EWM30015.1, cds659 (CDS) Nannochloropsis gaditana

Overview
NameEWM30015.1
Unique Namecds659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:100138..100313 +
Alignment locationCM002456.1:100594..100990 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30015.1
Productdnaj heat shock n-terminal domain-containing
Orig transcript idgnl|cribi|Naga_100802g2.3724.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:100138..100313 +
CM002456.1supercontigCM002456.1:100594..100990 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR007872Znf_DHP
IPR001623DnaJ_domain
Homology
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|585112637|gb|EWM30015.1| (dnaj heat shock n-terminal domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 382.874 bits (982), Expect = 2.068e-134
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MNSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRVRG 190
            MNSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRVRG
Sbjct:    1 MNSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRVRG 190          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|553181103|ref|XP_005853514.1| (hypothetical protein NGA_0483300, partial [Nannochloropsis gaditana CCMP526] >gi|422295547|gb|EKU22846.1| hypothetical protein NGA_0483300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 240.35 bits (612), Expect = 3.780e-79
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MNSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERW 119
            MNSTPTLSLYDILGVSPAASPSTIKRAYQ+AARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGR+RDEEVEGFIAEEVRVAEMEEEGGEEDGKERW
Sbjct:    1 MNSTPTLSLYDILGVSPAASPSTIKRAYQAAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRQRDEEVEGFIAEEVRVAEMEEEGGEEDGKERW 119          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|226504220|ref|NP_001142310.1| (uncharacterized LOC100274479 [Zea mays] >gi|194708154|gb|ACF88161.1| unknown [Zea mays])

HSP 1 Score: 92.0485 bits (227), Expect = 4.409e-20
Identity = 69/187 (36.90%), Postives = 96/187 (51.34%), Query Frame = 0
Query:    2 NSTPTLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            N +   +LY++L VS  A+   I+ AY+SAA  THPDKA    +    + P   S+ +  F  +Q AW+VLR   SRA YD      R + +E  IA E++V +M  E          LLYPCRCGD F +   E    + G G   T +G  E+V+     G      G A+VV+ C  CSL+IR+
Sbjct:    6 NISVQKTLYEVLSVSEDATYDEIRAAYRSAALNTHPDKAQTTLESS--SVP---STEQQEFSSVQKAWEVLRHPTSRAYYDKQLQSSR-QSIE-IIASEIQVGDMIVESA---AGALELLYPCRCGDYFSITSGE----LSGMGIVVTGDG--EEVE-----GLQASDSGSASVVLGCGSCSLKIRL 171          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|242044946|ref|XP_002460344.1| (DPH4 homolog [Sorghum bicolor] >gi|1205935224|ref|XP_021309514.1| DPH4 homolog [Sorghum bicolor] >gi|1174563791|gb|OQU89620.1| hypothetical protein SORBI_3002G227200 [Sorghum bicolor] >gi|1174563792|gb|OQU89621.1| hypothetical protein SORBI_3002G227200 [Sorghum bicolor])

HSP 1 Score: 91.6633 bits (226), Expect = 5.022e-20
Identity = 63/184 (34.24%), Postives = 86/184 (46.74%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGR---FLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++L VS  A+   I+ AY+SAA  THPDKA    +          SS +  F  +Q AW++LR   SRA YD      R + +E  IA E+ V +M  E          LLYPCRCGD F + K E      LV G G  E +                      A++V+ C  CSL+I++
Sbjct:   12 TLYEVLSVSEDATYDEIRAAYRSAALTTHPDKAHTTLESSVP------SSEQQEFFSVQKAWEILRHPTSRADYDKQLQSSR-QNIE-IIASEIEVGDMIIEST---ADTLVLLYPCRCGDYFSITKCELSGMGHLVSGDGEVELQ----------------ASDSASASIVLGCGSCSLKIKL 168          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|944238284|gb|KQL02622.1| (hypothetical protein SETIT_015799mg, partial [Setaria italica])

HSP 1 Score: 91.2781 bits (225), Expect = 1.172e-19
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++L VS  A+   I+ AY+SAA  THPD      KG         SS +  FL +Q AW++LR   SRA YD      R + +E  IA E+++ +M  E   +  +   LLYPCRCGD F +   E    +G  G   + +G  E+   D S          A VV+ C  CSL++R+
Sbjct:   28 TLYEVLSVSEDATYGEIRAAYKSAALNTHPD------KGHMTLESSVPSSEQQEFLSVQRAWEILRHPASRADYDKQLQSSR-QNIE-IIASEIKIGDMIVESTADTVE---LLYPCRCGDYFSITSCE----LGDMGILVSGDGEVEQQASDSS---------SAFVVLGCGSCSLKVRL 184          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|514798085|ref|XP_004973988.1| (PREDICTED: DPH4 homolog isoform X1 [Setaria italica])

HSP 1 Score: 90.8929 bits (224), Expect = 3.991e-19
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++L VS  A+   I+ AY+SAA  THPD      KG         SS +  FL +Q AW++LR   SRA YD      R + +E  IA E+++ +M  E   +  +   LLYPCRCGD F +   E    +G  G   + +G  E+   D S          A VV+ C  CSL++R+
Sbjct:   71 TLYEVLSVSEDATYGEIRAAYKSAALNTHPD------KGHMTLESSVPSSEQQEFLSVQRAWEILRHPASRADYDKQLQSSR-QNIE-IIASEIKIGDMIVESTADTVE---LLYPCRCGDYFSITSCE----LGDMGILVSGDGEVEQQASDSS---------SAFVVLGCGSCSLKVRL 227          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|573956967|ref|XP_006660706.1| (PREDICTED: DPH4 homolog [Oryza brachyantha])

HSP 1 Score: 88.9669 bits (219), Expect = 7.016e-19
Identity = 64/181 (35.36%), Postives = 87/181 (48.07%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY+IL V   ++   I+ AY+SAA  THPDKA           P   SS +  FL +Q AW++LR  +SRA YD      R   +   +A E+ + +M  E    D  E  LLYPCRCGD F +   E    +G  G    E+G  E    D            A+VV+ C  CSL+ R+
Sbjct:   18 TLYEILSVGEHSTFDEIRAAYKSAALNTHPDKAQM------APNPLVSSSEQNEFLSVQKAWEILRYPKSRAEYDRQLQSSRQNLL--VVASEIEIDDMTVETT-ADAVE--LLYPCRCGDYFSITSHE----LGKIGISVREDGEMELQTSDSV---------PASVVLGCGSCSLKARL 174          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|1002298170|ref|XP_015612505.1| (PREDICTED: DPH4 homolog isoform X2 [Oryza sativa Japonica Group] >gi|1002298172|ref|XP_015612506.1| PREDICTED: DPH4 homolog isoform X2 [Oryza sativa Japonica Group] >gi|1002298174|ref|XP_015612507.1| PREDICTED: DPH4 homolog isoform X2 [Oryza sativa Japonica Group] >gi|51535265|dbj|BAD38528.1| DNAJ heat shock N-terminal domain-containing protein-like [Oryza sativa Japonica Group] >gi|51536221|dbj|BAD38392.1| DNAJ heat shock N-terminal domain-containing protein-like [Oryza sativa Japonica Group] >gi|113631618|dbj|BAF25299.1| Os09g0460000 [Oryza sativa Japonica Group] >gi|125605969|gb|EAZ45005.1| hypothetical protein OsJ_29646 [Oryza sativa Japonica Group] >gi|215678830|dbj|BAG95267.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937933556|dbj|BAT08471.1| Os09g0460000 [Oryza sativa Japonica Group])

HSP 1 Score: 88.1965 bits (217), Expect = 1.139e-18
Identity = 62/181 (34.25%), Postives = 88/181 (48.62%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++L V   A+   I+ AY+SA   THPDKA           P   SS R  FL +Q AW++LR  +SRA YD      R + +E  +A E+ + +M  E   +  +   LLYPCRCGD F +   E    +G  G    E+G  E    D            ++VV+ C  CSL+ R+
Sbjct:   12 TLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMA------LNPLVSSSERNEFLSVQKAWEILRYPKSRAEYDKQLQSSR-QNLE-IVATEIEIDDMIVESTADSVE---LLYPCRCGDYFSITSRE----LGQIGISVREDGEMELHTSD---------SVPSSVVLGCGSCSLKARL 168          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|1205923287|ref|XP_002466012.2| (DPH4 homolog [Sorghum bicolor] >gi|992282425|gb|KXG40388.1| hypothetical protein SORBI_3001G537900 [Sorghum bicolor])

HSP 1 Score: 87.8113 bits (216), Expect = 1.538e-18
Identity = 64/185 (34.59%), Postives = 88/185 (47.57%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVP----KEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++  VS  A+   I+ AY+SAA  THPDKA    +          SS +  F  +Q AW++LR   SRA YD      R + +E  IA E++V +M  E   +  +   LLYPCRCGD F +      E G F V G G  E +                      A+VV+ C  CSL+IR+
Sbjct:   12 TLYEVFSVSEDATYDEIRAAYRSAALNTHPDKAQTTLESSVP------SSEQQEFCSVQKAWEILRHPASRADYDKQLQSSR-QNIE-IIASEIKVGDMIIESTADTVE---LLYPCRCGDYFFITSCQLSEMGIF-VSGDGEVELQ----------------ASDSASASVVLGCGSCSLKIRL 168          
BLAST of EWM30015.1 vs. NCBI_GenBank
Match: gi|1002298168|ref|XP_015612504.1| (PREDICTED: DPH4 homolog isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 88.1965 bits (217), Expect = 2.367e-18
Identity = 62/181 (34.25%), Postives = 88/181 (48.62%), Query Frame = 0
Query:    8 SLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRFTFLEIQAAWDVLRARESRAAYDAAWGRKRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
            +LY++L V   A+   I+ AY+SA   THPDKA           P   SS R  FL +Q AW++LR  +SRA YD      R + +E  +A E+ + +M  E   +  +   LLYPCRCGD F +   E    +G  G    E+G  E    D            ++VV+ C  CSL+ R+
Sbjct:   42 TLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQM------ALNPLVSSSERNEFLSVQKAWEILRYPKSRAEYDKQLQSSR-QNLE-IVATEIEIDDMIVESTADSVE---LLYPCRCGDYFSITSRE----LGQIGISVREDGEMELHTSD---------SVPSSVVLGCGSCSLKARL 198          
The following BLAST results are available for this feature:
BLAST of EWM30015.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112637|gb|EWM30015.1|2.068e-134100.00dnaj heat shock n-terminal domain-containing [Nann... [more]
gi|553181103|ref|XP_005853514.1|3.780e-7998.32hypothetical protein NGA_0483300, partial [Nannoch... [more]
gi|226504220|ref|NP_001142310.1|4.409e-2036.90uncharacterized LOC100274479 [Zea mays] >gi|194708... [more]
gi|242044946|ref|XP_002460344.1|5.022e-2034.24DPH4 homolog [Sorghum bicolor] >gi|1205935224|ref|... [more]
gi|944238284|gb|KQL02622.1|1.172e-1935.36hypothetical protein SETIT_015799mg, partial [Seta... [more]
gi|514798085|ref|XP_004973988.1|3.991e-1935.36PREDICTED: DPH4 homolog isoform X1 [Setaria italic... [more]
gi|573956967|ref|XP_006660706.1|7.016e-1935.36PREDICTED: DPH4 homolog [Oryza brachyantha][more]
gi|1002298170|ref|XP_015612505.1|1.139e-1834.25PREDICTED: DPH4 homolog isoform X2 [Oryza sativa J... [more]
gi|1205923287|ref|XP_002466012.2|1.538e-1834.59DPH4 homolog [Sorghum bicolor] >gi|992282425|gb|KX... [more]
gi|1002298168|ref|XP_015612504.1|2.367e-1834.25PREDICTED: DPH4 homolog isoform X1 [Oryza sativa J... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna659rna659Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications