rna6585, rna6585 (mRNA) Nannochloropsis gaditana

Overview
Namerna6585
Unique Namerna6585
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1597
Alignment locationCM002468.1:858947..859555 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100445g2.3235.mrna
Orig protein idgnl|cribi|Naga_100445g2.3235
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:858947..859555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100445g2gene6364Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6585rna6585-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24103.1cds6569Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6585 ID=rna6585|Name=rna6585|organism=Nannochloropsis gaditana|type=mRNA|length=1597bp
ACATGCCAGCTGTCAAGGAGGACTACGATGTCCTAGAAGTCATCGGACAA
GGATCCTTCGGAAAAGTATGTCGGGTCCGCCGCGTGGAGGACGGCAAGGT
CTTGGTGTGGAAAGAGATCAACTACGCGCACATGCGTCCCCTAGAGAAGC
AACGCATTGCCGACGAGGTGAACATCCTCAAGGACCTTCGTAACCCCTTC
ATCGTCCGCTTCTACGACCACGTGATCGAGCGCGCGAGCAAAAAGTGCTA
CATCATCATGGAGCATTGCCCGGGTGGTGATCTTCGCCGCCTGATCAAAA
CCTGTCGACGCGAGGGCCGTTGGATCGATGAGGGCTTTATCTGGCGTGTA
CTCGCCCAGCTCATTGTGGCGCTCAAGGACTGCCATCGACGCGCCCGGCC
CATTCTCCATCGAGACATCAAACCTGCCAACGTCCTCCTCGATCAGGATC
GCAACATCAAACTCGCCGATTTCGGCCTGGCGAAGGAGCTCGACAACGAA
CGCGCATTCGCAGCCACCAACGTAGGCACGCCCTACTACATGTCTCCCGA
GCTGGTGAACCATCAATCCTACGATGATGGGGCTGACTTATGGAGCGTGG
GCTGTCTCCTGTACGAGGCTGCCGCCCTCCGGCCCCCCTTCGATGCCTCC
TCCCACGCCTCGCTCGCCCACAAAATTAATGCCGGGAAGATCTCTCGCAT
CCCTGACAGATATTCGGACGAGCTCCAGCAAGTCATTCGCGCCATGCTGC
ACAAAAATCCTGCAAAACGCCCTCAGCTTGAGACCTTGGAAAAAGCCGTG
CCCTCCCTGGCTCCCCACCTCCGTGAGTCCCGAGCCCTCCTTCTCGAGTA
CGAGCTTCAAGCTCGCTACCACGCGCGTATGAAGCAAGTCCGTGCCCGGG
AAGAAGAAGTCAAGCAGCGAGAGACCTCGCTCCGGTGCAGGGAAGACGCA
CTTGAACGCAGGCAACGTCGCCTTATCGAGCGGGAACGACAGTTGCAGCG
CTCCCTACAGACCCATGCTTCCCCCTCGCCCTCCATCCCTACCTCGCGCC
CGCCCTCCGACTCCACGCTGCTTCTCGCTTCCGTCTCAGCCTCTGTGCAG
GCGCGTGAGAAAATGCGAAGACCGGGGCTACTGACAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAAAGAGGAAGACGAGGAGAACCTCTCCCTTG
GCAGCCAGGCCTCTGCCCTTTGCGACGCAGCCACTGCCGCCCACCGGAAT
GAAGATGCTCACACCACTCTCGAGGAGGAAGGAAGCGAGGACGAGGACGA
GGACGAGGACGAGGACGAGGAAGGGCTCGTCTACCGTCACCAAACCGCTT
CTCTCTCAACCCGACGTCAAGATTCACCCCTGGGACCCCCCCTCCCCCTC
CCCCTCGCCCTCGTCCCTCACCCCGTCGACCCGAGGCAGAGACCGGGCAA
CCAGACGTTTCCCTTTCTACTCCTCCGACTCCTCCTCACCACGCTATCCC
TGCCTCGGCAGCAGCATCCGGCAGCAACAGCGGAGCGGGACGGGGAGGAG
GGAGGGGTGGACGCAGGAGCTGTCCCTTGTCCACGCCCCCTCCCACC
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protein sequence of rna6585

>rna6585-protein ID=rna6585-protein|Name=rna6585|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MLTRPSSGRNSIPCPPSSRLTIDPVAPLTRTAAAVSLTLPVEQVRWKGEG
WGTARRQGRNVEEPEYIFDVDGHDGVSSFHLPSLHLQIQPTNITNNGLMS
AVGDRHEAASGVRGSQYPRAFM
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mRNA from alignment at CM002468.1:858947..859555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6585 ID=rna6585|Name=rna6585|organism=Nannochloropsis gaditana|type=mRNA|length=609bp|location=Sequence derived from alignment at CM002468.1:858947..859555+ (Nannochloropsis gaditana)
ATGCTTACAAGGCCCAGCAGCGGCAGAAACAGCATCCCCTGCCCACCTTC
CAGCCGCCTTACCATCGACCCTGTCGCGCCTCTCACgagaacagcagcag
cggtaTCGTTGACGTTACCAGTGGAACAGGTAAGATGGAAGTACTTAATG
AAGACAAATTGAGGTACtgagggatgaagaagaatAGACATCGAGCAACA
ACGGGGTTGAAGATTTCTAAAGGCGAAGTGAGGCCTTGGTCAGGACGGGA
CGTTCTATGTCCGCAGCAGGAAATTGAtcgttcctccttttttcttcatc
tcTTCCAGGGTATTTCTGCCCTTCCAATGATCGCATCAacctgctttccc
ctccatcatcctACCGACCCGTCGtcaaaggggggaaggatgggggactg
caaggaggcaggggaggaatgtTGAAGAGCCCGAATACATCTTTGATGTC
GATGGACACGACGGTGTCAGCAGCTTCCACCTCCCATCACTCCATCTCCA
GATTCAACCGACTAACATAACAAATAACGGACTTATGTCGGCGGTAGGGG
ATAGACATGAAGCAGCTTCAGGAGTACGAGGCAGTCAATATCCACGCGCG
TTCATGTGA
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Coding sequence (CDS) from alignment at CM002468.1:858947..859555+

>rna6585 ID=rna6585|Name=rna6585|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002468.1:858947..859555+ (Nannochloropsis gaditana)
ATGCTTACAAGGCCCAGCAGCGGCAGAAACAGCATCCCCTGCCCACCTTC
CAGCCGCCTTACCATCGACCCTGTCGCGCCTCTCACgagaacagcagcag
cggtaTCGTTGACGTTACCAGTGGAACAGGTAAGATGGAAgggggaagga
tgggggactgcaaggaggcaggggaggaatgtTGAAGAGCCCGAATACAT
CTTTGATGTCGATGGACACGACGGTGTCAGCAGCTTCCACCTCCCATCAC
TCCATCTCCAGATTCAACCGACTAACATAACAAATAACGGACTTATGTCG
GCGGTAGGGGATAGACATGAAGCAGCTTCAGGAGTACGAGGCAGTCAATA
TCCACGCGCGTTCATGTGAATGCTTACAAGGCCCAGCAGCGGCAGAAACA
GCATCCCCTGCCCACCTTCCAGCCGCCTTACCATCGACCCTGTCGCGCCT
CTCACgagaacagcagcagcggtaTCGTTGACGTTACCAGTGGAACAGGT
AAGATGGAAgggggaaggatgggggactgcaaggaggcaggggaggaatg
tTGAAGAGCCCGAATACATCTTTGATGTCGATGGACACGACGGTGTCAGC
AGCTTCCACCTCCCATCACTCCATCTCCAGATTCAACCGACTAACATAAC
AAATAACGGACTTATGTCGGCGGTAGGGGATAGACATGAAGCAGCTTCAG
GAGTACGAGGCAGTCAATATCCACGCGCGTTCATGTGA
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Synonyms
Publications