rna659, rna659 (mRNA) Nannochloropsis gaditana

Overview
Namerna659
Unique Namerna659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length363
Alignment locationCM002456.1:99596..101239 +

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Properties
Property NameValue
Productdnaj heat shock n-terminal domain-containing
Orig transcript idgnl|cribi|Naga_100802g2.3724.mrna
Orig protein idgnl|cribi|Naga_100802g2.3724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:99596..101239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100802g2gene632Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna659rna659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30015.1cds659Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna659 ID=rna659|Name=rna659|organism=Nannochloropsis gaditana|type=mRNA|length=363bp
ATGAGCGCAAGCTTTCGTCCCACTCAGGCCTTCTGTCGCCTTTTTCTCGG
CTCCCTTGCCCTCATGATGCTACTTCGATCCTCAGCTTCGTTTCTAGTGC
GCAGCACCCGCAATGGCACCCCCATGTCCATCCTGAACGCCCAGCGTCGT
GGTGGTGCGGTCTCAGCGCGTGCCGTGTCTTCCTCTTTCCACCGGGGCCG
GTCTGTCTTCGCCTCCGTGGATCTGGGCGGAGGTGTGGTCACGCGCTTGG
ACAAGGCACGTGACGTATTTGGGGACAAGCAAACAAAAAAATCCTGGGAC
TACGTGGCGCATCATCCTTGCTATGAAATGGTGAAGTCTGAAGTTGTGCA
GGAACGGAGGTGA
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protein sequence of rna659

>rna659-protein ID=rna659-protein|Name=rna659|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MNSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRA
RPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEE
VRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETE
EGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRVRG
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mRNA from alignment at CM002456.1:99596..101239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna659 ID=rna659|Name=rna659|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at CM002456.1:99596..101239+ (Nannochloropsis gaditana)
CGAAGCTTCCCTTTTGATGCTTTTTACCCCGAGAAAGAGGTGTTGATGCC
TTCGCAGTCCAGCGAAGCATCGGATACGCACATTTAGAGTTGCGAGGGAT
TTATGGTTTCGGTATGCGTGCTTTATATGGGGTACACTTATCGTTTGTGT
GGAAGGCAGGTTTATCGCAGCTCGAACGCAACTACAGGAGCAGgaccctt
cctttccaaacTTTTGTAAGGGTAGCACGCACCAATTTTGGTTCACAACA
GTAGTCCACCGATATACACGAAGAAAGTGTCGGCGTTTGATTCACCGTCC
CTCTCAGCAATATCTTGTTTTTTGTGATGGACTGTGTAAGGGGTGCTCTT
TCctcttaacctcccccccccgtccggAGTGGAAAATAGGAGTGCTTAGG
TATCAAAGACAATATGAGTGATTAGTATTACGGGTTGAGAATAAGCACAA
CACGCCTCCGttatttcttcttccttacaAACCAGCCGGACAAGCCCCTG
CATCCATGAGGCAACCTGGGGAATCCAGCAAGCAATGGTAGCATGAACAG
TACACCTACCCTGTCTTTATATGATATCTTGGGTGTTTCTCCCGCTGCGT
CGCCCTCTACCATCAAACGCGCCTATCAATCAGCTGCTAGAGCCACGCAT
CCTGATAAGGCTGCGGCTCATTCGAAAGGTGGTTGTCGGGCCAGACCGGG
TCAtgtctcctctcccaggtAAGGAATGCAGAAGAACCCTTTATCCTTGA
GGTTTGGGAGCGAAGTACTTTGAATGCCTAGCTGCGTGTGTGGGCTTCAA
GCCGGTGCCGACGTATTTCCTCACAatccctttcttggcctgTCCTGGCT
CTCGAAAAGTACCGCATGGGACCTTACCACGGAGAACGAAGAAGTcggca
tggaggaagtgaagcGGGGAGGATGCACGCTGCCGCCACGAATGTTGATA
CAGAGCCGACGCTGACCTCAATATACCTGCTTTTCTTCTGGTTTTCAGGT
TCACTTTCTTGGAGATACAGGCGGCATGGGATGTATTGAGGGCCCGGGAA
AGCCGCGCCGCGTACGATGCAGCCTGGGGGCGAaagagggatgaggaggt
tgagggcttcatcgcggaggaggtgagggttgcggagatggaggaggagg
gcggggaggaggacgggaaggaaaggtggCTGCTGTACCCTTGCCGGTGC
GGCGATGCCTTTCGTGTcccgaaagaggagggacgctTTCTCGtgggggg
gacagggagccgagagacagaggagggtgggacggagaaGGTTAAAATGG
AtagaagtggaggagggggcggcggccaagatggaggagctgctgtGGTG
GTGACTTGCGATGGGTGTTCGTTGCGCATCCGTGTTAGGGGatgatgatg
gaaaaggacgcgaaggaCGCTGTTGTTAGGGGatgatgatggaaaaggac
gcgaaggaggctGTTGTCCGGGGATgatgagggaaaagagcCCGGGGCCA
CGCCGATGGAGTGGCGAAATCGCCGCCCACTGCGACAATCGCCAAGCTCG
TATTGCACACAGATACTCATCAAGTAAAGTAAAATCTCACGACTCTTCTA
CCCGATGTGAAAGCGGCGTTGTCGTCAAGATTCGAACACACGAG
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Coding sequence (CDS) from alignment at CM002456.1:99596..101239+

>rna659 ID=rna659|Name=rna659|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002456.1:99596..101239+ (Nannochloropsis gaditana)
ATGAACAGTACACCTACCCTGTCTTTATATGATATCTTGGGTGTTTCTCC
CGCTGCGTCGCCCTCTACCATCAAACGCGCCTATCAATCAGCTGCTAGAG
CCACGCATCCTGATAAGGCTGCGGCTCATTCGAAAGGTGGTTGTCGGGCC
AGACCGGGTCAtgtctcctctcccagGTTCACTTTCTTGGAGATACAGGC
GGCATGGGATGTATTGAGGGCCCGGGAAAGCCGCGCCGCGTACGATGCAG
CCTGGGGGCGAaagagggatgaggaggttgagggcttcatcgcggaggag
gtgagggttgcggagatggaggaggagggcggggaggaggacgggaagga
aaggtggCTGCTGTACCCTTGCCGGTGCGGCGATGCCTTTCGTGTcccga
aagaggagggacgctTTCTCGtgggggggacagggagccgagagacagag
gagggtgggacggagaaGGTTAAAATGGAtagaagtggaggagggggcgg
cggccaagatggaggagctgctgtGGTGGTGACTTGCGATGGGTGTTCGT
TGCGCATCCGTGTTAGGGGatgaATGAACAGTACACCTACCCTGTCTTTA
TATGATATCTTGGGTGTTTCTCCCGCTGCGTCGCCCTCTACCATCAAACG
CGCCTATCAATCAGCTGCTAGAGCCACGCATCCTGATAAGGCTGCGGCTC
ATTCGAAAGGTGGTTGTCGGGCCAGACCGGGTCAtgtctcctctcccagG
TTCACTTTCTTGGAGATACAGGCGGCATGGGATGTATTGAGGGCCCGGGA
AAGCCGCGCCGCGTACGATGCAGCCTGGGGGCGAaagagggatgaggagg
ttgagggcttcatcgcggaggaggtgagggttgcggagatggaggaggag
ggcggggaggaggacgggaaggaaaggtggCTGCTGTACCCTTGCCGGTG
CGGCGATGCCTTTCGTGTcccgaaagaggagggacgctTTCTCGtggggg
ggacagggagccgagagacagaggagggtgggacggagaaGGTTAAAATG
GAtagaagtggaggagggggcggcggccaagatggaggagctgctgtGGT
GGTGACTTGCGATGGGTGTTCGTTGCGCATCCGTGTTAGGGGatga
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Synonyms
Publications