarate dehydrogenase [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 102.834 bits (255), Expect = 1.498e-21 Identity = 69/197 (35.03%), Postives = 97/197 (49.24%), Query Frame = 0
Query: 21 QGPRGIRRRTFAYTPWALQHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGI 217
Q + RR+FA ++ AF + GH EA LDPL L + P+L + P L+ +S S T ++ +LRS YCG +G E HL E++WL Q P+ + +P+ + NA T M+ A+VFE +L K+ SFKRYSGEGAE+M +QTI A+ V DV I
Sbjct: 11 QRAAAVSRRSFASATSVEGLAVRSMVGAFRKHGHLEASLDPLHLEKPKPLPELASAAFAP---VLSLGAVDASGEVFF---SDAANTTPDSLYAQLRSTYCGPIGIEMEHLRSTEEREWL----AQAMESPSLKV-TPAMQRNAFTAMMTAEVFENFLAKKFSSFKRYSGEGAESMLVAIQTILSTASAEEVSDVII 196
BLAST of EWM24097.1 vs. NCBI_GenBank
Match: gi|1085154960|gb|OGT45329.1| (2-oxoglutarate dehydrogenase E1 component [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20]) HSP 1 Score: 102.449 bits (254), Expect = 1.868e-21 Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query: 39 QHGAARLLEAFERGGHFEAELDPLCLSPIRDRPDLDPLQYFPPSATLNTPFPSSSPPTLHPRPSLLPTGTIETYVNRLRSIYCGGVGFEYAHLDEGLEKDWLRARVPQLFLPPASSIFSPSERLNAVTLMIQAQVFEEYLGLKYPSFKRYSGEGAEAMHACLQTIFREAARNHVRDVGIHIFLRPSL 225
Q L+ AF R GH +A +DPL L P L+ Y + LNT F S L +GT+ LR +YCG +GFEY H++ E +W R R+ Q + A+ + E+L + +I A E+YLG+KY KR+S EG +++ L TI ++ N V+++ I + R L
Sbjct: 89 QEKVIELVSAFRRVGHLQAHIDPLSLYKGVYNPALELAYYGFTAEDLNTVFDVGSFVGLQK-----TSGTLNEIYQLLRRVYCGSIGFEYMHINRSEELEWARTRIEQGW---ATYQLTKQEKLRTLDRLITADGLEKYLGVKYVGQKRFSLEGGDSLVPLLDTIVNRSSNNGVKEIIIGMAHRGRL 267 The following BLAST results are available for this feature:
BLAST of EWM24097.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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